Literature DB >> 21577407

catena-Poly[[bis-(2-hydr-oxy-2-phenyl-acetato-κO,O)zinc(II)]-μ-1,2-di-4-pyridylethane-κN:N'].

Seung Man Yu, Dong Hoon Shin, Pan-Gi Kim, Cheal Kim, Youngmee Kim.   

Abstract

The title compound, [Zn(C(8)H(6)O(3))(2)(C(12)H(12)N(2))](n), consists of [Zn(Hopa)(2)] (H(2)opa = 2-hydr-oxy-2-phenyl-acetic acid or mandelic acid) units bridged by 1,2-di-4-pyridylethane (bpe) ligands, forming a polymeric chain developing parallel to the b axis. The bridging bpe ligand is arranged around a twofold axis passing through the middle of the ethane C-C bond. The geometry around the Zn(II) ion is distorted octa-hedral, constructed by four O atoms from two Hopa(-) ligands and two N atoms from two bridging bpe ligands. O-H⋯O hydrogen bonds link the chains, forming a three-dimensional network.

Entities:  

Year:  2009        PMID: 21577407      PMCID: PMC2969950          DOI: 10.1107/S1600536809030281

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Transition metal ions are the major cationic contributors to the inorganic composition of natural water and biological fluids, see: Daniele et al. (2008 ▶). For related structures, see: Balboa et al. (2008 ▶); Beghidja et al. (2005 ▶); Hao et al. (2009 ▶); Lee et al. (2008 ▶); Park et al. (2008 ▶); Shin et al. (2009 ▶); Wermester et al. (2007 ▶); Yu et al. (2008 ▶).

Experimental

Crystal data

[Zn(C8H6O3)2(C12H12N2)] M = 551.90 Hexagonal, a = 11.1360 (6) Å c = 33.110 (3) Å V = 3555.9 (4) Å3 Z = 6 Mo Kα radiation μ = 1.09 mm−1 T = 293 K 0.10 × 0.05 × 0.05 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.933, T max = 0.944 17715 measured reflections 2347 independent reflections 2045 reflections with I > 2σ(I) R int = 0.077

