Literature DB >> 21578547

Tetra-μ-benzoato-bis-{[trans-1-(2-pyrid-yl)-2-(4-pyrid-yl)ethyl-ene]zinc(II)}.

Young Joo Song, Soo-Won Lee, Kyung Hwan Jang, Cheal Kim, Youngmee Kim.   

Abstract

The paddle-wheel-type centrosymmetric dinuclear title complex, [Zn(2)(C(7)H(5)O(2))(4)(C(12)H(10)N(2))(2)], contains four bridging benzoate groups and two terminal trans-1-(2-pyrid-yl)-2-(4-pyrid-yl)ethyl-ene (L) ligands. The inversion center is located between the two Zn(II) atoms. The octa-hedral coordination around the Zn(II) atom, with four O atoms in the equatorial plane, is completed by an N atom of the L mol-ecule [Zn-N = 2.0198 (15) Å] and by the second Zn(II) atom [ZnZn = 2.971 (8) Å]. The Zn(II) atom is 0.372 Å out of the plane of the four coordinating O atoms.

Entities:  

Year:  2009        PMID: 21578547      PMCID: PMC2972024          DOI: 10.1107/S1600536809045048

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures containing [Zn2(O2CPh)4], see: Necefoglu et al. (2002 ▶); Zeleňák et al. (2004 ▶); Karmakar et al. (2006 ▶); Ohmura et al. (2005 ▶). For the structures of copper(II) and zinc(II) benzoates with quinoxaline, 6-methyl­quinoline, 3-methyl­quinoline, and di-2-pyridyl ketone, see: Lee et al. (2008 ▶); Yu et al. (2008 ▶, 2009 ▶); Park et al. (2008 ▶); Shin et al. (2009 ▶). For transition metal ions as the major cation contributors to the inorganic composition of natural water and biological fluids, see: Daniele et al. (2008 ▶); Parkin (2004 ▶); Tshuva & Lippard (2004 ▶).

