Literature DB >> 23125618

Bis(μ-3-carb-oxy-2-hy-droxy-propane-1,2-dicarboxyl-ato)bis(diaquazinc)-1,2-bis-(pyridin-4-yl)ethene-water (1/1/2).

In Hong Hwang1, Pan-Gi Kim, Cheal Kim, Youngmee Kim.   

Abstract

The asymmetric unit of the title compound, [Zn(2)(C(6)H(6)O(7))(2)(H(2)O)(4)]·C(12)H(10)N(2)·2H(2)O, comprises half of a centrosymmetric complex dimer, half of a 1,2-bis-(pyridin-4-yl)ethene mol-ecule, which lies across an inversion centre, and one lattice water mol-ecule. Carboxyl-ate groups of two dianionic citrate ligands bridge two Zn(II) ions to give the cyclic dimer, with each Zn(II) ion coordinated by four O atoms from the chelating citrate ligand (one hy-droxy and three carboxyl-ate, with one bridging) and two water O atoms, forming a distorted octa-hedral environment [Zn-O = 2.040 (3)-2.244 (3) Å]. In the crystal, O-H⋯O and O-H⋯N hydrogen bonds involving hy-droxy groups and both coordinating and lattice water mol-ecules link the dimers to give a three-dimensional framework structure.

Entities:  

Year:  2012        PMID: 23125618      PMCID: PMC3470174          DOI: 10.1107/S1600536812039761

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For inter­actions of metal ions with biologically active mol­ecules, see: Daniele et al. (2008 ▶); Parkin (2004 ▶); Tshuva & Lippard (2004 ▶); Stoumpos et al. (2009 ▶). For a manganese citrate complex, see: Hwang et al. (2012 ▶). For related complexes, see: Shin et al. (2009 ▶); Yu et al. (2009 ▶); Kim et al. (2011 ▶).

