Literature DB >> 21587425

Bis(di-2-pyridyl-methane-diol-κN,O,N')nickel(II) dibenzoate.

Jin Hoon Kim, Du-Hyun Kim, Pan-Gi Kim, Cheal Kim, Youngmee Kim.   

Abstract

The title compound, [Ni(C(11)H(10)N(2)O(2))(2)](C(7)H(5)O(2))(2), consists of an Ni(II) ion coordinated by two tridentate chelating (2-py)(2)C(OH)(2) ligands (py is pyrid-yl) and two benzoate anions. The Ni(II) ion is located on a twofold rotation axis, and its geometry is distorted octa-hedral. The gem-diol ligand (2-py)(2)C(OH)(2) adopts an η(1):η(1):η(1) coordination mode. There are O-H⋯O hydrogen bonds between the gem-diol ligands and benzoate anions.

Entities:  

Year:  2010        PMID: 21587425      PMCID: PMC2983329          DOI: 10.1107/S160053681003669X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For examples of inter­actions between transition metal ions and biologically active mol­ecules, see: Efthymiou et al. (2006 ▶); Daniele et al. (2008 ▶); Parkin (2004 ▶); Tshuva & Lippard (2004 ▶). For related structures of Cu(II) and Zn(II) benzoates, see: Lee et al. (2008 ▶); Yu et al. (2008 ▶); Park et al. (2008 ▶); Shin et al. (2009 ▶); Yu et al. (2010 ▶). For the di-2-pyridyl­ketone [(py)2CO] ligand, see: Papaefstathiou & Perlepes (2002 ▶); Stoumpos et al. (2009 ▶). For related structures, see: Wang et al. (1986 ▶); Li et al. (2005 ▶); Yu et al. (2009a ▶,b ▶).

Experimental

Crystal data

[Ni(C11H10N2O2)2](C7H5O2)2 M = 705.35 Monoclinic, a = 24.065 (8) Å b = 8.681 (3) Å c = 17.718 (6) Å β = 123.526 (5)° V = 3085.7 (17) Å3 Z = 4 Mo Kα radiation μ = 0.69 mm−1 T = 173 K 0.08 × 0.05 × 0.05 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.959, T max = 0.966 8329 measured reflections 3031 independent reflections 1818 reflections with I > 2σ(I) R int = 0.095

