Literature DB >> 21578495

(5Z)-5-(2-Methyl-benzyl-idene)-3-phenyl-2-thioxo-1,3-thia-zolidin-4-one.

Durre Shahwar, M Nawaz Tahir, Muhammad Asam Raza, Bushra Iqbal.   

Abstract

In the title compound, C(17)H(13)NOS(2), the heterocyclic ring is oriented at a dihedral angle of 74.43 (5)° with respect to the anilinic benzene ring and at a dihedral angle of 17.31 (9)° with respect to phenyl ring. An intra-molecular C-H⋯S inter-action occurs, resulting in an S(6) ring. In the crystal, the packing is consolidated by C-H⋯π inter-actions and possible very weak aromatic π-π stacking [centroid-centroid separation = 4.025 (1) Å].

Entities:  

Year:  2009        PMID: 21578495      PMCID: PMC2971373          DOI: 10.1107/S1600536809044304

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Linden et al. (1999 ▶); Shahwar et al. (2009a ▶,b ▶,c ▶). For graph-set theory, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C17H13NOS2 M = 311.40 Monoclinic, a = 9.8317 (4) Å b = 16.6317 (6) Å c = 9.3865 (4) Å β = 93.541 (2)° V = 1531.93 (11) Å3 Z = 4 Mo Kα radiation μ = 0.35 mm−1 T = 296 K 0.40 × 0.30 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.879, T max = 0.941 17261 measured reflections 3807 independent reflections 2879 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.104 S = 1.01 3807 reflections 191 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809044304/hb5181sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809044304/hb5181Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H13NOS2F(000) = 648
Mr = 311.40Dx = 1.350 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3807 reflections
a = 9.8317 (4) Åθ = 2.1–28.3°
b = 16.6317 (6) ŵ = 0.35 mm1
c = 9.3865 (4) ÅT = 296 K
β = 93.541 (2)°Prisms, yellow
V = 1531.93 (11) Å30.40 × 0.30 × 0.18 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer3807 independent reflections
Radiation source: fine-focus sealed tube2879 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 7.40 pixels mm-1θmax = 28.3°, θmin = 2.1°
ω scansh = −13→12
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −13→22
Tmin = 0.879, Tmax = 0.941l = −12→9
17261 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0498P)2 + 0.3691P] where P = (Fo2 + 2Fc2)/3
3807 reflections(Δ/σ)max < 0.001
191 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.95527 (4)0.36087 (3)0.48338 (4)0.0408 (1)
S20.81145 (5)0.25140 (3)0.66855 (5)0.0544 (2)
O10.62790 (12)0.44603 (8)0.30111 (16)0.0590 (5)
N10.69362 (13)0.35311 (8)0.47353 (15)0.0379 (4)
C10.55749 (16)0.32728 (10)0.49995 (18)0.0409 (5)
C20.47556 (18)0.37600 (11)0.5756 (2)0.0508 (6)
C30.3467 (2)0.34908 (14)0.6034 (3)0.0648 (8)
C40.3022 (2)0.27496 (15)0.5571 (3)0.0686 (8)
C50.3841 (2)0.22789 (15)0.4798 (3)0.0774 (9)
C60.5136 (2)0.25369 (12)0.4493 (3)0.0644 (8)
C70.71757 (16)0.41175 (9)0.37026 (18)0.0400 (5)
C80.86629 (15)0.42329 (9)0.36025 (17)0.0358 (5)
C90.80674 (16)0.32015 (9)0.54449 (17)0.0374 (5)
C100.91369 (16)0.47413 (9)0.26411 (18)0.0390 (5)
C111.05266 (15)0.49045 (10)0.22684 (17)0.0383 (5)
C121.07841 (16)0.55752 (10)0.14107 (17)0.0393 (5)
C131.20990 (18)0.56853 (12)0.0986 (2)0.0522 (6)
C141.31437 (18)0.51669 (14)0.1394 (2)0.0591 (7)
C151.29056 (18)0.45192 (13)0.2249 (2)0.0580 (7)
C161.16070 (17)0.43879 (12)0.2676 (2)0.0509 (6)
C170.96876 (19)0.61723 (10)0.0967 (2)0.0500 (6)
H20.506000.426180.607500.0609*
H30.289760.381610.654100.0777*
H40.216350.256760.578350.0823*
H50.352980.178000.447090.0929*
H60.569160.221850.395890.0773*
H100.847020.503790.212930.0468*
H131.227960.612210.040850.0626*
H141.401330.525610.108910.0709*
H151.361210.417250.253650.0695*
H161.144470.394610.324870.0611*
H17A1.005960.658050.038130.0751*
H17B0.934580.641570.180050.0751*
H17C0.895820.590140.043570.0751*
U11U22U33U12U13U23
S10.0330 (2)0.0478 (2)0.0411 (2)0.0007 (2)−0.0014 (2)0.0040 (2)
S20.0639 (3)0.0516 (3)0.0477 (3)−0.0025 (2)0.0028 (2)0.0119 (2)
O10.0342 (6)0.0622 (8)0.0804 (10)0.0084 (6)0.0030 (6)0.0248 (7)