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.068 S = 1.04 2347 reflections 168 parameters 1 restraint H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 870 Friedel pairs Flack parameter: −0.002 (16) Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809030281/dn2478sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809030281/dn2478Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C8H6O3)2(C12H12N2)]Dx = 1.546 Mg m3
Mr = 551.90Mo Kα radiation, λ = 0.71073 Å
Hexagonal, P6122Cell parameters from 1751 reflections
Hall symbol: P 61 2 (0 0 -1)θ = 2.2–18.9°
a = 11.1360 (6) ŵ = 1.09 mm1
c = 33.110 (3) ÅT = 293 K
V = 3555.9 (4) Å3Rod, colorless
Z = 60.10 × 0.05 × 0.05 mm
F(000) = 1716
Bruker SMART CCD diffractometer2347 independent reflections
Radiation source: fine-focus sealed tube2045 reflections with I > 2σ(I)
graphiteRint = 0.077
φ and ω scansθmax = 26.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −13→13
Tmin = 0.933, Tmax = 0.944k = −11→13
17715 measured reflectionsl = −40→28
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.068w = 1/[σ2(Fo2) + (0.016P)2 + 1.0575P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
2347 reflectionsΔρmax = 0.22 e Å3
168 parametersΔρmin = −0.21 e Å3
1 restraintAbsolute structure: Flack (1983), 870 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.002 (16)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.73603 (4)0.86802 (2)0.08330.01944 (12)
O110.76202 (18)0.84579 (18)0.02239 (5)0.0216 (4)
O120.89644 (18)0.82448 (18)−0.02384 (5)0.0245 (5)
O130.89365 (17)0.81243 (17)0.08319 (5)0.0233 (4)
H13O0.95680.84330.10130.035*
N210.5928 (2)0.9386 (2)0.07376 (7)0.0223 (5)
C110.8619 (3)0.8302 (2)0.01183 (8)0.0191 (6)
C120.9540 (3)0.8194 (3)0.04470 (8)0.0179 (6)
H121.04480.90430.04380.022*
C130.9761 (3)0.6975 (3)0.03869 (8)0.0201 (6)
C141.1078 (3)0.7159 (3)0.03588 (9)0.0284 (7)
H141.18390.80520.03680.034*
C151.1293 (4)0.6038 (4)0.03167 (10)0.0394 (8)
H151.21890.61850.02950.047*
C161.0181 (4)0.4716 (4)0.03078 (10)0.0423 (9)
H161.03160.39600.02830.051*
C170.8862 (4)0.4520 (3)0.03359 (9)0.0382 (8)
H170.81050.36240.03280.046*
C180.8639 (3)0.5636 (3)0.03754 (8)0.0280 (6)
H180.77410.54860.03940.034*
C210.6235 (3)1.0429 (3)0.04786 (9)0.0310 (8)
H210.70181.07420.03170.037*
C220.5445 (3)1.1057 (3)0.04412 (10)0.0357 (8)
H220.56821.17570.02520.043*
C230.4294 (3)1.0642 (3)0.06862 (10)0.0289 (7)
C240.4001 (3)0.9599 (3)0.09618 (9)0.0288 (7)
H240.32510.92990.11360.035*
C250.4832 (3)0.9009 (3)0.09751 (8)0.0252 (6)
H250.46130.83040.11610.030*
C260.3364 (3)1.1263 (3)0.06523 (12)0.0520 (11)
H26A0.24221.05170.06070.062*
H26B0.36411.18570.04160.062*
U11U22U33U12U13U23
Zn10.0209 (2)0.01972 (17)0.0181 (2)0.01044 (12)0.000−0.00108 (18)
O110.0248 (10)0.0247 (10)0.0185 (10)0.0148 (8)−0.0010 (8)0.0008 (8)
O120.0311 (12)0.0325 (11)0.0154 (10)0.0200 (9)0.0007 (9)0.0017 (8)
O130.0270 (10)0.0352 (10)0.0135 (9)0.0198 (9)−0.0050 (9)−0.0048 (8)
N210.0218 (12)0.0224 (12)0.0213 (14)0.0101 (10)0.0011 (10)0.0006 (10)
C110.0231 (13)0.0141 (14)0.0176 (15)0.0074 (12)−0.0024 (13)−0.0004 (11)
C120.0190 (13)0.0189 (13)0.0142 (14)0.0083 (10)−0.0012 (11)−0.0025 (11)
C130.0274 (15)0.0231 (15)0.0113 (13)0.0137 (12)−0.0034 (11)0.0004 (12)
C140.0297 (17)0.0309 (16)0.0296 (18)0.0189 (14)−0.0055 (13)−0.0065 (14)
C150.048 (2)0.057 (2)0.0319 (19)0.040 (2)−0.0055 (17)−0.0054 (17)
C160.080 (3)0.049 (2)0.0260 (18)0.053 (2)−0.0044 (18)−0.0044 (16)
C170.062 (2)0.0242 (17)0.0226 (17)0.0172 (17)−0.0001 (16)−0.0020 (14)
C180.0350 (16)0.0237 (16)0.0215 (15)0.0117 (14)−0.0015 (14)−0.0003 (13)
C210.0241 (16)0.0359 (18)0.0286 (18)0.0118 (14)0.0005 (13)0.0089 (14)
C220.0329 (18)0.0310 (18)0.0393 (19)0.0131 (16)−0.0083 (15)0.0094 (14)
C230.0298 (17)0.0265 (15)0.0344 (19)0.0172 (14)−0.0179 (14)−0.0153 (14)
C240.0275 (17)0.0359 (18)0.0293 (17)0.0206 (14)0.0010 (13)−0.0039 (14)
C250.0306 (16)0.0239 (16)0.0219 (15)0.0143 (12)0.0033 (13)0.0018 (12)
C260.039 (2)0.0319 (17)0.093 (3)0.0242 (16)−0.0356 (19)−0.0234 (19)
Zn1—O112.0707 (17)C15—C161.371 (5)
Zn1—O11i2.0707 (17)C15—H150.9300
Zn1—N212.125 (2)C16—C171.376 (5)
Zn1—N21i2.125 (2)C16—H160.9300
Zn1—O13i2.1332 (17)C17—C181.390 (4)
Zn1—O132.1332 (17)C17—H170.9300
O11—C111.258 (3)C18—H180.9300
O12—C111.254 (3)C21—C221.376 (4)
O13—C121.425 (3)C21—H210.9300
O13—H13O0.8543C22—C231.386 (4)
N21—C251.332 (3)C22—H220.9300
N21—C211.344 (3)C23—C241.381 (4)
C11—C121.541 (4)C23—C261.511 (4)
C12—C131.509 (4)C24—C251.378 (4)
C12—H120.9800C24—H240.9300
C13—C141.379 (4)C25—H250.9300
C13—C181.387 (4)C26—C26ii1.519 (7)
C14—C151.390 (4)C26—H26A0.9700
C14—H140.9300C26—H26B0.9700
O11—Zn1—O11i166.10 (10)C13—C14—H14119.3
O11—Zn1—N2194.27 (8)C15—C14—H14119.3
O11i—Zn1—N2194.75 (8)C16—C15—C14119.8 (3)
O11—Zn1—N21i94.75 (8)C16—C15—H15120.1
O11i—Zn1—N21i94.27 (8)C14—C15—H15120.1
N21—Zn1—N21i98.92 (11)C15—C16—C17119.3 (3)
O11—Zn1—O13i92.80 (7)C15—C16—H16120.4
O11i—Zn1—O13i77.21 (7)C17—C16—H16120.4
N21—Zn1—O13i86.60 (7)C16—C17—C18121.2 (3)
N21i—Zn1—O13i170.28 (8)C16—C17—H17119.4
O11—Zn1—O1377.21 (7)C18—C17—H17119.4
O11i—Zn1—O1392.80 (7)C13—C18—C17119.8 (3)
N21—Zn1—O13170.28 (8)C13—C18—H18120.1
N21i—Zn1—O1386.60 (7)C17—C18—H18120.1
O13i—Zn1—O1389.11 (9)N21—C21—C22123.1 (3)
C11—O11—Zn1118.26 (16)N21—C21—H21118.5
C12—O13—Zn1114.85 (15)C22—C21—H21118.5
C12—O13—H13O109.5C21—C22—C23119.8 (3)
Zn1—O13—H13O120.8C21—C22—H22120.1
C25—N21—C21116.5 (2)C23—C22—H22120.1
C25—N21—Zn1122.35 (18)C24—C23—C22117.2 (3)
C21—N21—Zn1120.11 (19)C24—C23—C26120.4 (3)
O12—C11—O11125.7 (3)C22—C23—C26122.4 (3)
O12—C11—C12115.4 (2)C25—C24—C23119.3 (3)
O11—C11—C12118.9 (2)C25—C24—H24120.4
O13—C12—C13110.7 (2)C23—C24—H24120.4
O13—C12—C11108.8 (2)N21—C25—C24124.0 (3)
C13—C12—C11113.0 (2)N21—C25—H25118.0
O13—C12—H12108.1C24—C25—H25118.0
C13—C12—H12108.1C23—C26—C26ii115.7 (3)
C11—C12—H12108.1C23—C26—H26A108.4
C14—C13—C18118.5 (3)C26ii—C26—H26A108.4
C14—C13—C12121.0 (3)C23—C26—H26B108.4
C18—C13—C12120.4 (2)C26ii—C26—H26B108.4
C13—C14—C15121.4 (3)H26A—C26—H26B107.4
D—H···AD—HH···AD···AD—H···A
O13—H13O···O12iii0.851.772.619 (3)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O13—H13O⋯O12i0.851.772.619 (3)173