Experimental

Crystal data

[Zn2(C6H6O7)2(H2O)4]·C12H10N2·2H2O M = 801.31 Triclinic, a = 9.4360 (19) Å b = 9.4540 (19) Å c = 10.098 (2) Å α = 66.87 (3)° β = 70.19 (3)° γ = 75.91 (3)° V = 773.0 (3) Å3 Z = 1 Mo Kα radiation μ = 1.64 mm−1 T = 170 K 0.30 × 0.10 × 0.10 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.638, T max = 0.853 4216 measured reflections 2924 independent reflections 2382 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.140 S = 1.09 2924 reflections 239 parameters 7 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.77 e Å−3 Δρmin = −1.36 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL . Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812039761/zs2234sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039761/zs2234Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn2(C6H6O7)2(H2O)4]·C12H10N2·2H2OZ = 1
Mr = 801.31F(000) = 412
Triclinic, P1Dx = 1.721 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.4360 (19) ÅCell parameters from 11909 reflections
b = 9.4540 (19) Åθ = 2.7–27.6°
c = 10.098 (2) ŵ = 1.64 mm1
α = 66.87 (3)°T = 170 K
β = 70.19 (3)°Block, colourless
γ = 75.91 (3)°0.30 × 0.10 × 0.10 mm
V = 773.0 (3) Å3
Bruker SMART CCD diffractometer2924 independent reflections
Radiation source: fine-focus sealed tube2382 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
φ and ω scansθmax = 26.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −11→6
Tmin = 0.638, Tmax = 0.853k = −11→11
4216 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0822P)2] where P = (Fo2 + 2Fc2)/3
2924 reflections(Δ/σ)max < 0.001
239 parametersΔρmax = 0.77 e Å3
7 restraintsΔρmin = −1.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.68767 (6)0.59099 (5)0.60957 (5)0.02122 (19)
O10.5132 (3)0.4257 (3)0.7203 (3)0.0209 (6)
H1O0.466 (4)0.431 (5)0.651 (4)0.031*
O20.8003 (4)0.3981 (3)0.5435 (3)0.0260 (7)
O30.8228 (4)0.1376 (3)0.6320 (4)0.0341 (8)
O40.7490 (4)0.4656 (3)0.8125 (3)0.0282 (7)
O50.6894 (4)0.3353 (3)1.0577 (3)0.0310 (7)
H50.74020.39811.05580.046*
O60.4181 (4)0.3256 (3)0.5605 (3)0.0262 (7)
O70.4259 (5)0.0698 (3)0.6153 (4)0.0427 (9)
O80.5622 (4)0.7538 (3)0.7112 (3)0.0287 (7)
H8A0.542 (6)0.8518 (11)0.668 (5)0.034*
H8B0.480 (3)0.733 (5)0.782 (4)0.034*
O90.8800 (4)0.7008 (3)0.5133 (4)0.0333 (7)
H9A0.9753 (13)0.675 (6)0.507 (6)0.040*
H9B0.866 (6)0.8005 (4)0.482 (5)0.040*
C10.5996 (5)0.2711 (4)0.7563 (4)0.0192 (8)
C20.7522 (5)0.2671 (4)0.6340 (4)0.0222 (9)
C30.6235 (5)0.2336 (4)0.9105 (4)0.0249 (9)
H3A0.52420.21870.98670.030*
H3B0.69060.13400.93380.030*
C40.6919 (5)0.3555 (4)0.9255 (4)0.0238 (9)
C50.5058 (5)0.1490 (4)0.7724 (4)0.0235 (9)
H5A0.56940.04690.79110.028*
H5B0.41760.14170.86170.028*
C60.4474 (5)0.1808 (4)0.6386 (4)0.0228 (9)
N110.1862 (4)0.4370 (4)0.9552 (4)0.0282 (8)
C110.1610 (6)0.3080 (5)1.0802 (5)0.0300 (10)
H110.18260.30291.16740.036*
C120.1051 (5)0.1855 (5)1.0827 (5)0.0290 (10)
H120.08750.09671.17050.035*
C130.0741 (5)0.1939 (5)0.9522 (5)0.0271 (9)
C140.0990 (5)0.3284 (5)0.8255 (5)0.0280 (10)
H140.07710.33720.73720.034*
C150.1555 (5)0.4480 (5)0.8300 (5)0.0285 (10)