N10.0321 (7)0.0371 (7)0.0450 (8)−0.0012 (5)0.0062 (5)0.0000 (6)
C10.0342 (8)0.0439 (9)0.0451 (9)−0.0024 (7)0.0059 (7)0.0020 (7)
C20.0418 (9)0.0535 (10)0.0578 (11)0.0034 (8)0.0089 (8)−0.0037 (9)
C30.0432 (11)0.0808 (15)0.0722 (14)0.0103 (10)0.0183 (10)0.0057 (12)
C40.0382 (10)0.0817 (15)0.0866 (16)−0.0095 (10)0.0095 (10)0.0170 (13)
C50.0572 (13)0.0668 (14)0.109 (2)−0.0241 (11)0.0110 (13)−0.0107 (14)
C60.0501 (11)0.0584 (12)0.0864 (16)−0.0107 (9)0.0177 (11)−0.0182 (11)
C70.0341 (8)0.0369 (8)0.0495 (9)0.0031 (6)0.0066 (7)0.0013 (7)
C80.0321 (8)0.0346 (8)0.0408 (8)0.0034 (6)0.0023 (6)−0.0016 (6)
C90.0396 (8)0.0364 (8)0.0363 (8)−0.0013 (6)0.0035 (6)−0.0048 (6)
C100.0330 (8)0.0390 (8)0.0451 (9)0.0053 (6)0.0026 (7)0.0011 (7)
C110.0330 (8)0.0445 (8)0.0374 (8)0.0006 (7)0.0025 (6)−0.0017 (7)
C120.0378 (8)0.0421 (8)0.0379 (9)−0.0053 (7)0.0022 (7)−0.0042 (7)
C130.0482 (10)0.0555 (11)0.0535 (11)−0.0121 (8)0.0076 (8)0.0006 (9)
C140.0343 (9)0.0815 (14)0.0623 (12)−0.0096 (9)0.0106 (8)−0.0051 (11)
C150.0336 (9)0.0813 (14)0.0589 (12)0.0108 (9)0.0014 (8)0.0055 (10)
C160.0383 (9)0.0640 (12)0.0508 (10)0.0069 (8)0.0060 (8)0.0122 (9)
C170.0530 (10)0.0416 (9)0.0556 (11)−0.0013 (8)0.0043 (8)0.0059 (8)
S1—C81.7476 (16)C12—C131.388 (2)
S1—C91.7389 (16)C12—C171.506 (2)
S2—C91.6306 (16)C13—C141.377 (3)
O1—C71.205 (2)C14—C151.372 (3)
N1—C11.442 (2)C15—C161.379 (2)
N1—C71.405 (2)C2—H20.9300
N1—C91.375 (2)C3—H30.9300
C1—C21.371 (2)C4—H40.9300
C1—C61.373 (3)C5—H50.9300
C2—C31.384 (3)C6—H60.9300
C3—C41.370 (3)C10—H100.9300
C4—C51.364 (3)C13—H130.9300
C5—C61.390 (3)C14—H140.9300
C7—C81.483 (2)C15—H150.9300
C8—C101.341 (2)C16—H160.9300
C10—C111.457 (2)C17—H17A0.9600
C11—C121.408 (2)C17—H17B0.9600
C11—C161.401 (2)C17—H17C0.9600
C8—S1—C993.05 (7)C13—C14—C15120.20 (17)
C1—N1—C7121.49 (13)C14—C15—C16119.26 (18)
C1—N1—C9121.99 (13)C11—C16—C15121.57 (18)
C7—N1—C9116.49 (13)C1—C2—H2121.00
N1—C1—C2119.62 (15)C3—C2—H2121.00
N1—C1—C6118.77 (15)C2—C3—H3120.00
C2—C1—C6121.60 (16)C4—C3—H3120.00
C1—C2—C3118.72 (18)C3—C4—H4120.00
C2—C3—C4120.6 (2)C5—C4—H4120.00
C3—C4—C5119.9 (2)C4—C5—H5120.00
C4—C5—C6120.7 (2)C6—C5—H5120.00
C1—C6—C5118.4 (2)C1—C6—H6121.00
O1—C7—N1123.48 (15)C5—C6—H6121.00
O1—C7—C8126.56 (15)C8—C10—H10115.00
N1—C7—C8109.96 (13)C11—C10—H10115.00
S1—C8—C7109.66 (11)C12—C13—H13119.00
S1—C8—C10129.72 (12)C14—C13—H13119.00
C7—C8—C10120.60 (14)C13—C14—H14120.00
S1—C9—S2121.42 (10)C15—C14—H14120.00
S1—C9—N1110.83 (11)C14—C15—H15120.00
S2—C9—N1127.74 (12)C16—C15—H15120.00
C8—C10—C11130.48 (15)C11—C16—H16119.00
C10—C11—C12119.31 (14)C15—C16—H16119.00
C10—C11—C16121.79 (15)C12—C17—H17A109.00
C12—C11—C16118.82 (14)C12—C17—H17B109.00
C11—C12—C13118.18 (15)C12—C17—H17C109.00
C11—C12—C17122.00 (14)H17A—C17—H17B109.00
C13—C12—C17119.81 (15)H17A—C17—H17C109.00
C12—C13—C14121.96 (18)H17B—C17—H17C109.00
C9—S1—C8—C70.70 (12)C3—C4—C5—C61.1 (4)
C9—S1—C8—C10−177.47 (16)C4—C5—C6—C10.6 (4)
C8—S1—C9—S2179.23 (11)O1—C7—C8—S1179.38 (15)
C8—S1—C9—N1−0.06 (13)O1—C7—C8—C10−2.3 (3)
C7—N1—C1—C2−75.8 (2)N1—C7—C8—S1−1.15 (16)
C7—N1—C1—C6104.8 (2)N1—C7—C8—C10177.21 (14)
C9—N1—C1—C2106.26 (19)S1—C8—C10—C113.5 (3)
C9—N1—C1—C6−73.2 (2)C7—C8—C10—C11−174.47 (16)
C1—N1—C7—O12.6 (2)C8—C10—C11—C12−168.06 (17)
C1—N1—C7—C8−176.90 (14)C8—C10—C11—C1615.4 (3)
C9—N1—C7—O1−179.33 (16)C10—C11—C12—C13−175.47 (16)
C9—N1—C7—C81.18 (19)C10—C11—C12—C175.4 (2)
C1—N1—C9—S1177.41 (12)C16—C11—C12—C131.1 (2)
C1—N1—C9—S2−1.8 (2)C16—C11—C12—C17−178.04 (16)
C7—N1—C9—S1−0.66 (17)C10—C11—C16—C15176.08 (17)
C7—N1—C9—S2−179.90 (13)C12—C11—C16—C15−0.5 (3)
N1—C1—C2—C3−178.13 (18)C11—C12—C13—C14−0.8 (3)
C6—C1—C2—C31.3 (3)C17—C12—C13—C14178.36 (17)
N1—C1—C6—C5177.6 (2)C12—C13—C14—C15−0.2 (3)
C2—C1—C6—C5−1.8 (3)C13—C14—C15—C160.9 (3)
C1—C2—C3—C40.5 (3)C14—C15—C16—C11−0.6 (3)
C2—C3—C4—C5−1.6 (4)
D—H···AD—HH···AD···AD—H···A
C16—H16···S10.932.523.2197 (19)133
C17—H17C···CgCi0.962.723.569 (2)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C16—H16⋯S10.932.523.2197 (19)133
C17—H17C⋯CgCi0.962.723.569 (2)148

