Literature DB >> 22719590

(5Z)-5-(2-Hy-droxy-benzyl-idene)-3-(4-methyl-phen-yl)-2-sulfanyl-idene-1,3-thia-zolidin-4-one.

Durre Shahwar, M Nawaz Tahir, Misbah Kashif, Afifa Saeed, Sana Bukhari.   

Abstract

In the title compound, C(17)H(13)NO(2)S(2), the dihedral angles between the 2-sulfanyl-idene-1,3-thia-zolidin-4-one group and the pendant toluene and 2-hy-droxy-benzene rings are 74.62 (6) and 8.73 (12)°, respectively. An intra-molecular C-H⋯S inter-action occurs. In the crystal, inversion dimers linked by pairs of O-H⋯O hydrogen bonds generate R(2) (2)(16) loops. This link is reinforced by a pair of C-H⋯O hydrogen bonds. The dimers are connected by weak C-H⋯S inter-actions.

Entities:  

Year:  2012        PMID: 22719590      PMCID: PMC3379392          DOI: 10.1107/S1600536812021630

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures and further synthetic details, see: Shahwar et al. (2009 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C17H13NO2S2 M = 327.40 Monoclinic, a = 13.8258 (6) Å b = 5.4278 (3) Å c = 21.0715 (9) Å β = 101.857 (3)° V = 1547.54 (13) Å3 Z = 4 Mo Kα radiation μ = 0.35 mm−1 T = 296 K 0.35 × 0.15 × 0.13 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.945, T max = 0.965 10652 measured reflections 2801 independent reflections 1473 reflections with I > 2σ(I) R int = 0.069