H150.17290.53880.74410.034*
C160.0212 (5)0.0643 (5)0.9421 (4)0.0297 (10)
H160.01680.07270.84670.036*
O1W0.8324 (4)0.0166 (4)0.4122 (4)0.0430 (9)
H1WA0.819 (6)0.057 (6)0.490 (4)0.052*
H1WB0.736 (3)0.034 (6)0.391 (6)0.052*
U11U22U33U12U13U23
Zn10.0271 (3)0.0171 (3)0.0208 (3)−0.00588 (19)−0.0053 (2)−0.00706 (19)
O10.0261 (16)0.0154 (12)0.0223 (14)−0.0028 (12)−0.0067 (13)−0.0072 (11)
O20.0314 (17)0.0210 (14)0.0240 (14)−0.0041 (13)−0.0066 (13)−0.0064 (12)
O30.0333 (19)0.0196 (14)0.0436 (18)0.0001 (13)−0.0025 (15)−0.0135 (13)
O40.0400 (19)0.0243 (15)0.0248 (15)−0.0135 (14)−0.0144 (14)−0.0028 (12)
O50.047 (2)0.0309 (15)0.0236 (14)−0.0232 (15)−0.0075 (15)−0.0089 (13)
O60.0399 (19)0.0193 (13)0.0234 (14)−0.0032 (13)−0.0146 (14)−0.0066 (11)
O70.076 (3)0.0190 (15)0.0502 (19)−0.0098 (16)−0.037 (2)−0.0102 (14)
O80.040 (2)0.0188 (14)0.0242 (15)−0.0045 (14)−0.0040 (14)−0.0081 (12)
O90.0251 (17)0.0230 (15)0.0490 (19)−0.0057 (14)−0.0071 (16)−0.0103 (14)
C10.025 (2)0.0144 (17)0.0204 (19)−0.0048 (16)−0.0068 (17)−0.0062 (15)
C20.025 (2)0.0218 (19)0.023 (2)−0.0038 (18)−0.0084 (18)−0.0098 (16)
C30.032 (3)0.0210 (19)0.022 (2)−0.0100 (18)−0.0042 (19)−0.0062 (16)
C40.024 (2)0.024 (2)0.025 (2)−0.0020 (18)−0.0075 (18)−0.0095 (17)
C50.028 (2)0.0186 (18)0.024 (2)−0.0050 (17)−0.0079 (18)−0.0052 (16)
C60.027 (2)0.0221 (19)0.0231 (19)−0.0049 (17)−0.0074 (18)−0.0098 (16)
N110.031 (2)0.0290 (18)0.0293 (18)−0.0035 (17)−0.0072 (17)−0.0162 (16)
C110.039 (3)0.029 (2)0.028 (2)−0.006 (2)−0.009 (2)−0.0143 (18)
C120.036 (3)0.025 (2)0.029 (2)−0.0079 (19)−0.010 (2)−0.0094 (18)
C130.026 (2)0.026 (2)0.031 (2)−0.0023 (19)−0.0034 (19)−0.0156 (18)
C140.031 (3)0.031 (2)0.028 (2)−0.0002 (19)−0.011 (2)−0.0169 (18)
C150.028 (3)0.030 (2)0.028 (2)−0.0052 (19)−0.0042 (19)−0.0118 (18)
C160.037 (3)0.029 (2)0.027 (2)0.000 (2)−0.009 (2)−0.0172 (18)
O1W0.042 (2)0.0371 (18)0.057 (2)−0.0027 (17)−0.0159 (19)−0.0224 (17)
Zn1—O92.060 (3)C1—C21.551 (6)
Zn1—O6i2.069 (3)C3—C41.527 (5)
Zn1—O82.086 (3)C3—H3A0.9900
Zn1—O22.105 (3)C3—H3B0.9900
Zn1—O42.122 (3)C5—C61.525 (5)
Zn1—O12.244 (3)C5—H5A0.9900
O1—C11.461 (4)C5—H5B0.9900
O1—H1O0.930 (2)N11—C151.351 (5)
O2—C21.296 (5)N11—C111.366 (5)
O3—C21.248 (5)C11—C121.374 (6)
O4—C41.264 (5)C11—H110.9500
O5—C41.265 (5)C12—C131.412 (6)
O5—H50.8400C12—H120.9500
O6—C61.299 (5)C13—C141.404 (6)
O6—Zn1i2.069 (3)C13—C161.481 (6)
O7—C61.236 (5)C14—C151.384 (6)
O8—H8A0.860 (2)C14—H140.9500
O8—H8B0.860 (2)C15—H150.9500
O9—H9A0.860 (2)C16—C16ii1.345 (8)
O9—H9B0.860 (2)C16—H160.9500
C1—C31.539 (5)O1W—H1WA0.960 (2)
C1—C51.547 (5)O1W—H1WB0.960 (2)
O9—Zn1—O6i102.94 (13)C4—C3—H3A108.4
O9—Zn1—O894.22 (13)C1—C3—H3A108.4
O6i—Zn1—O894.62 (12)C4—C3—H3B108.4
O9—Zn1—O292.48 (13)C1—C3—H3B108.4
O6i—Zn1—O290.97 (11)H3A—C3—H3B107.4
O8—Zn1—O2170.11 (11)O4—C4—O5123.4 (4)
O9—Zn1—O492.53 (13)O4—C4—C3121.6 (3)
O6i—Zn1—O4164.39 (12)O5—C4—C3114.9 (3)
O8—Zn1—O486.23 (12)C6—C5—C1115.6 (3)
O2—Zn1—O486.21 (11)C6—C5—H5A108.4
O9—Zn1—O1167.91 (11)C1—C5—H5A108.4
O6i—Zn1—O183.38 (11)C6—C5—H5B108.4
O8—Zn1—O195.54 (12)C1—C5—H5B108.4