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.109 S = 1.01 3031 reflections 222 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.34 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681003669X/dn2601sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681003669X/dn2601Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C11H10N2O2)2](C7H5O2)2F(000) = 1464
Mr = 705.35Dx = 1.518 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 526 reflections
a = 24.065 (8) Åθ = 2.6–18.8°
b = 8.681 (3) ŵ = 0.69 mm1
c = 17.718 (6) ÅT = 173 K
β = 123.526 (5)°Block, colourless
V = 3085.7 (17) Å30.08 × 0.05 × 0.05 mm
Z = 4
Bruker SMART CCD diffractometer3031 independent reflections
Radiation source: fine-focus sealed tube1818 reflections with I > 2σ(I)
graphiteRint = 0.095
φ and ω scansθmax = 26.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −29→28
Tmin = 0.959, Tmax = 0.966k = −10→9
8329 measured reflectionsl = −20→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.P)2] where P = (Fo2 + 2Fc2)/3
3031 reflections(Δ/σ)max < 0.001
222 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.50000.54475 (8)0.75000.0218 (2)
O10.42807 (11)0.6969 (3)0.74041 (15)0.0272 (6)
H1O0.42940.71800.78770.041*
O20.31141 (11)0.6882 (3)0.65747 (15)0.0311 (7)
H2O0.30950.69160.70340.047*
N10.43794 (14)0.3935 (4)0.75897 (18)0.0240 (8)
N20.43061 (13)0.5602 (3)0.61309 (17)0.0224 (7)
C10.45080 (19)0.2545 (5)0.7972 (2)0.0295 (10)
H10.49450.21350.82500.035*
C20.4030 (2)0.1682 (5)0.7979 (2)0.0340 (10)
H20.41360.06960.82570.041*
C30.33914 (19)0.2273 (5)0.7573 (2)0.0336 (10)
H30.30530.16960.75640.040*
C40.32564 (18)0.3714 (5)0.7182 (2)0.0282 (10)
H40.28230.41470.69040.034*
C50.37576 (16)0.4519 (5)0.7200 (2)0.0231 (9)
C60.36850 (16)0.6119 (4)0.6785 (2)0.0244 (9)
C70.36976 (17)0.5939 (4)0.5939 (2)0.0215 (9)
C80.31530 (18)0.6127 (4)0.5068 (2)0.0278 (9)
H80.27250.63450.49490.033*
C90.32512 (19)0.5986 (4)0.4372 (2)0.0306 (10)
H90.28860.61170.37630.037*
C100.38729 (18)0.5658 (5)0.4555 (2)0.0326 (10)
H100.39440.55660.40810.039*
C110.43897 (17)0.5467 (5)0.5446 (2)0.0286 (9)
H110.48210.52300.55800.034*
O210.42695 (12)0.7889 (3)0.87550 (16)0.0364 (7)
O220.31909 (12)0.7353 (3)0.80877 (16)0.0409 (8)
C210.3730 (2)0.7889 (5)0.8723 (3)0.0306 (10)
C220.37566 (18)0.8581 (5)0.9521 (2)0.0272 (9)
C230.33218 (19)0.8072 (5)0.9755 (3)0.0329 (10)
H230.30110.72770.94110.039*
C240.3337 (2)0.8705 (5)1.0476 (3)0.0382 (11)
H240.30410.83391.06320.046*
C250.3776 (2)0.9862 (5)1.0971 (3)0.0396 (11)
H250.37761.03121.14590.047*
C260.42184 (18)1.0377 (5)1.0767 (3)0.0356 (10)
H260.45271.11701.11190.043*
C270.42110 (18)0.9730 (5)1.0042 (3)0.0342 (10)
H270.45191.00770.99030.041*
U11U22U33U12U13U23
Ni10.0214 (4)0.0260 (4)0.0186 (4)0.0000.0115 (3)0.000
O10.0272 (14)0.0340 (17)0.0230 (13)−0.0008 (13)0.0155 (12)−0.0029 (13)
O20.0259 (15)0.0429 (19)0.0280 (14)0.0089 (13)0.0170 (12)0.0053 (13)
N10.0235 (18)0.029 (2)0.0212 (16)0.0028 (15)0.0131 (14)0.0027 (15)
N20.0260 (17)0.0239 (19)0.0186 (15)0.0032 (15)0.0131 (13)0.0025 (15)
C10.034 (2)0.032 (3)0.021 (2)0.003 (2)0.0150 (18)0.006 (2)
C20.045 (3)0.031 (3)0.028 (2)−0.001 (2)0.021 (2)0.005 (2)
C30.039 (3)0.038 (3)0.027 (2)−0.016 (2)0.020 (2)−0.005 (2)
C40.027 (2)0.035 (3)0.023 (2)−0.003 (2)0.0144 (18)−0.007 (2)
C50.024 (2)0.029 (2)0.0179 (18)−0.003 (2)0.0125 (16)−0.0023 (19)