Experimental

Crystal data

[Zn2(C7H5O2)4(C12H10N2)2] M = 979.66 Monoclinic, a = 24.919 (6) Å b = 12.186 (3) Å c = 15.742 (4) Å β = 109.857 (4)° V = 4496.0 (19) Å3 Z = 4 Mo Kα radiation μ = 1.13 mm−1 T = 293 K 0.20 × 0.15 × 0.15 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.816, T max = 0.884 12326 measured reflections 4416 independent reflections 2947 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.090 S = 1.03 4416 reflections 298 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809045048/dn2505sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809045048/dn2505Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn2(C7H5O2)4(C12H10N2)2]F(000) = 2016
Mr = 979.66Dx = 1.447 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1818 reflections
a = 24.919 (6) Åθ = 2.5–19.6°
b = 12.186 (3) ŵ = 1.13 mm1
c = 15.742 (4) ÅT = 293 K
β = 109.857 (4)°Block, colorless
V = 4496.0 (19) Å30.20 × 0.15 × 0.15 mm
Z = 4
Bruker SMART CCD diffractometer4416 independent reflections
Radiation source: fine-focus sealed tube2947 reflections with I > 2σ(I)
graphiteRint = 0.039
φ and ω scansθmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −20→30
Tmin = 0.816, Tmax = 0.884k = −15→15
12326 measured reflectionsl = −19→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0205P)2 + 1.48P] where P = (Fo2 + 2Fc2)/3
4416 reflections(Δ/σ)max = 0.001
298 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.545232 (12)0.50480 (2)0.590326 (19)0.03852 (11)
O110.48081 (8)0.42174 (16)0.61458 (13)0.0536 (5)
O120.58816 (8)0.58560 (17)0.51974 (13)0.0589 (5)
O210.56818 (8)0.35925 (15)0.54865 (13)0.0549 (5)
O220.50102 (8)0.64874 (15)0.58505 (13)0.0581 (6)
N310.60407 (9)0.52228 (16)0.71558 (14)0.0391 (5)
N320.75201 (11)0.7049 (2)1.18938 (17)0.0710 (8)
C110.43281 (12)0.3906 (2)0.56234 (19)0.0420 (7)
C120.39861 (11)0.3173 (2)0.60095 (18)0.0399 (6)
C130.41930 (13)0.2875 (3)0.6908 (2)0.0584 (8)
H130.45390.31590.72820.070*
C140.38945 (18)0.2165 (3)0.7258 (3)0.0805 (11)
H140.40410.19730.78650.097*
C150.33831 (18)0.1736 (3)0.6724 (3)0.0803 (11)
H150.31840.12510.69630.096*
C160.31681 (14)0.2032 (3)0.5828 (3)0.0747 (10)
H160.28210.17450.54590.090*
C170.34645 (12)0.2755 (2)0.5472 (2)0.0563 (8)
H170.33120.29620.48690.068*
C210.53915 (12)0.3100 (2)0.47807 (19)0.0423 (6)
C220.55306 (11)0.1917 (2)0.46933 (19)0.0450 (7)
C230.51906 (15)0.1303 (3)0.3980 (3)0.0773 (11)
H230.48940.16360.35250.093*
C240.5289 (2)0.0196 (3)0.3940 (4)0.1091 (17)
H240.5051−0.02180.34640.131*
C250.5726 (2)−0.0295 (3)0.4583 (4)0.1087 (17)
H250.5786−0.10440.45510.130*
C260.6079 (2)0.0306 (3)0.5279 (3)0.0902 (13)
H260.6384−0.00340.57140.108*
C270.59863 (14)0.1418 (3)0.5344 (2)0.0628 (9)
H270.62280.18260.58200.075*
C310.65674 (12)0.4837 (2)0.73577 (19)0.0531 (8)
H310.66580.44370.69220.064*
C320.69861 (12)0.5004 (2)0.81848 (19)0.0568 (8)
H320.73510.47280.82920.068*
C330.68646 (11)0.5579 (2)0.88547 (17)0.0412 (7)
C340.63111 (11)0.5948 (2)0.86490 (17)0.0473 (7)
H340.62030.63230.90800.057*
C350.59211 (11)0.5760 (2)0.78060 (17)0.0456 (7)
H350.55520.60240.76810.055*
C360.73130 (12)0.5774 (2)0.97322 (18)0.0505 (7)
H360.76800.55400.97940.061*
C370.72419 (12)0.6248 (2)1.04352 (18)0.0509 (8)
H370.68720.64551.03780.061*
C380.76886 (13)0.6485 (2)1.13035 (18)0.0473 (7)
C390.82430 (14)0.6161 (3)1.1499 (2)0.0647 (9)
