Literature DB >> 22219761

Bis(methanol-κO)bis-(quinoline-2-carboxyl-ato-κN,O)nickel(II).

Juhye Kang, Jin Kie Yeo, Pan-Gi Kim, Cheal Kim, Youngmee Kim.   

Abstract

In the title complex, [Ni(C(10)H(6)NO(2))(2)(CH(3)OH)(2)], the Ni(II) ion lies on an inversion center and is coordinated by two quinoline-2-carboxyl-ate ligands in the equatorial sites and two axial methanol ligands, forming a distorted octa-hedral environment. In the crystal, mol-ecules are linked via O-H⋯O hydrogen bonds into a two-dimensional network parallel to (10[Formula: see text]).

Entities:  

Year:  2011        PMID: 22219761      PMCID: PMC3246941          DOI: 10.1107/S1600536811041134

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For inter­actions of metal ions with amino acids, see: Daniele et al. (2008 ▶); Parkin (2004 ▶); Tshuva & Lippard (2004 ▶); Stoumpos et al. (2009 ▶). For related structures, see: Lee et al. (2008 ▶); Park et al. (2008 ▶); Shin et al. (2009 ▶); Song et al. (2009 ▶); Yu et al. (2008 ▶, 2009 ▶, 2010 ▶); Kim et al. (2011 ▶).