C60.0156 (19)0.031 (2)0.022 (2)−0.0003 (17)0.0067 (16)−0.0016 (19)
C70.023 (2)0.020 (2)0.023 (2)−0.0006 (16)0.0138 (17)0.0000 (16)
C80.026 (2)0.027 (2)0.027 (2)−0.0004 (18)0.0124 (18)−0.0006 (19)
C90.037 (2)0.033 (3)0.0168 (19)0.0050 (19)0.0116 (18)0.0022 (18)
C100.040 (2)0.037 (3)0.024 (2)0.007 (2)0.0197 (19)0.002 (2)
C110.030 (2)0.031 (2)0.026 (2)0.005 (2)0.0168 (17)0.001 (2)
O210.0333 (16)0.044 (2)0.0411 (16)−0.0030 (14)0.0264 (13)−0.0072 (14)
O220.0316 (17)0.062 (2)0.0295 (15)−0.0064 (15)0.0172 (13)−0.0119 (15)
C210.034 (2)0.032 (3)0.036 (2)0.004 (2)0.025 (2)0.004 (2)
C220.028 (2)0.031 (3)0.027 (2)0.0065 (19)0.0184 (18)0.003 (2)
C230.037 (2)0.032 (3)0.036 (2)0.002 (2)0.024 (2)0.002 (2)
C240.046 (3)0.046 (3)0.032 (2)0.002 (2)0.028 (2)0.002 (2)
C250.053 (3)0.039 (3)0.033 (2)0.014 (2)0.027 (2)0.003 (2)
C260.039 (2)0.030 (3)0.039 (2)0.002 (2)0.022 (2)−0.004 (2)
C270.036 (2)0.034 (3)0.042 (2)0.004 (2)0.028 (2)0.004 (2)
Ni1—N2i2.053 (3)C6—C71.525 (5)
Ni1—N22.053 (3)C7—C81.374 (5)
Ni1—N12.060 (3)C8—C91.383 (5)
Ni1—N1i2.060 (3)C8—H80.9500
Ni1—O1i2.109 (3)C9—C101.374 (5)
Ni1—O12.109 (2)C9—H90.9500
O1—C61.437 (4)C10—C111.377 (5)
O1—H1O0.8408C10—H100.9500
O2—C61.378 (4)C11—H110.9500
O2—H2O0.8405O21—C211.267 (4)
N1—C11.334 (4)O22—C211.247 (4)
N1—C51.353 (4)C21—C221.506 (5)
N2—C71.340 (4)C22—C271.388 (5)
N2—C111.340 (4)C22—C231.393 (5)
C1—C21.379 (5)C23—C241.373 (5)
C1—H10.9500C23—H230.9500
C2—C31.385 (5)C24—C251.368 (5)
C2—H20.9500C24—H240.9500
C3—C41.379 (5)C25—C261.373 (5)
C3—H30.9500C25—H250.9500
C4—C51.379 (5)C26—C271.393 (5)
C4—H40.9500C26—H260.9500
C5—C61.535 (5)C27—H270.9500
N2i—Ni1—N2172.49 (18)O2—C6—C7110.0 (3)
N2i—Ni1—N195.84 (11)O1—C6—C7104.5 (3)
N2—Ni1—N188.95 (11)O2—C6—C5113.4 (3)
N2i—Ni1—N1i88.95 (11)O1—C6—C5107.3 (3)
N2—Ni1—N1i95.84 (11)C7—C6—C5108.6 (3)
N1—Ni1—N1i100.79 (17)N2—C7—C8122.8 (3)
N2i—Ni1—O1i76.59 (10)N2—C7—C6112.6 (3)
N2—Ni1—O1i98.62 (10)C8—C7—C6124.5 (3)
N1—Ni1—O1i172.42 (10)C7—C8—C9117.6 (4)
N1i—Ni1—O1i78.91 (11)C7—C8—H8121.2
N2i—Ni1—O198.62 (10)C9—C8—H8121.2
N2—Ni1—O176.59 (10)C10—C9—C8120.5 (3)
N1—Ni1—O178.91 (11)C10—C9—H9119.7
N1i—Ni1—O1172.42 (10)C8—C9—H9119.7
O1i—Ni1—O1102.40 (14)C9—C10—C11118.1 (3)
C6—O1—Ni199.7 (2)C9—C10—H10120.9
C6—O1—H1O110.2C11—C10—H10120.9
Ni1—O1—H1O118.6N2—C11—C10122.3 (3)
C6—O2—H2O109.5N2—C11—H11118.8
C1—N1—C5118.7 (3)C10—C11—H11118.8
C1—N1—Ni1129.9 (2)O22—C21—O21124.8 (4)
C5—N1—Ni1111.5 (3)O22—C21—C22118.6 (3)
C7—N2—C11118.6 (3)O21—C21—C22116.6 (3)
C7—N2—Ni1112.1 (2)C27—C22—C23118.4 (4)
C11—N2—Ni1129.3 (2)C27—C22—C21121.3 (3)
N1—C1—C2122.4 (4)C23—C22—C21120.2 (4)
N1—C1—H1118.8C24—C23—C22120.7 (4)
C2—C1—H1118.8C24—C23—H23119.6
C1—C2—C3119.0 (4)C22—C23—H23119.6
C1—C2—H2120.5C25—C24—C23120.2 (4)
C3—C2—H2120.5C25—C24—H24119.9
C4—C3—C2118.9 (4)C23—C24—H24119.9
C4—C3—H3120.6C24—C25—C26120.6 (4)
C2—C3—H3120.6C24—C25—H25119.7
C3—C4—C5119.2 (4)C26—C25—H25119.7
C3—C4—H4120.4C25—C26—C27119.6 (4)
C5—C4—H4120.4C25—C26—H26120.2
N1—C5—C4121.9 (4)C27—C26—H26120.2
N1—C5—C6112.7 (3)C22—C27—C26120.4 (4)
C4—C5—C6125.5 (3)C22—C27—H27119.8
O2—C6—O1112.6 (3)C26—C27—H27119.8
D—H···AD—HH···AD···AD—H···A
O1—H1O···O210.841.702.537 (3)171
O2—H2O···O220.841.792.615 (4)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯O210.841.702.537 (3)171
O2—H2O⋯O220.841.792.615 (4)167
  11 in total

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