H390.83520.57701.10770.078*
C3100.86366 (15)0.6418 (3)1.2323 (2)0.0819 (12)
H3100.90140.61941.24670.098*
C3110.84732 (15)0.7006 (3)1.2933 (2)0.0639 (9)
H3110.87350.72011.34910.077*
C3120.79166 (16)0.7295 (3)1.2699 (2)0.0722 (10)
H3120.78020.76841.31160.087*
U11U22U33U12U13U23
Zn10.03822 (19)0.04063 (17)0.03006 (17)−0.00220 (15)0.00295 (12)−0.00148 (14)
O110.0470 (12)0.0593 (12)0.0528 (12)−0.0127 (10)0.0146 (10)−0.0025 (10)
O120.0622 (13)0.0699 (13)0.0446 (12)−0.0098 (11)0.0180 (10)0.0091 (11)
O210.0599 (13)0.0486 (11)0.0522 (13)0.0073 (10)0.0140 (10)−0.0082 (10)
O220.0580 (13)0.0474 (11)0.0584 (14)0.0102 (10)0.0063 (11)0.0015 (10)
N310.0405 (13)0.0400 (12)0.0331 (12)−0.0012 (10)0.0078 (10)−0.0030 (9)
N320.0614 (18)0.105 (2)0.0411 (15)−0.0057 (16)0.0108 (13)−0.0143 (15)
C110.0491 (18)0.0344 (14)0.0460 (17)0.0026 (13)0.0207 (14)−0.0019 (13)
C120.0426 (16)0.0373 (14)0.0431 (16)0.0024 (12)0.0190 (13)−0.0015 (12)
C130.062 (2)0.0643 (19)0.052 (2)−0.0050 (17)0.0227 (16)0.0023 (16)
C140.100 (3)0.086 (3)0.066 (2)0.002 (2)0.042 (2)0.022 (2)
C150.094 (3)0.057 (2)0.111 (3)−0.002 (2)0.062 (3)0.015 (2)
C160.056 (2)0.069 (2)0.102 (3)−0.0149 (18)0.031 (2)−0.007 (2)
C170.0473 (19)0.0579 (18)0.062 (2)−0.0040 (15)0.0168 (16)−0.0014 (16)
C210.0444 (17)0.0416 (14)0.0452 (17)0.0015 (13)0.0206 (14)0.0010 (13)
C220.0479 (17)0.0401 (14)0.0545 (18)0.0015 (13)0.0270 (14)−0.0016 (13)
C230.068 (2)0.059 (2)0.097 (3)−0.0027 (18)0.016 (2)−0.0217 (19)
C240.103 (4)0.063 (3)0.163 (5)−0.014 (2)0.046 (3)−0.050 (3)
C250.123 (4)0.042 (2)0.192 (6)0.007 (2)0.094 (4)−0.003 (3)
C260.103 (3)0.064 (2)0.121 (4)0.035 (2)0.061 (3)0.034 (2)
C270.071 (2)0.061 (2)0.062 (2)0.0168 (17)0.0303 (18)0.0140 (16)
C310.0490 (18)0.0643 (19)0.0413 (16)0.0072 (15)0.0093 (13)−0.0153 (14)
C320.0391 (16)0.074 (2)0.0488 (18)0.0100 (16)0.0043 (13)−0.0124 (17)
C330.0440 (17)0.0416 (15)0.0331 (15)−0.0033 (13)0.0067 (12)−0.0023 (12)
C340.0447 (17)0.0595 (17)0.0356 (15)0.0031 (14)0.0110 (13)−0.0087 (13)
C350.0360 (16)0.0582 (17)0.0374 (16)0.0044 (14)0.0056 (12)−0.0004 (14)
C360.0397 (17)0.0608 (18)0.0410 (17)0.0010 (14)0.0009 (13)−0.0077 (14)
C370.0445 (18)0.0638 (19)0.0371 (16)−0.0022 (14)0.0045 (13)−0.0036 (14)
C380.0547 (19)0.0500 (16)0.0324 (16)−0.0109 (14)0.0083 (14)−0.0012 (13)
C390.059 (2)0.077 (2)0.0444 (18)0.0088 (17)0.0002 (16)−0.0159 (16)
C3100.062 (2)0.099 (3)0.062 (2)0.005 (2)−0.0074 (19)−0.013 (2)
C3110.071 (2)0.069 (2)0.0367 (18)−0.0147 (19)−0.0020 (16)−0.0016 (16)
C3120.079 (3)0.096 (3)0.0382 (18)−0.009 (2)0.0162 (17)−0.0134 (18)
Zn1—N312.029 (2)C23—C241.376 (5)
Zn1—O122.039 (2)C23—H230.9300
Zn1—O212.0392 (19)C24—C251.349 (6)
Zn1—O112.0407 (19)C24—H240.9300
Zn1—O222.0580 (19)C25—C261.362 (6)
Zn1—Zn1i2.9711 (8)C25—H250.9300
O11—C111.258 (3)C26—C271.385 (4)
O12—C11i1.252 (3)C26—H260.9300
O21—C211.254 (3)C27—H270.9300
O22—C21i1.251 (3)C31—C321.379 (4)
N31—C311.327 (3)C31—H310.9300
N31—C351.331 (3)C32—C331.383 (4)
N32—C381.333 (4)C32—H320.9300
N32—C3121.350 (4)C33—C341.381 (3)
C11—O12i1.252 (3)C33—C361.471 (3)
C11—C121.498 (4)C34—C351.372 (3)
C12—C131.380 (4)C34—H340.9300
C12—C171.385 (4)C35—H350.9300
C13—C141.372 (4)C36—C371.313 (4)
C13—H130.9300C36—H360.9300
C14—C151.370 (5)C37—C381.468 (3)
C14—H140.9300C37—H370.9300
C15—C161.375 (5)C38—C391.368 (4)
C15—H150.9300C39—C3101.371 (4)