Experimental

Crystal data

[Ni(C10H6NO2)2(CH4O)2] M = 467.11 Monoclinic, a = 10.411 (2) Å b = 7.3910 (15) Å c = 13.556 (3) Å β = 108.57 (3)° V = 988.8 (3) Å3 Z = 2 Mo Kα radiation μ = 1.03 mm−1 T = 293 K 0.40 × 0.10 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.884, T max = 0.903 5292 measured reflections 1929 independent reflections 1666 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.076 S = 1.07 1929 reflections 146 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.31 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811041134/lh5343sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811041134/lh5343Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C10H6NO2)2(CH4O)2]F(000) = 484
Mr = 467.11Dx = 1.569 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3640 reflections
a = 10.411 (2) Åθ = 2.6–28.1°
b = 7.3910 (15) ŵ = 1.03 mm1
c = 13.556 (3) ÅT = 293 K
β = 108.57 (3)°Rod, colorless
V = 988.8 (3) Å30.40 × 0.10 × 0.10 mm
Z = 2
Bruker SMART CCD area-detector diffractometer1929 independent reflections
Radiation source: fine-focus sealed tube1666 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scansθmax = 26.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −12→12
Tmin = 0.884, Tmax = 0.903k = −9→9
5292 measured reflectionsl = −9→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.076H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0451P)2 + 0.2296P] where P = (Fo2 + 2Fc2)/3
1929 reflections(Δ/σ)max = 0.001
146 parametersΔρmax = 0.22 e Å3
1 restraintΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni11.00000.00000.50000.02463 (12)
N10.79816 (13)0.10618 (19)0.48009 (11)0.0270 (3)
O10.94209 (12)0.07175 (19)0.35013 (9)0.0314 (3)
O20.78467 (15)0.2090 (2)0.22280 (11)0.0530 (4)
O30.91781 (13)−0.25715 (18)0.45429 (10)0.0362 (3)
H3O0.8599 (16)−0.259 (3)0.3928 (7)0.043*
C10.72490 (17)0.1223 (2)0.54860 (13)0.0296 (4)
C20.77500 (19)0.0457 (3)0.64897 (15)0.0360 (4)
H20.8589−0.01160.66980.043*
C30.7003 (2)0.0554 (3)0.71576 (16)0.0427 (5)
H30.73310.00200.78110.051*
C40.5748 (2)0.1451 (3)0.68685 (17)0.0453 (5)
H40.52570.15140.73330.054*
C50.5250 (2)0.2221 (3)0.59184 (17)0.0429 (5)
H50.44250.28260.57400.051*
C60.59717 (18)0.2118 (2)0.51872 (15)0.0347 (4)
C70.54761 (19)0.2841 (3)0.41796 (17)0.0414 (5)
H70.46530.34550.39710.050*
C80.61990 (19)0.2645 (3)0.35068 (15)0.0385 (4)
H80.58710.31010.28330.046*
C90.74535 (17)0.1737 (2)0.38513 (14)0.0300 (4)
C100.82890 (17)0.1504 (3)0.31228 (14)0.0315 (4)
C110.8677 (2)−0.3714 (3)0.51879 (17)0.0481 (5)
H11A0.9424−0.41960.57400.072*
H11B0.8167−0.46900.47790.072*
H11C0.8102−0.30250.54780.072*
U11U22U33U12U13U23
Ni10.02223 (18)0.03058 (19)0.01837 (18)0.00163 (12)0.00265 (12)−0.00029 (12)
N10.0236 (7)0.0301 (8)0.0250 (7)0.0008 (6)0.0045 (6)−0.0006 (6)
O10.0268 (6)0.0448 (7)0.0206 (6)0.0047 (6)0.0045 (5)0.0017 (6)
O20.0390 (7)0.0871 (12)0.0295 (7)0.0141 (8)0.0060 (6)0.0189 (8)
O30.0352 (7)0.0369 (7)0.0291 (7)−0.0050 (6)0.0000 (5)−0.0025 (6)
C10.0267 (8)0.0299 (9)0.0320 (10)−0.0015 (7)0.0089 (7)−0.0048 (7)
C20.0307 (9)0.0458 (11)0.0317 (10)0.0052 (8)0.0105 (8)−0.0009 (8)
C30.0430 (11)0.0562 (12)0.0317 (10)0.0024 (10)0.0158 (9)−0.0019 (9)
C40.0414 (11)0.0561 (13)0.0459 (12)−0.0013 (10)0.0246 (10)−0.0108 (10)
C50.0323 (10)0.0456 (12)0.0539 (13)0.0064 (9)0.0182 (9)−0.0057 (10)
C60.0292 (9)0.0328 (10)0.0419 (11)0.0019 (8)0.0110 (8)−0.0035 (8)
C70.0288 (9)0.0418 (11)0.0511 (12)0.0112 (8)0.0094 (9)0.0063 (9)
C80.0304 (9)0.0429 (11)0.0366 (10)0.0061 (8)0.0027 (8)0.0114 (9)
C90.0249 (8)0.0317 (9)0.0302 (9)−0.0013 (7)0.0043 (7)0.0015 (8)
C100.0275 (8)0.0384 (10)0.0241 (9)−0.0002 (8)0.0017 (7)0.0025 (8)
C110.0544 (13)0.0428 (12)0.0447 (12)−0.0066 (10)0.0124 (10)0.0000 (10)
Ni1—O1i1.9979 (12)C3—C41.405 (3)
Ni1—O11.9980 (12)C3—H30.9300
Ni1—O3i2.0954 (13)C4—C51.351 (3)
Ni1—O32.0954 (13)C4—H40.9300
Ni1—N12.1779 (14)C5—C61.423 (3)
Ni1—N1i2.1779 (14)C5—H50.9300
N1—C91.326 (2)C6—C71.403 (3)
N1—C11.382 (2)C7—C81.363 (3)
O1—C101.267 (2)C7—H70.9300
O2—C101.231 (2)C8—C91.409 (3)
O3—C111.429 (3)C8—H80.9300
O3—H3O0.859 (2)C9—C101.519 (3)
C1—C21.411 (3)C11—H11A0.9600
C1—C61.424 (2)C11—H11B0.9600
C2—C31.371 (3)C11—H11C0.9600
C2—H20.9300
O1i—Ni1—O1180.0C2—C3—H3119.5
O1i—Ni1—O3i88.71 (6)C4—C3—H3119.5
O1—Ni1—O3i91.29 (6)C5—C4—C3120.31 (19)
O1i—Ni1—O391.29 (6)C5—C4—H4119.8
O1—Ni1—O388.71 (6)C3—C4—H4119.8
O3i—Ni1—O3180.00 (7)C4—C5—C6120.93 (18)
O1i—Ni1—N1100.86 (6)C4—C5—H5119.5
O1—Ni1—N179.14 (6)C6—C5—H5119.5
O3i—Ni1—N189.82 (5)C7—C6—C5123.07 (17)
O3—Ni1—N190.18 (5)C7—C6—C1118.33 (17)
O1i—Ni1—N1i79.14 (6)C5—C6—C1118.60 (17)
O1—Ni1—N1i100.86 (6)C8—C7—C6120.06 (17)
O3i—Ni1—N1i90.18 (5)C8—C7—H7120.0
O3—Ni1—N1i89.82 (5)C6—C7—H7120.0
N1—Ni1—N1i180.0C7—C8—C9118.69 (18)
C9—N1—C1118.24 (14)C7—C8—H8120.7
C9—N1—Ni1109.96 (11)C9—C8—H8120.7
C1—N1—Ni1131.69 (11)N1—C9—C8123.71 (17)
C10—O1—Ni1118.31 (11)N1—C9—C10116.25 (15)
C11—O3—Ni1123.34 (12)C8—C9—C10120.04 (16)
C11—O3—H3O107.6 (15)O2—C10—O1124.64 (18)
Ni1—O3—H3O113.5 (15)O2—C10—C9119.26 (16)
N1—C1—C2119.98 (15)O1—C10—C9116.09 (15)
N1—C1—C6120.95 (16)O3—C11—H11A109.5
C2—C1—C6119.06 (17)O3—C11—H11B109.5
C3—C2—C1120.16 (18)H11A—C11—H11B109.5
C3—C2—H2119.9O3—C11—H11C109.5
C1—C2—H2119.9H11A—C11—H11C109.5
C2—C3—C4120.9 (2)H11B—C11—H11C109.5
O1i—Ni1—N1—C9175.65 (12)C2—C3—C4—C50.6 (3)
O1—Ni1—N1—C9−4.35 (12)C3—C4—C5—C61.0 (3)
O3i—Ni1—N1—C987.00 (12)C4—C5—C6—C7177.7 (2)
O3—Ni1—N1—C9−93.00 (12)C4—C5—C6—C1−1.5 (3)
O1i—Ni1—N1—C1−0.27 (16)N1—C1—C6—C7−0.3 (3)
O1—Ni1—N1—C1179.73 (16)C2—C1—C6—C7−178.75 (18)
O3i—Ni1—N1—C1−88.92 (15)N1—C1—C6—C5179.02 (16)
O3—Ni1—N1—C191.08 (15)C2—C1—C6—C50.5 (3)
O3i—Ni1—O1—C10−85.58 (14)C5—C6—C7—C8−177.88 (19)
O3—Ni1—O1—C1094.42 (14)C1—C6—C7—C81.4 (3)
N1—Ni1—O1—C103.98 (13)C6—C7—C8—C9−1.1 (3)
N1i—Ni1—O1—C10−176.02 (13)C1—N1—C9—C81.4 (3)
O1i—Ni1—O3—C1127.49 (15)Ni1—N1—C9—C8−175.15 (15)
O1—Ni1—O3—C11−152.51 (15)C1—N1—C9—C10−179.23 (14)
N1—Ni1—O3—C11−73.38 (15)Ni1—N1—C9—C104.23 (18)
N1i—Ni1—O3—C11106.62 (15)C7—C8—C9—N1−0.3 (3)
C9—N1—C1—C2177.39 (17)C7—C8—C9—C10−179.64 (18)
Ni1—N1—C1—C2−7.0 (2)Ni1—O1—C10—O2176.36 (16)
C9—N1—C1—C6−1.1 (2)Ni1—O1—C10—C9−2.9 (2)
Ni1—N1—C1—C6174.56 (12)N1—C9—C10—O2179.42 (18)
N1—C1—C2—C3−177.54 (18)C8—C9—C10—O2−1.2 (3)
C6—C1—C2—C31.0 (3)N1—C9—C10—O1−1.3 (2)
C1—C2—C3—C4−1.5 (3)C8—C9—C10—O1178.12 (17)
D—H···AD—HH···AD···AD—H···A
O3—H3O···O2ii0.86 (1)1.81 (1)2.655 (2)167.(2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3O⋯O2i0.86 (1)1.81 (1)2.655 (2)167 (2)