Symmetry code: (i) .

  6 in total

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5.  Tetra-μ-benzoato-bis-[(quinoxaline)copper(II)].

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  9 in total

1.  Tetra-μ-benzoato-bis-{[trans-1-(2-pyrid-yl)-2-(4-pyrid-yl)ethyl-ene]zinc(II)}.

Authors:  Young Joo Song; Soo-Won Lee; Kyung Hwan Jang; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-04

2.  Tetra-μ-benzoato-bis-{[4-(pyrrolidin-1-yl)pyridine]zinc(II)}.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-18

4.  Dibenzoatobis[3-(pyrrol-1-ylmeth-yl)pyridine]-zinc(II).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-21

5.  catena-Poly[[tetra-aqua-[trans-1,2-bis-(4-pyrid-yl)ethene-κN:N']nickel(II)] dinitrate].

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-02

6.  Bis(methanol-κO)bis-(quinoline-2-carboxyl-ato-κN,O)nickel(II).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-12

7.  Bis(μ-3-carb-oxy-2-hy-droxy-propane-1,2-dicarboxyl-ato)bis(diaquazinc)-1,2-bis-(pyridin-4-yl)ethene-water (1/1/2).

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8.  Bis(μ-2-carboxymethyl-2-hydroxy-butane-dioato)bis-[diaqua-manganese(II)]-1,2-bis-(pyridin-4-yl)ethane-water (1/1/2).

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