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.101 S = 0.93 2801 reflections 201 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812021630/hb6792sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812021630/hb6792Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812021630/hb6792Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H13NO2S2F(000) = 680
Mr = 327.40Dx = 1.405 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1473 reflections
a = 13.8258 (6) Åθ = 3.0–25.3°
b = 5.4278 (3) ŵ = 0.35 mm1
c = 21.0715 (9) ÅT = 296 K
β = 101.857 (3)°Needle, yellow
V = 1547.54 (13) Å30.35 × 0.15 × 0.13 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2801 independent reflections
Radiation source: fine-focus sealed tube1473 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.069
Detector resolution: 8.20 pixels mm-1θmax = 25.3°, θmin = 3.0°
ω scansh = −16→16
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −6→6
Tmin = 0.945, Tmax = 0.965l = −25→25
10652 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H-atom parameters constrained
S = 0.93w = 1/[σ2(Fo2) + (0.0385P)2] where P = (Fo2 + 2Fc2)/3
2801 reflections(Δ/σ)max < 0.001
201 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.32730 (6)0.24641 (18)0.08942 (4)0.0555 (3)
S20.14244 (6)−0.0283 (2)0.04718 (4)0.0633 (4)
O10.28996 (14)0.6397 (4)−0.06441 (10)0.0510 (8)
O20.57469 (16)1.0037 (5)0.06997 (10)0.0773 (10)
N10.21224 (16)0.3302 (5)−0.02022 (11)0.0383 (9)
C10.1268 (2)0.3173 (6)−0.07351 (14)0.0387 (11)
C20.1162 (2)0.1227 (7)−0.11500 (14)0.0486 (13)
C30.0316 (2)0.1030 (7)−0.16312 (14)0.0531 (14)
C4−0.0423 (2)0.2766 (7)−0.16993 (15)0.0486 (13)
C5−0.0286 (2)0.4723 (7)−0.12792 (17)0.0598 (14)
C60.0553 (2)0.4943 (7)−0.07940 (15)0.0534 (12)
C7−0.1379 (2)0.2463 (7)−0.21949 (16)0.0805 (16)
C80.2200 (2)0.1799 (6)0.03366 (14)0.0436 (11)
C90.2879 (2)0.5003 (7)−0.01944 (15)0.0404 (11)
C100.3612 (2)0.4829 (6)0.04263 (13)0.0408 (10)
C110.4379 (2)0.6400 (6)0.05800 (13)0.0418 (11)
C120.5128 (2)0.6614 (6)0.11718 (13)0.0391 (11)
C130.5208 (2)0.5059 (7)0.17093 (14)0.0530 (14)
C140.5919 (2)0.5422 (7)0.22614 (15)0.0592 (14)
C150.6561 (2)0.7355 (7)0.22960 (15)0.0564 (14)
C160.6513 (2)0.8925 (7)0.17828 (15)0.0520 (13)
C170.5808 (2)0.8546 (6)0.12202 (14)0.0446 (11)
H20.165390.00361−0.111090.0582*
H2A0.621571.099410.076230.0928*
H30.02469−0.03032−0.191410.0637*
H5−0.076930.59368−0.132130.0718*
H60.062900.62792−0.051180.0641*
H7A−0.128820.12593−0.251150.1208*
H7B−0.156150.40109−0.240580.1208*
H7C−0.189160.19251−0.198130.1208*
H110.443770.752260.025680.0501*
H130.477040.374870.169280.0640*
H140.596390.435280.261100.0709*
H150.703550.760610.267270.0677*
H160.695161.023950.181090.0625*
U11U22U33U12U13U23
S10.0601 (5)0.0596 (7)0.0403 (5)−0.0257 (5)−0.0047 (4)0.0102 (5)
S20.0689 (6)0.0671 (8)0.0527 (5)−0.0349 (6)0.0096 (4)0.0025 (5)
O10.0484 (13)0.0539 (16)0.0449 (13)−0.0174 (12)−0.0037 (11)0.0132 (13)
O20.0795 (18)0.087 (2)0.0509 (14)−0.0543 (16)−0.0205 (12)0.0243 (16)
N10.0362 (14)0.0385 (18)0.0362 (14)−0.0112 (14)−0.0015 (12)0.0016 (14)
C10.0347 (17)0.041 (2)0.0385 (18)−0.0079 (18)0.0031 (15)0.0005 (18)
C20.0429 (19)0.053 (3)0.0473 (19)0.0042 (19)0.0032 (17)−0.006 (2)
C30.057 (2)0.056 (3)0.0422 (19)−0.011 (2)0.0009 (18)−0.0158 (19)
C40.0417 (19)0.056 (3)0.0441 (19)−0.011 (2)−0.0002 (16)0.011 (2)
C50.049 (2)0.050 (3)0.075 (2)0.006 (2)0.000 (2)0.007 (2)
C60.053 (2)0.043 (2)0.060 (2)−0.005 (2)0.0019 (18)−0.013 (2)
C70.055 (2)0.112 (4)0.061 (2)−0.014 (2)−0.0196 (18)0.012 (3)
C80.0447 (18)0.044 (2)0.0401 (18)−0.0132 (18)0.0042 (15)−0.0036 (18)
C90.0370 (18)0.040 (2)0.0431 (19)−0.0070 (18)0.0054 (16)−0.0045 (19)
C100.0372 (17)0.047 (2)0.0363 (17)−0.0089 (18)0.0032 (14)0.0034 (18)
C110.0417 (18)0.044 (2)0.0374 (17)−0.0101 (18)0.0026 (15)0.0061 (17)
