Literature DB >> 21578485

(5Z)-5-(2-Hydroxy-benzyl-idene)-3-phenyl-2-thioxo-1,3-thia-zolidin-4-one.

Durre Shahwar, M Nawaz Tahir, Muhammad Asam Raza, Bushra Iqbal.   

Abstract

In the title compound, C(16)H(11)NO(2)S(2), the dihedral angles between the heterocyclic ring and the phenyl and anilinic benzene rings are 9.68 (13) and 79.26 (6)°, respectively, and an intra-molecular C-H⋯S inter-action occurs. In the crystal, inversion dimers linked by pairs of O-H⋯O hydrogen bonds occur, leading to R(2) (2)(10) loops, and C-H⋯O and weak C-H⋯π inter-actions further consolidate the packing.

Entities:  

Year:  2009        PMID: 21578485      PMCID: PMC2971093          DOI: 10.1107/S1600536809044286

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Linden et al. (1999 ▶); Shahwar et al. (2009a ▶, 2009b ▶). For graph-set theory, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H11NO2S2 M = 313.40 Monoclinic, a = 11.6553 (7) Å b = 7.3424 (4) Å c = 16.8256 (10) Å β = 95.131 (2)° V = 1434.13 (14) Å3 Z = 4 Mo Kα radiation μ = 0.37 mm−1 T = 296 K 0.26 × 0.18 × 0.17 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.924, T max = 0.937 15580 measured reflections 3481 independent reflections 2194 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.102 S = 1.01 3481 reflections 191 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809044286/hb5180sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809044286/hb5180Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H11NO2S2F(000) = 648
Mr = 313.40Dx = 1.452 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3481 reflections
a = 11.6553 (7) Åθ = 2.0–28.0°
b = 7.3424 (4) ŵ = 0.37 mm1
c = 16.8256 (10) ÅT = 296 K
β = 95.131 (2)°Prisms, orange yellow
V = 1434.13 (14) Å30.26 × 0.18 × 0.17 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer3481 independent reflections
Radiation source: fine-focus sealed tube2194 reflections with I > 2σ(I)
graphiteRint = 0.048
Detector resolution: 7.40 pixels mm-1θmax = 28.0°, θmin = 2.0°
ω scansh = −15→14
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −9→9
Tmin = 0.924, Tmax = 0.937l = −22→22
15580 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0375P)2 + 0.326P] where P = (Fo2 + 2Fc2)/3
3481 reflections(Δ/σ)max < 0.001
191 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.16936 (5)0.50419 (7)0.48587 (3)0.0463 (2)
S20.12725 (6)0.16709 (8)0.57270 (4)0.0591 (2)
O10.45774 (15)0.5967 (2)0.60654 (9)0.0572 (6)
O20.40155 (14)1.1358 (2)0.44795 (9)0.0515 (6)
N10.30920 (15)0.3922 (2)0.60195 (9)0.0376 (6)
C10.35642 (18)0.2866 (3)0.66982 (12)0.0370 (7)
C20.3410 (2)0.3461 (3)0.74551 (12)0.0432 (7)
C30.3835 (2)0.2416 (3)0.81002 (12)0.0477 (8)
C40.4398 (2)0.0815 (3)0.79786 (14)0.0497 (8)
C50.4550 (2)0.0235 (3)0.72188 (14)0.0524 (9)
C60.4139 (2)0.1273 (3)0.65678 (13)0.0466 (8)
C70.20684 (19)0.3439 (3)0.55947 (12)0.0399 (7)
C80.29274 (19)0.6347 (3)0.51013 (11)0.0385 (7)
C90.3643 (2)0.5470 (3)0.57636 (12)0.0401 (7)
C100.32304 (19)0.7938 (3)0.47846 (12)0.0418 (7)
C110.26629 (19)0.9014 (3)0.41462 (11)0.0379 (7)
C120.31041 (19)1.0743 (3)0.39934 (12)0.0389 (7)
C130.2611 (2)1.1796 (3)0.33719 (13)0.0494 (8)
C140.1673 (2)1.1153 (3)0.28976 (13)0.0540 (9)
C150.1207 (2)0.9486 (3)0.30463 (13)0.0533 (9)
C160.1702 (2)0.8438 (3)0.36550 (13)0.0478 (8)
H20.302680.454830.753310.0518*
H2A0.430581.223360.427100.0772*
H30.373820.280030.861660.0572*
H40.468070.011660.841390.0596*
H50.49284−0.085720.714180.0629*
H60.425010.089950.605200.0559*
H100.391810.842630.501410.0502*
H130.291211.293900.327430.0593*
H140.135381.185440.247370.0648*
H150.055920.907150.273560.0640*
H160.138810.729990.374520.0574*
U11U22U33U12U13U23
S10.0458 (4)0.0443 (3)0.0466 (3)−0.0085 (3)−0.0083 (2)0.0067 (2)
S20.0556 (4)0.0454 (3)0.0756 (4)−0.0154 (3)0.0014 (3)0.0099 (3)
O10.0538 (11)0.0551 (10)0.0582 (10)−0.0197 (8)−0.0194 (8)0.0209 (8)
O20.0534 (11)0.0476 (9)0.0518 (9)−0.0149 (8)−0.0042 (8)0.0148 (7)
