Literature DB >> 21753926

catena-Poly[[tetra-aqua-[trans-1,2-bis-(4-pyrid-yl)ethene-κN:N']nickel(II)] dinitrate].

Min Young Hyun, Pan-Gi Kim, Cheal Kim, Youngmee Kim.   

Abstract

In the title compound, {[Ni(C(12)H(10)N(2))(H(2)O)(4)](NO(3))(2)}(n), the Ni(II) ion, lying on a crystallographic inversion center, has a distorted octa-hedral coordination sphere comprising four water ligands and two N-atom donors from the trans-related 1,2-bis-(4-pyrid-yl)ethene ligands, which also have crystallographic inversion symmetry. These ligands bridge the Ni(II) complex units, forming chains extending along the [110] and [[Formula: see text]10] directions. The nitrate counter-anions stabilize the crystal structure through water-nitrate O-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21753926      PMCID: PMC3100072          DOI: 10.1107/S1600536811007021

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For inter­actions of metal ions with amino acids, see: Daniele et al. (2008 ▶); Parkin (2004 ▶); Tshuva & Lippard (2004 ▶). For related complexes,see: Lee et al. (2008 ▶); Yu et al. (2008 ▶); Park et al. (2008 ▶); Shin et al. (2009 ▶); Yu et al. (2009 ▶, 2010 ▶); Kim et al. (2011 ▶).

Experimental

Crystal data

[Ni(C12H10N2)(H2O)4](NO3)2 M = 436.99 Monoclinic, a = 7.415 (3) Å b = 11.426 (4) Å c = 10.950 (4) Å β = 97.307 (7)° V = 920.1 (6) Å3 Z = 2 Mo Kα radiation μ = 1.11 mm−1 T = 293 K 0.15 × 0.08 × 0.08 mm

Data collection

Bruker SMART CCD area-detector diffractometer 4954 measured reflections 1799 independent reflections 1116 reflections with I > 2σ(I) R int = 0.173