C16—C171.385 (4)C39—H390.9300
C16—H160.9300C310—C3111.366 (5)
C17—H170.9300C310—H3100.9300
C21—O22i1.251 (3)C311—C3121.355 (4)
C21—C221.500 (4)C311—H3110.9300
C22—C231.375 (4)C312—H3120.9300
C22—C271.385 (4)
N31—Zn1—O1298.00 (8)C24—C23—H23120.0
N31—Zn1—O21102.41 (8)C22—C23—H23120.0
O12—Zn1—O2189.34 (8)C25—C24—C23120.7 (4)
N31—Zn1—O11103.00 (8)C25—C24—H24119.7
O12—Zn1—O11158.97 (8)C23—C24—H24119.7
O21—Zn1—O1187.31 (8)C24—C25—C26120.1 (4)
N31—Zn1—O2298.62 (8)C24—C25—H25119.9
O12—Zn1—O2286.52 (9)C26—C25—H25119.9
O21—Zn1—O22158.93 (8)C25—C26—C27120.4 (4)
O11—Zn1—O2289.19 (8)C25—C26—H26119.8
N31—Zn1—Zn1i175.50 (6)C27—C26—H26119.8
O12—Zn1—Zn1i82.26 (6)C26—C27—C22119.4 (3)
O21—Zn1—Zn1i82.08 (6)C26—C27—H27120.3
O11—Zn1—Zn1i76.71 (6)C22—C27—H27120.3
O22—Zn1—Zn1i76.89 (5)N31—C31—C32122.9 (3)
C11—O11—Zn1131.38 (19)N31—C31—H31118.5
C11i—O12—Zn1124.19 (18)C32—C31—H31118.5
C21—O21—Zn1124.11 (17)C31—C32—C33120.2 (3)
C21i—O22—Zn1130.32 (18)C31—C32—H32119.9
C31—N31—C35116.8 (2)C33—C32—H32119.9
C31—N31—Zn1121.66 (18)C34—C33—C32116.5 (2)
C35—N31—Zn1121.47 (18)C34—C33—C36123.2 (2)
C38—N32—C312117.7 (3)C32—C33—C36120.3 (3)
O12i—C11—O11125.1 (3)C35—C34—C33119.7 (3)
O12i—C11—C12117.5 (2)C35—C34—H34120.1
O11—C11—C12117.4 (3)C33—C34—H34120.1
C13—C12—C17118.4 (3)N31—C35—C34123.8 (3)
C13—C12—C11120.5 (2)N31—C35—H35118.1
C17—C12—C11121.1 (3)C34—C35—H35118.1
C14—C13—C12120.8 (3)C37—C36—C33125.9 (3)
C14—C13—H13119.6C37—C36—H36117.1
C12—C13—H13119.6C33—C36—H36117.1
C15—C14—C13120.8 (3)C36—C37—C38126.5 (3)
C15—C14—H14119.6C36—C37—H37116.8
C13—C14—H14119.6C38—C37—H37116.8
C14—C15—C16119.1 (3)N32—C38—C39121.7 (3)
C14—C15—H15120.4N32—C38—C37115.6 (3)
C16—C15—H15120.4C39—C38—C37122.8 (3)
C15—C16—C17120.4 (3)C38—C39—C310119.3 (3)
C15—C16—H16119.8C38—C39—H39120.3
C17—C16—H16119.8C310—C39—H39120.3
C16—C17—C12120.4 (3)C311—C310—C39119.8 (3)
C16—C17—H17119.8C311—C310—H310120.1
C12—C17—H17119.8C39—C310—H310120.1
O22i—C21—O21125.2 (2)C312—C311—C310117.8 (3)
O22i—C21—C22117.4 (2)C312—C311—H311121.1
O21—C21—C22117.3 (2)C310—C311—H311121.1
C23—C22—C27119.2 (3)N32—C312—C311123.6 (3)
C23—C22—C21120.0 (3)N32—C312—H312118.2
C27—C22—C21120.8 (3)C311—C312—H312118.2
C24—C23—C22120.1 (4)
O12i—C11—C12—C13179.8 (3)C21—C22—C27—C26175.3 (3)
O11—C11—C12—C131.0 (4)C35—N31—C31—C32−2.1 (4)
O12i—C11—C12—C171.5 (4)N31—C31—C32—C331.1 (5)
O11—C11—C12—C17−177.2 (3)C31—C32—C33—C340.9 (4)
C17—C12—C13—C141.3 (5)C31—C32—C33—C36−178.9 (3)
C11—C12—C13—C14−177.0 (3)C32—C33—C34—C35−1.7 (4)
C12—C13—C14—C15−0.1 (5)C36—C33—C34—C35178.1 (3)
C13—C14—C15—C16−0.5 (6)C31—N31—C35—C341.3 (4)
C14—C15—C16—C17−0.1 (6)C33—C34—C35—N310.7 (4)
C15—C16—C17—C121.2 (5)C34—C33—C36—C374.5 (5)
C13—C12—C17—C16−1.8 (4)C32—C33—C36—C37−175.6 (3)
C11—C12—C17—C16176.5 (3)C33—C36—C37—C38−177.6 (3)
O22i—C21—C22—C23−5.7 (4)C312—N32—C38—C390.0 (5)
O21—C21—C22—C23173.3 (3)C312—N32—C38—C37−179.4 (3)
O22i—C21—C22—C27176.9 (3)C36—C37—C38—N32175.1 (3)
O21—C21—C22—C27−4.1 (4)C36—C37—C38—C39−4.4 (5)
C27—C22—C23—C242.9 (6)N32—C38—C39—C3100.2 (5)
C21—C22—C23—C24−174.5 (4)C37—C38—C39—C310179.6 (3)
C22—C23—C24—C25−1.6 (7)C38—C39—C310—C311−0.9 (5)
C23—C24—C25—C26−0.5 (8)C39—C310—C311—C3121.3 (5)
C24—C25—C26—C271.4 (7)C38—N32—C312—C3110.4 (5)
C25—C26—C27—C220.0 (6)C310—C311—C312—N32−1.1 (5)
C23—C22—C27—C26−2.1 (5)
  9 in total