N10.0414 (11)0.0340 (9)0.0369 (9)−0.0023 (8)0.0001 (8)0.0047 (7)
C10.0387 (13)0.0322 (10)0.0397 (11)−0.0023 (9)0.0020 (9)0.0042 (8)
C20.0475 (14)0.0371 (11)0.0449 (12)0.0020 (10)0.0036 (10)0.0007 (9)
C30.0533 (16)0.0514 (13)0.0380 (12)−0.0027 (12)0.0027 (10)0.0026 (10)
C40.0480 (15)0.0486 (13)0.0514 (14)−0.0004 (11)−0.0012 (11)0.0169 (11)
C50.0556 (17)0.0388 (12)0.0631 (15)0.0100 (11)0.0071 (12)0.0076 (10)
C60.0573 (16)0.0412 (12)0.0424 (12)0.0060 (10)0.0100 (11)0.0015 (9)
C70.0418 (14)0.0364 (11)0.0418 (11)−0.0014 (10)0.0053 (9)0.0003 (9)
C80.0427 (13)0.0362 (11)0.0357 (11)−0.0038 (9)−0.0014 (9)0.0027 (8)
C90.0463 (15)0.0355 (11)0.0378 (11)−0.0051 (9)0.0004 (10)0.0036 (8)
C100.0428 (14)0.0422 (12)0.0391 (11)−0.0053 (10)−0.0038 (9)0.0042 (9)
C110.0391 (13)0.0406 (11)0.0337 (11)0.0012 (10)0.0025 (9)0.0042 (8)
C120.0390 (13)0.0428 (11)0.0350 (11)0.0039 (10)0.0040 (9)0.0054 (9)
C130.0561 (16)0.0453 (12)0.0478 (13)0.0090 (11)0.0097 (12)0.0138 (10)
C140.0571 (17)0.0631 (16)0.0413 (13)0.0211 (13)0.0025 (12)0.0134 (11)
C150.0471 (16)0.0672 (16)0.0438 (13)0.0075 (12)−0.0066 (11)0.0018 (11)
C160.0488 (15)0.0485 (13)0.0451 (12)−0.0022 (11)−0.0019 (10)0.0041 (10)
S1—C71.736 (2)C10—C111.445 (3)
S1—C81.746 (2)C11—C161.397 (3)
S2—C71.623 (2)C11—C121.402 (3)
O1—C91.216 (3)C12—C131.384 (3)
O2—C121.359 (3)C13—C141.378 (3)
O2—H2A0.8200C14—C151.371 (3)
N1—C71.381 (3)C15—C161.367 (3)
N1—C91.393 (3)C2—H20.9300
N1—C11.448 (3)C3—H30.9300
C1—C61.375 (3)C4—H40.9300
C1—C21.373 (3)C5—H50.9300
C2—C31.384 (3)C6—H60.9300
C3—C41.371 (3)C10—H100.9300
C4—C51.374 (3)C13—H130.9300
C5—C61.384 (3)C14—H140.9300
C8—C91.479 (3)C15—H150.9300
C8—C101.344 (3)C16—H160.9300
C7—S1—C893.20 (10)C11—C12—C13120.7 (2)
C12—O2—H2A109.00O2—C12—C11118.06 (18)
C1—N1—C9121.85 (17)C12—C13—C14120.1 (2)
C7—N1—C9116.78 (17)C13—C14—C15120.5 (2)
C1—N1—C7121.37 (16)C14—C15—C16119.5 (2)
N1—C1—C6119.07 (18)C11—C16—C15122.4 (2)
C2—C1—C6121.6 (2)C1—C2—H2121.00
N1—C1—C2119.28 (19)C3—C2—H2121.00
C1—C2—C3118.9 (2)C2—C3—H3120.00
C2—C3—C4120.1 (2)C4—C3—H3120.00
C3—C4—C5120.5 (2)C3—C4—H4120.00
C4—C5—C6120.1 (2)C5—C4—H4120.00
C1—C6—C5118.8 (2)C4—C5—H5120.00
S1—C7—S2122.00 (13)C6—C5—H5120.00
S1—C7—N1110.23 (15)C1—C6—H6121.00
S2—C7—N1127.77 (16)C5—C6—H6121.00
S1—C8—C9109.54 (15)C8—C10—H10115.00
S1—C8—C10128.64 (17)C11—C10—H10115.00
C9—C8—C10121.8 (2)C12—C13—H13120.00
O1—C9—C8127.4 (2)C14—C13—H13120.00
N1—C9—C8110.11 (18)C13—C14—H14120.00
O1—C9—N1122.45 (19)C15—C14—H14120.00
C8—C10—C11130.6 (2)C14—C15—H15120.00
C10—C11—C16124.3 (2)C16—C15—H15120.00
C12—C11—C16116.97 (19)C11—C16—H16119.00
C10—C11—C12118.71 (19)C15—C16—H16119.00
O2—C12—C13121.3 (2)
C8—S1—C7—S2−179.12 (15)C3—C4—C5—C60.3 (4)
C8—S1—C7—N11.29 (16)C4—C5—C6—C1−1.1 (3)
C7—S1—C8—C90.95 (16)S1—C8—C9—O1177.26 (19)
C7—S1—C8—C10−177.2 (2)S1—C8—C9—N1−2.9 (2)
C7—N1—C1—C2−99.9 (2)C10—C8—C9—O1−4.5 (4)
C7—N1—C1—C678.9 (3)C10—C8—C9—N1175.33 (19)
C9—N1—C1—C280.0 (3)S1—C8—C10—C11−1.9 (4)
C9—N1—C1—C6−101.2 (2)C9—C8—C10—C11−179.8 (2)
C1—N1—C7—S1176.46 (14)C8—C10—C11—C12172.8 (2)
C1—N1—C7—S2−3.1 (3)C8—C10—C11—C16−8.2 (4)
C9—N1—C7—S1−3.5 (2)C10—C11—C12—O2−3.0 (3)
C9—N1—C7—S2176.98 (17)C10—C11—C12—C13177.9 (2)
C1—N1—C9—O14.1 (3)C16—C11—C12—O2177.90 (19)
C1—N1—C9—C8−175.75 (17)C16—C11—C12—C13−1.2 (3)
C7—N1—C9—O1−176.0 (2)C10—C11—C16—C15−178.6 (2)
C7—N1—C9—C84.2 (2)C12—C11—C16—C150.5 (3)
N1—C1—C2—C3178.1 (2)O2—C12—C13—C14−178.7 (2)
C6—C1—C2—C3−0.7 (3)C11—C12—C13—C140.3 (3)
N1—C1—C6—C5−177.6 (2)C12—C13—C14—C151.3 (3)
C2—C1—C6—C51.3 (3)C13—C14—C15—C16−2.0 (3)
C1—C2—C3—C4−0.1 (3)C14—C15—C16—C111.1 (3)
C2—C3—C4—C50.2 (4)
D—H···AD—HH···AD···AD—H···A
C16—H16···S10.932.503.213 (2)133
O2—H2A···O1i0.821.972.767 (2)163
C10—H10···O2i0.932.493.375 (3)160
C2—H2···CgBii0.932.913.774 (2)155
C14—H14···CgBiii0.932.913.515 (2)124
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C16—H16⋯S10.932.503.213 (2)133
O2—H2A⋯O1i0.821.972.767 (2)163
C10—H10⋯O2i0.932.493.375 (3)160
C2—H2⋯CgBii0.932.913.774 (2)155
C14—H14⋯CgBiii0.932.913.515 (2)124