Symmetry code: (i) .

  12 in total

Review 1.  Synthetic analogues relevant to the structure and function of zinc enzymes.

Authors:  Gerard Parkin
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

Review 2.  Synthetic models for non-heme carboxylate-bridged diiron metalloproteins: strategies and tactics.

Authors:  Edit Y Tshuva; Stephen J Lippard
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

3.  catena-Poly[[bis-(2-hydr-oxy-2-phenyl-acetato-κO,O)zinc(II)]-μ-1,2-di-4-pyridylethane-κN:N'].

Authors:  Seung Man Yu; Dong Hoon Shin; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

4.  A neutral cubane with a Zn(4)O(4) core: tetra-benzoato-tetra-kis(μ(3)-hydroxydi-2-pyridylmethano-lato)tetra-zinc(II)-acetone-methanol (1/2/1).

Authors:  Dong Hoon Shin; Sim-Hee Han; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

5.  Tetra-μ-benzoato-bis-{[trans-1-(2-pyrid-yl)-2-(4-pyrid-yl)ethyl-ene]zinc(II)}.

Authors:  Young Joo Song; Soo-Won Lee; Kyung Hwan Jang; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-04

6.  Tetra-μ-benzoato-bis-{[4-(pyrrolidin-1-yl)pyridine]zinc(II)}.

Authors:  Seung Man Yu; Kyosang Koo; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12

7.  A MnII4 cubane and a novel MnII10MnIII4 cluster from the use of di-2-pyridyl ketone in manganese acetate chemistry.

Authors:  Constantinos C Stoumpos; Ian A Gass; Constantinos J Milios; Nikolia Lalioti; Aris Terzis; Guillem Aromí; Simon J Teat; Euan K Brechin; Spyros P Perlepes
Journal:  Dalton Trans       Date:  2008-11-06       Impact factor: 4.390

8.  Tetra-μ-benzoato-bis-[(6-methyl-quino-line)-copper(II)].

Authors:  Seung Man Yu; Chi-Ho Park; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-07

9.  Tetra-μ-benzoato-bis-[(quinoxaline)copper(II)].

Authors:  Eun Yong Lee; Byeong Kwon Park; Cheal Kim; Sung-Jin Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-04

10.  Poly[[bis-[μ-1,2-bis-(4-pyrid-yl)ethene]bis-(trichloro-acetato)-cadmium(II)] monohydrate].

Authors:  Jin Hoon Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-04
View more
  1 in total

1.  catena-Poly[[bis-(2,4-dichloro-benzoato)bis-(methanol-κO)cobalt(II)]-μ-4,4'-bipyridine-κN:N'].

Authors:  Min Young Hyun; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-09
  1 in total

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