C120.0345 (17)0.042 (2)0.0379 (18)−0.0092 (18)0.0007 (15)0.0006 (18)
C130.052 (2)0.053 (3)0.047 (2)−0.014 (2)−0.0059 (17)0.008 (2)
C140.064 (2)0.061 (3)0.044 (2)−0.012 (2)−0.0091 (18)0.014 (2)
C150.056 (2)0.066 (3)0.0393 (19)−0.008 (2)−0.0089 (17)−0.002 (2)
C160.0414 (18)0.062 (3)0.046 (2)−0.0162 (19)−0.0066 (16)−0.002 (2)
C170.0452 (19)0.047 (2)0.0386 (18)−0.0076 (19)0.0016 (16)0.0036 (19)
S1—C81.731 (3)C12—C171.398 (4)
S1—C101.741 (3)C12—C131.399 (4)
S2—C81.623 (3)C13—C141.374 (4)
O1—C91.218 (4)C14—C151.367 (5)
O2—C171.352 (4)C15—C161.368 (5)
O2—H2A0.8200C16—C171.387 (4)
N1—C11.455 (4)C2—H20.9300
N1—C91.393 (4)C3—H30.9300
N1—C81.384 (4)C5—H50.9300
C1—C21.360 (5)C6—H60.9300
C1—C61.366 (5)C7—H7A0.9600
C2—C31.386 (4)C7—H7B0.9600
C3—C41.376 (5)C7—H7C0.9600
C4—C51.371 (5)C11—H110.9300
C4—C71.516 (4)C13—H130.9300
C5—C61.385 (4)C14—H140.9300
C9—C101.484 (4)C15—H150.9300
C10—C111.347 (4)C16—H160.9300
C11—C121.453 (4)
C8—S1—C1093.57 (14)C14—C15—C16120.7 (3)
C17—O2—H2A109.00C15—C16—C17119.7 (3)
C1—N1—C8121.2 (2)O2—C17—C16121.4 (3)
C1—N1—C9122.0 (2)C12—C17—C16121.2 (3)
C8—N1—C9116.7 (2)O2—C17—C12117.5 (3)
N1—C1—C6119.6 (3)C1—C2—H2120.00
C2—C1—C6120.5 (3)C3—C2—H2120.00
N1—C1—C2119.8 (3)C2—C3—H3119.00
C1—C2—C3119.6 (3)C4—C3—H3119.00
C2—C3—C4121.4 (3)C4—C5—H5119.00
C3—C4—C7121.4 (3)C6—C5—H5119.00
C5—C4—C7121.0 (3)C1—C6—H6120.00
C3—C4—C5117.5 (3)C5—C6—H6120.00
C4—C5—C6121.8 (3)C4—C7—H7A109.00
C1—C6—C5119.2 (3)C4—C7—H7B109.00
S1—C8—S2122.09 (18)C4—C7—H7C109.00
S1—C8—N1110.2 (2)H7A—C7—H7B109.00
S2—C8—N1127.7 (2)H7A—C7—H7C109.00
O1—C9—N1122.7 (3)H7B—C7—H7C110.00
O1—C9—C10127.2 (3)C10—C11—H11115.00
N1—C9—C10110.1 (3)C12—C11—H11115.00
S1—C10—C11128.4 (2)C12—C13—H13119.00
C9—C10—C11122.2 (3)C14—C13—H13119.00
S1—C10—C9109.4 (2)C13—C14—H14120.00
C10—C11—C12130.1 (3)C15—C14—H14120.00
C11—C12—C17118.2 (3)C14—C15—H15120.00
C13—C12—C17117.0 (3)C16—C15—H15120.00
C11—C12—C13124.8 (3)C15—C16—H16120.00
C12—C13—C14121.5 (3)C17—C16—H16120.00
C13—C14—C15119.9 (3)
C10—S1—C8—S2−177.0 (2)C3—C4—C5—C6−1.2 (5)
C10—S1—C8—N11.8 (2)C7—C4—C5—C6175.5 (3)
C8—S1—C10—C9−2.5 (2)C4—C5—C6—C10.5 (5)
C8—S1—C10—C11174.7 (3)O1—C9—C10—S1−177.6 (3)
C8—N1—C1—C2−73.7 (4)O1—C9—C10—C115.0 (5)
C8—N1—C1—C6102.9 (4)N1—C9—C10—S12.6 (3)
C9—N1—C1—C2109.1 (4)N1—C9—C10—C11−174.8 (3)
C9—N1—C1—C6−74.3 (4)S1—C10—C11—C12−1.0 (5)
C1—N1—C8—S1−177.9 (2)C9—C10—C11—C12175.9 (3)
C1—N1—C8—S20.9 (4)C10—C11—C12—C132.8 (5)
C9—N1—C8—S1−0.6 (3)C10—C11—C12—C17−175.5 (3)
C9—N1—C8—S2178.2 (2)C11—C12—C13—C14−177.9 (3)
C1—N1—C9—O1−3.8 (5)C17—C12—C13—C140.4 (5)
C1—N1—C9—C10176.0 (3)C11—C12—C17—O2−2.6 (4)
C8—N1—C9—O1178.9 (3)C11—C12—C17—C16177.0 (3)
C8—N1—C9—C10−1.4 (4)C13—C12—C17—O2179.0 (3)
N1—C1—C2—C3175.8 (3)C13—C12—C17—C16−1.5 (4)
C6—C1—C2—C3−0.7 (5)C12—C13—C14—C150.7 (5)
N1—C1—C6—C5−176.1 (3)C13—C14—C15—C16−0.8 (5)
C2—C1—C6—C50.5 (5)C14—C15—C16—C17−0.3 (5)
C1—C2—C3—C40.0 (5)C15—C16—C17—O2−179.0 (3)
C2—C3—C4—C51.0 (5)C15—C16—C17—C121.4 (5)
C2—C3—C4—C7−175.7 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2A···O1i0.821.922.712 (3)162
C6—H6···S2ii0.932.843.736 (4)163
C11—H11···O2i0.932.383.294 (4)167
C13—H13···S10.932.483.194 (3)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2A⋯O1i0.821.922.712 (3)162
C6—H6⋯S2ii0.932.843.736 (4)163
C11—H11⋯O2i0.932.383.294 (4)167
C13—H13⋯S10.932.483.194 (3)133

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (5Z)-5-(2-Hydroxy-benzyl-idene)-3-phenyl-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Bushra Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

3.  (5Z)-5-(2-Methyl-benzyl-idene)-3-phenyl-2-thioxo-1,3-thia-zolidin-4-one.

Authors:  Durre Shahwar; M Nawaz Tahir; Muhammad Asam Raza; Bushra Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-31

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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