1.  Tetra-mu-benzoato-kappa8O:O'-bis([1-[(3,4-dimethoxyphenyl)methyl]-6,7-dimethoxyisoquinoline-kappaN]zinc(II)): the first crystal structure with papaverine as a ligand.

Authors:  Vladimír Zelenák; Michal Sabo; Werner Massa; Juraj Cernák
Journal:  Acta Crystallogr C       Date:  2004-01-31       Impact factor: 1.172

Review 2.  Synthetic analogues relevant to the structure and function of zinc enzymes.

Authors:  Gerard Parkin
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

Review 3.  Synthetic models for non-heme carboxylate-bridged diiron metalloproteins: strategies and tactics.

Authors:  Edit Y Tshuva; Stephen J Lippard
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  catena-Poly[[bis-(2-hydr-oxy-2-phenyl-acetato-κO,O)zinc(II)]-μ-1,2-di-4-pyridylethane-κN:N'].

Authors:  Seung Man Yu; Dong Hoon Shin; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

6.  A neutral cubane with a Zn(4)O(4) core: tetra-benzoato-tetra-kis(μ(3)-hydroxydi-2-pyridylmethano-lato)tetra-zinc(II)-acetone-methanol (1/2/1).

Authors:  Dong Hoon Shin; Sim-Hee Han; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

7.  Tetra-μ-benzoato-bis-[(3-methyl-quinoline)copper(II)](Cu-Cu).

Authors:  Byeong Kwon Park; Kyung-Hwan Jang; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-09

8.  Tetra-μ-benzoato-bis-[(6-methyl-quino-line)-copper(II)].

Authors:  Seung Man Yu; Chi-Ho Park; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-07

9.  Tetra-μ-benzoato-bis-[(quinoxaline)copper(II)].

Authors:  Eun Yong Lee; Byeong Kwon Park; Cheal Kim; Sung-Jin Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-04
  9 in total
  3 in total

1.  Tetra-μ-benzoato-bis-{[4-(pyrrolidin-1-yl)pyridine]zinc(II)}.

Authors:  Seung Man Yu; Kyosang Koo; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12

2.  Bis(methanol-κO)bis-(quinoline-2-carboxyl-ato-κN,O)nickel(II).

Authors:  Juhye Kang; Jin Kie Yeo; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-12

3.  Bis(μ-2-carboxymethyl-2-hydroxy-butane-dioato)bis-[diaqua-manganese(II)]-1,2-bis-(pyridin-4-yl)ethane-water (1/1/2).

Authors:  In Hong Hwang; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-25
  3 in total

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