Symmetry codes: (i) ; (ii) ; (iii) . CgB is the centroid of the C1–C6 ring.

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (5Z)-5-(2-Hydroxy-benzyl-idene)-2-thioxo-1,3-thia-zolidin-4-one methanol hemisolvate.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Bushra Iqbal; Sana Naz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

3.  (5E)-5-(4-Hydr-oxy-3-methoxy-benzyl-idene)-2-thioxo-1,3-thia-zolidin-4-one methanol monosolvate.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Maria Saddaf; Sana Majeed
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4.  Structure validation in chemical crystallography.

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  6 in total

1.  3-(3-Methyl-phen-yl)-2-thioxo-1,3-thia-zolidin-4-one.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

2.  (5Z)-5-(2-Methyl-benzyl-idene)-3-phenyl-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Bushra Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-31

3.  3-Cyclo-hexyl-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Asma Yasmeen; Naeem Ahmad; Muhammad Akmal Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

4.  3-(2-Methyl-phen-yl)-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Asma Yasmeen; Naeem Ahmad; Muhammad Akmal Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

5.  (5Z)-5-(2-Hy-droxy-benzyl-idene)-3-(4-methyl-phen-yl)-2-sulfanyl-idene-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Misbah Kashif; Afifa Saeed; Sana Bukhari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19

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