Symmetry code: (i) . CgC is the centroid of C11–C16 benzene ring.

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (5Z)-5-(2-Hydroxy-benzyl-idene)-3-phenyl-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Bushra Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

3.  (5Z)-5-(2-Hydroxy-benzyl-idene)-2-thioxo-1,3-thia-zolidin-4-one methanol hemisolvate.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Bushra Iqbal; Sana Naz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

4.  (5E)-5-(4-Hydr-oxy-3-methoxy-benzyl-idene)-2-thioxo-1,3-thia-zolidin-4-one methanol monosolvate.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Maria Saddaf; Sana Majeed
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  3 in total

1.  3-Benzyl-5-benzyl-idene-2-sulfanylidene-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; Muhammad Asam Raza; Saherish Aslam; Sumbal Mehmood; Sidra Tariq; Abdullah M Asiri
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23

2.  2-Imino-3-(2-nitro-phen-yl)-1,3-thia-zolidin-4-one.

Authors:  Muhammad Zia-Ur-Rehman; Mark R J Elsegood; Muhammad Nadeem Arshad; Abdullah M Asiri
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14

3.  (5Z)-5-(2-Hy-droxy-benzyl-idene)-3-(4-methyl-phen-yl)-2-sulfanyl-idene-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Misbah Kashif; Afifa Saeed; Sana Bukhari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19
  3 in total

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