O2—Zn1—O176.98 (11)H5A—C5—H5B107.5
O4—Zn1—O181.02 (11)O7—C6—O6124.9 (4)
C1—O1—Zn1105.3 (2)O7—C6—C5118.7 (3)
C1—O1—H1O106 (3)O6—C6—C5116.3 (3)
Zn1—O1—H1O109 (3)C15—N11—C11120.6 (4)
C2—O2—Zn1114.9 (2)N11—C11—C12121.5 (4)
C4—O4—Zn1130.7 (3)N11—C11—H11119.3
C4—O5—H5109.5C12—C11—H11119.3
C6—O6—Zn1i126.1 (3)C11—C12—C13118.8 (4)
Zn1—O8—H8A127 (3)C11—C12—H12120.6
Zn1—O8—H8B121 (3)C13—C12—H12120.6
H8A—O8—H8B101 (5)C14—C13—C12118.9 (4)
Zn1—O9—H9A137 (3)C14—C13—C16118.6 (4)
Zn1—O9—H9B117 (4)C12—C13—C16122.5 (4)
H9A—O9—H9B106 (5)C15—C14—C13119.6 (4)
O1—C1—C3106.3 (3)C15—C14—H14120.2
O1—C1—C5110.4 (3)C13—C14—H14120.2
C3—C1—C5107.3 (3)N11—C15—C14120.7 (4)
O1—C1—C2110.7 (3)N11—C15—H15119.7
C3—C1—C2112.1 (3)C14—C15—H15119.7
C5—C1—C2110.0 (3)C16ii—C16—C13124.9 (5)
O3—C2—O2124.3 (4)C16ii—C16—H16117.5
O3—C2—C1117.7 (3)C13—C16—H16117.5
O2—C2—C1118.0 (3)H1WA—O1W—H1WB108 (5)
C4—C3—C1115.6 (3)
O9—Zn1—O1—C12.9 (6)O1—C1—C3—C4−52.5 (5)
O6i—Zn1—O1—C1125.2 (2)C5—C1—C3—C4−170.6 (3)
O8—Zn1—O1—C1−140.8 (2)C2—C1—C3—C468.5 (4)
O2—Zn1—O1—C132.6 (2)Zn1—O4—C4—O5−147.6 (3)
O4—Zn1—O1—C1−55.5 (2)Zn1—O4—C4—C333.9 (6)
O9—Zn1—O2—C2148.1 (3)C1—C3—C4—O4−11.8 (6)
O6i—Zn1—O2—C2−108.9 (3)C1—C3—C4—O5169.6 (4)
O4—Zn1—O2—C255.8 (3)O1—C1—C5—C655.0 (5)
O1—Zn1—O2—C2−25.9 (3)C3—C1—C5—C6170.4 (4)
O9—Zn1—O4—C4−170.7 (4)C2—C1—C5—C6−67.4 (4)
O6i—Zn1—O4—C41.6 (7)Zn1i—O6—C6—O75.5 (7)
O8—Zn1—O4—C495.3 (4)Zn1i—O6—C6—C5−171.6 (3)
O2—Zn1—O4—C4−78.3 (4)C1—C5—C6—O7152.2 (4)
O1—Zn1—O4—C4−0.9 (3)C1—C5—C6—O6−30.6 (5)
Zn1—O1—C1—C386.9 (3)C15—N11—C11—C120.5 (7)
Zn1—O1—C1—C5−157.0 (2)N11—C11—C12—C130.4 (7)
Zn1—O1—C1—C2−35.0 (3)C11—C12—C13—C14−1.2 (7)
Zn1—O2—C2—O3−164.3 (3)C11—C12—C13—C16176.8 (4)
Zn1—O2—C2—C113.4 (4)C12—C13—C14—C151.2 (7)
O1—C1—C2—O3−165.1 (3)C16—C13—C14—C15−176.9 (4)
C3—C1—C2—O376.4 (4)C11—N11—C15—C14−0.5 (7)
C5—C1—C2—O3−42.9 (5)C13—C14—C15—N11−0.4 (7)
O1—C1—C2—O217.0 (5)C14—C13—C16—C16ii−173.2 (6)
C3—C1—C2—O2−101.5 (4)C12—C13—C16—C16ii8.8 (9)
C5—C1—C2—O2139.2 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1O···O60.93 (1)1.80 (2)2.626 (4)146 (4)
O5—H5···N11iii0.841.812.633 (5)168
O8—H8B···O5iii0.86 (1)1.88 (1)2.733 (5)173 (5)
O8—H8A···O7i0.86 (1)2.58 (4)3.031 (4)114 (4)
O8—H8A···O7iv0.86 (1)2.04 (2)2.866 (4)161 (5)
O9—H9B···O1Wiv0.86 (1)1.87 (1)2.725 (5)179 (5)
O9—H9A···O3v0.86 (1)2.57 (4)3.145 (5)125 (4)
O9—H9A···O2v0.86 (1)2.01 (1)2.860 (5)168 (5)
O1W—H1WA···O30.96 (1)1.88 (1)2.838 (5)172 (5)
O1W—H1WB···O7vi0.96 (1)2.04 (3)2.880 (5)145 (4)
C14—H14···O9i0.952.583.474 (5)158
C12—H12···O3vii0.952.523.390 (5)152
C11—H11···O4iii0.952.523.132 (5)122
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1O⋯O60.93 (1)1.80 (2)2.626 (4)146 (4)
O5—H5⋯N11i 0.841.812.633 (5)168
O8—H8B⋯O5i 0.86 (1)1.88 (1)2.733 (5)173 (5)
O8—H8A⋯O7ii 0.86 (1)2.04 (2)2.866 (4)161 (5)
O9—H9B⋯O1W ii 0.86 (1)1.87 (1)2.725 (5)179 (5)
O9—H9A⋯O3iii 0.86 (1)2.57 (4)3.145 (5)125 (4)
O9—H9A⋯O2iii 0.86 (1)2.01 (1)2.860 (5)168 (5)
O1W—H1WA⋯O30.96 (1)1.88 (1)2.838 (5)172 (5)
O1W—H1WB⋯O7iv 0.96 (1)2.04 (3)2.880 (5)145 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  8 in total