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.238 S = 1.14 1799 reflections 136 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.08 e Å−3 Δρmin = −1.86 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811007021/zs2096sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811007021/zs2096Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C12H10N2)(H2O)4](NO3)2F(000) = 452
Mr = 436.99Dx = 1.577 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1268 reflections
a = 7.415 (3) Åθ = 2.6–23.4°
b = 11.426 (4) ŵ = 1.11 mm1
c = 10.950 (4) ÅT = 293 K
β = 97.307 (7)°Block, brown
V = 920.1 (6) Å30.15 × 0.08 × 0.08 mm
Z = 2
Bruker SMART CCD area-detector diffractometer1116 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.173
graphiteθmax = 26.0°, θmin = 2.6°
φ and ω scansh = −8→9
4954 measured reflectionsk = −11→14
1799 independent reflectionsl = −11→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.238H atoms treated by a mixture of independent and constrained refinement
S = 1.14w = 1/[σ2(Fo2) + (0.1257P)2] where P = (Fo2 + 2Fc2)/3
1799 reflections(Δ/σ)max < 0.001
136 parametersΔρmax = 1.08 e Å3
4 restraintsΔρmin = −1.86 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0496 (8)0.7389 (5)−0.0578 (7)0.0346 (15)
H1−0.07050.7450−0.09390.042*
C20.1365 (8)0.6328 (5)−0.0637 (7)0.0414 (18)
H20.07580.5697−0.10380.050*
C30.3181 (8)0.6207 (5)−0.0086 (7)0.0364 (16)
C40.3954 (8)0.7169 (5)0.0524 (7)0.0374 (16)
H40.51370.71290.09230.045*
C50.2991 (7)0.8183 (5)0.0544 (7)0.0350 (16)
H50.35420.88140.09810.042*
C60.4117 (9)0.5087 (5)−0.0174 (8)0.0431 (19)
H60.34290.4452−0.04950.052*
N10.1284 (6)0.8326 (4)−0.0032 (5)0.0271 (11)
Ni10.00001.00000.00000.0287 (4)
O10.0809 (9)1.0135 (4)0.1951 (7)0.0630 (17)
H1A0.098 (12)0.946 (4)0.242 (7)0.076*
H1B0.200 (4)1.036 (7)0.189 (9)0.076*
O20.2381 (6)1.0811 (4)−0.0466 (7)0.0666 (18)
H2A0.226 (11)1.148 (5)−0.095 (7)0.080*
H2B0.306 (10)1.024 (6)−0.080 (9)0.080*
N20.4686 (7)0.8286 (5)0.7660 (6)0.0481 (16)
O30.4935 (7)0.9318 (4)0.8009 (6)0.0684 (17)
O40.5938 (8)0.7571 (5)0.7875 (7)0.0699 (18)
O50.3209 (7)0.7990 (5)0.7106 (7)0.083 (2)
U11U22U33U12U13U23
C10.031 (3)0.026 (3)0.046 (4)0.005 (2)0.000 (3)−0.002 (3)
C20.030 (3)0.023 (3)0.069 (5)0.003 (2)−0.005 (3)−0.010 (3)
C30.030 (3)0.018 (3)0.060 (5)0.009 (2)−0.001 (3)0.004 (3)
C40.028 (3)0.018 (3)0.064 (5)0.004 (2)−0.005 (3)0.000 (3)
C50.024 (3)0.020 (3)0.060 (5)0.001 (2)0.001 (3)−0.001 (3)
C60.037 (3)0.014 (3)0.076 (6)0.009 (2)0.000 (3)−0.003 (3)
N10.027 (2)0.022 (2)0.033 (3)0.0061 (19)0.005 (2)−0.001 (2)
Ni10.0214 (6)0.0136 (6)0.0485 (8)0.0038 (4)−0.0049 (5)−0.0014 (4)
O10.066 (4)0.051 (3)0.066 (4)0.000 (3)−0.013 (3)0.000 (3)
O20.044 (3)0.035 (3)0.121 (6)0.003 (2)0.010 (3)0.012 (3)
N20.040 (3)0.036 (3)0.064 (5)−0.003 (2)−0.012 (3)−0.010 (3)
O30.064 (3)0.035 (3)0.098 (5)−0.008 (2)−0.018 (3)−0.016 (3)
O40.059 (3)0.059 (3)0.091 (5)0.017 (3)0.006 (3)−0.008 (3)
O50.055 (3)0.074 (4)0.110 (6)−0.017 (3)−0.030 (4)−0.016 (4)
C1—N11.326 (7)N1—Ni12.138 (4)
C1—C21.378 (8)Ni1—O22.113 (5)
C1—H10.9300Ni1—O2ii2.113 (5)
C2—C31.411 (8)Ni1—N1ii2.138 (4)
C2—H20.9300Ni1—O1ii2.149 (7)
C3—C41.373 (8)Ni1—O12.149 (7)
C3—C61.465 (8)O1—H1A0.93 (6)
C4—C51.362 (7)O1—H1B0.93 (4)
C4—H40.9300O2—H2A0.93 (6)
C5—N11.350 (7)O2—H2B0.93 (7)
C5—H50.9300N2—O51.231 (6)
C6—C6i1.331 (13)N2—O41.236 (7)
C6—H60.9300N2—O31.245 (7)
N1—C1—C2123.4 (5)O2ii—Ni1—N1ii90.05 (18)
N1—C1—H1118.3O2—Ni1—N190.05 (18)
C2—C1—H1118.3O2ii—Ni1—N189.95 (18)
C1—C2—C3119.5 (5)N1ii—Ni1—N1180.0
C1—C2—H2120.3O2—Ni1—O1ii85.9 (3)
C3—C2—H2120.3O2ii—Ni1—O1ii94.1 (3)
C4—C3—C2116.5 (5)N1ii—Ni1—O1ii90.7 (2)
C4—C3—C6124.0 (5)N1—Ni1—O1ii89.3 (2)
C2—C3—C6119.5 (5)O2—Ni1—O194.1 (3)
C5—C4—C3120.1 (5)O2ii—Ni1—O185.9 (3)
C5—C4—H4119.9N1ii—Ni1—O189.3 (2)
C3—C4—H4119.9N1—Ni1—O190.7 (2)
N1—C5—C4123.9 (6)O1ii—Ni1—O1179.999 (2)
N1—C5—H5118.1Ni1—O1—H1A119 (6)
C4—C5—H5118.1Ni1—O1—H1B96 (6)
C6i—C6—C3124.7 (7)H1A—O1—H1B102 (8)
C6i—C6—H6117.7Ni1—O2—H2A118 (5)
C3—C6—H6117.7Ni1—O2—H2B108 (5)
C1—N1—C5116.5 (5)H2A—O2—H2B112 (9)
C1—N1—Ni1123.9 (4)O5—N2—O4120.8 (6)
C5—N1—Ni1119.6 (4)O5—N2—O3120.0 (6)
O2—Ni1—O2ii180.0O4—N2—O3119.3 (5)
O2—Ni1—N1ii89.95 (18)
N1—C1—C2—C30.7 (12)C4—C5—N1—C14.3 (10)
C1—C2—C3—C42.2 (11)C4—C5—N1—Ni1−176.6 (6)
C1—C2—C3—C6−178.6 (7)C1—N1—Ni1—O2−134.3 (5)
C2—C3—C4—C5−1.8 (11)C5—N1—Ni1—O246.7 (5)
C6—C3—C4—C5179.1 (7)C1—N1—Ni1—O2ii45.7 (5)
C3—C4—C5—N1−1.5 (11)C5—N1—Ni1—O2ii−133.3 (5)
C4—C3—C6—C6i−9.6 (17)C1—N1—Ni1—O1ii−48.4 (5)
C2—C3—C6—C6i171.3 (11)C5—N1—Ni1—O1ii132.5 (5)
C2—C1—N1—C5−3.8 (10)C1—N1—Ni1—O1131.6 (5)
C2—C1—N1—Ni1177.1 (6)C5—N1—Ni1—O1−47.5 (5)
D—H···AD—HH···AD···AD—H···A
O2—H2B···O3iii0.93 (7)2.28 (8)3.176 (9)162 (8)
O2—H2A···O5iv0.93 (6)2.14 (7)3.068 (8)176 (7)
O1—H1B···O3v0.93 (4)2.29 (2)3.212 (9)170 (8)
O1—H1A···O4vi0.93 (6)2.37 (3)3.252 (8)158 (7)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2B⋯O3i0.93 (7)2.28 (8)3.176 (9)162 (8)
O2—H2A⋯O5ii0.93 (6)2.14 (7)3.068 (8)176 (7)
O1—H1B⋯O3iii0.93 (4)2.29 (2)3.212 (9)170 (8)
O1—H1A⋯O4iv0.93 (6)2.37 (3)3.252 (8)158 (7)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  10 in total

Review 1.  Synthetic analogues relevant to the structure and function of zinc enzymes.

Authors:  Gerard Parkin
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

Review 2.  Synthetic models for non-heme carboxylate-bridged diiron metalloproteins: strategies and tactics.

Authors:  Edit Y Tshuva; Stephen J Lippard
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  catena-Poly[[bis-(2-hydr-oxy-2-phenyl-acetato-κO,O)zinc(II)]-μ-1,2-di-4-pyridylethane-κN:N'].

Authors:  Seung Man Yu; Dong Hoon Shin; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

5.  A neutral cubane with a Zn(4)O(4) core: tetra-benzoato-tetra-kis(μ(3)-hydroxydi-2-pyridylmethano-lato)tetra-zinc(II)-acetone-methanol (1/2/1).

Authors:  Dong Hoon Shin; Sim-Hee Han; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

6.  Tetra-μ-benzoato-bis-{[4-(pyrrolidin-1-yl)pyridine]zinc(II)}.

Authors:  Seung Man Yu; Kyosang Koo; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12

7.  Tetra-μ-benzoato-bis-[(3-methyl-quinoline)copper(II)](Cu-Cu).

Authors:  Byeong Kwon Park; Kyung-Hwan Jang; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-09

8.  Tetra-μ-benzoato-bis-[(6-methyl-quino-line)-copper(II)].

Authors:  Seung Man Yu; Chi-Ho Park; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-07

9.  Tetra-μ-benzoato-bis-[(quinoxaline)copper(II)].

Authors:  Eun Yong Lee; Byeong Kwon Park; Cheal Kim; Sung-Jin Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-04

10.  Poly[[bis-[μ-1,2-bis-(4-pyrid-yl)ethene]bis-(trichloro-acetato)-cadmium(II)] monohydrate].

Authors:  Jin Hoon Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-04
  10 in total
  2 in total

1.  catena-Poly[[bis-(2,4-dichloro-benzoato)bis-(methanol-κO)cobalt(II)]-μ-4,4'-bipyridine-κN:N'].

Authors:  Min Young Hyun; Pan-Gi Kim; Cheal Kim; Youngmee Kim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-09

2.  Crystal structure of catena-poly[[[trans-bis(aceto-nitrile-κN)diaquacobalt(II)]-μ-pyrazine-κ(2) N:N'] dinitrate].

Authors:  Chen Liu; Ashley C Felts; Annaliese E Thuijs; Aaron Useche; Khalil A Abboud
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-01-13
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.