Review 1.  Synthetic analogues relevant to the structure and function of zinc enzymes.

Authors:  Gerard Parkin
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

Review 2.  Synthetic models for non-heme carboxylate-bridged diiron metalloproteins: strategies and tactics.

Authors:  Edit Y Tshuva; Stephen J Lippard
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  catena-Poly[[bis-(2-hydr-oxy-2-phenyl-acetato-κO,O)zinc(II)]-μ-1,2-di-4-pyridylethane-κN:N'].

Authors:  Seung Man Yu; Dong Hoon Shin; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

5.  A neutral cubane with a Zn(4)O(4) core: tetra-benzoato-tetra-kis(μ(3)-hydroxydi-2-pyridylmethano-lato)tetra-zinc(II)-acetone-methanol (1/2/1).

Authors:  Dong Hoon Shin; Sim-Hee Han; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

6.  A MnII4 cubane and a novel MnII10MnIII4 cluster from the use of di-2-pyridyl ketone in manganese acetate chemistry.

Authors:  Constantinos C Stoumpos; Ian A Gass; Constantinos J Milios; Nikolia Lalioti; Aris Terzis; Guillem Aromí; Simon J Teat; Euan K Brechin; Spyros P Perlepes
Journal:  Dalton Trans       Date:  2008-11-06       Impact factor: 4.390

7.  Poly[[bis-[μ-1,2-bis-(4-pyrid-yl)ethene]bis-(trichloro-acetato)-cadmium(II)] monohydrate].

Authors:  Jin Hoon Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-04

8.  Bis(μ-2-carboxymethyl-2-hydroxy-butane-dioato)bis-[diaqua-manganese(II)]-1,2-bis-(pyridin-4-yl)ethane-water (1/1/2).

Authors:  In Hong Hwang; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-25
  8 in total
  1 in total

1.  Bis(μ-2-carb-oxy-methyl-2-hy-droxy-butane-dioato)bis-[diaqua-manganese(II)]-1,2-bis-(pyridin-4-yl)ethene-water (1/1/2).

Authors:  In Hong Hwang; Pan-Gi Kim; Jae-Cheon Lee; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-24
  1 in total

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