Literature DB >> 21533787

NMR-based structural biology of proteins in supercooled water.

Thomas Szyperski1, Jeffrey L Mills.   

Abstract

NMR-based structural biology of proteins can be pursued efficiently in supercooled water at temperatures well below the freezing point of water. This enables one to study protein structure, dynamics, hydration and cold denaturation in an unperturbed aqueous solution at very low temperatures. Furthermore, such studies enable one to accurately measure thermodynamic parameters associated with protein cold denaturation. Presently available approaches to acquire NMR data for supercooled aqueous protein solutions are surveyed, new insights obtained from such studies are summarized, and future perspectives are discussed.

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Year:  2011        PMID: 21533787     DOI: 10.1007/s10969-011-9111-5

Source DB:  PubMed          Journal:  J Struct Funct Genomics        ISSN: 1345-711X


  25 in total

1.  Protein dynamics in supercooled water: the search for slow motional modes.

Authors:  Jeffrey L Mills; Thomas Szyperski
Journal:  J Biomol NMR       Date:  2002-05       Impact factor: 2.835

Review 2.  Cold denaturation of proteins.

Authors:  P L Privalov
Journal:  Crit Rev Biochem Mol Biol       Date:  1990       Impact factor: 8.250

Review 3.  Heat capacity in proteins.

Authors:  Ninad V Prabhu; Kim A Sharp
Journal:  Annu Rev Phys Chem       Date:  2005       Impact factor: 12.703

4.  Cold denaturation of encapsulated ubiquitin.

Authors:  Maxim S Pometun; Ronald W Peterson; Charles R Babu; A Joshua Wand
Journal:  J Am Chem Soc       Date:  2006-08-23       Impact factor: 15.419

5.  Cold denaturation and aggregation: a comparative NMR study of titin I28 in bulk and in a confined environment.

Authors:  Domenico Sanfelice; Teodorico Tancredi; Anastasia Politou; Annalisa Pastore; Piero A Temussi
Journal:  J Am Chem Soc       Date:  2009-08-26       Impact factor: 15.419

Review 6.  Proteins that switch folds.

Authors:  Philip N Bryan; John Orban
Journal:  Curr Opin Struct Biol       Date:  2010-06-28       Impact factor: 6.809

7.  NMR spectroscopy of hydroxyl protons in supercooled carbohydrates.

Authors:  L Poppe; H van Halbeek
Journal:  Nat Struct Biol       Date:  1994-04

8.  The cold denatured state of the C-terminal domain of protein L9 is compact and contains both native and non-native structure.

Authors:  Bing Shan; Sebastian McClendon; Carla Rospigliosi; David Eliezer; Daniel P Raleigh
Journal:  J Am Chem Soc       Date:  2010-04-07       Impact factor: 15.419

9.  Analysis of CASP8 targets, predictions and assessment methods.

Authors:  Shuoyong Shi; Jimin Pei; Ruslan I Sadreyev; Lisa N Kinch; Indraneel Majumdar; Jing Tong; Hua Cheng; Bong-Hyun Kim; Nick V Grishin
Journal:  Database (Oxford)       Date:  2009-04-14       Impact factor: 3.451

10.  Dynamics of protein and peptide hydration.

Authors:  Kristofer Modig; Edvards Liepinsh; Gottfried Otting; Bertil Halle
Journal:  J Am Chem Soc       Date:  2004-01-14       Impact factor: 15.419

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  7 in total

1.  High-pressure NMR reveals close similarity between cold and alcohol protein denaturation in ubiquitin.

Authors:  Navratna Vajpai; Lydia Nisius; Maciej Wiktor; Stephan Grzesiek
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-02       Impact factor: 11.205

2.  MAS 1H NMR Probes Freezing Point Depression of Water and Liquid-Gel Phase Transitions in Liposomes.

Authors:  Abhishek Mandal; Patrick C A van der Wel
Journal:  Biophys J       Date:  2016-11-01       Impact factor: 4.033

3.  Using NMR and molecular dynamics to link structure and dynamics effects of the universal base 8-aza, 7-deaza, N8 linked adenosine analog.

Authors:  Alexander M Spring-Connell; Marina G Evich; Harald Debelak; Frank Seela; Markus W Germann
Journal:  Nucleic Acids Res       Date:  2016-08-26       Impact factor: 16.971

4.  Cold denaturation of a protein dimer monitored at atomic resolution.

Authors:  Mariusz Jaremko; Łukasz Jaremko; Hai-Young Kim; Min-Kyu Cho; Charles D Schwieters; Karin Giller; Stefan Becker; Markus Zweckstetter
Journal:  Nat Chem Biol       Date:  2013-02-10       Impact factor: 15.040

5.  Crystal cryocooling distorts conformational heterogeneity in a model Michaelis complex of DHFR.

Authors:  Daniel A Keedy; Henry van den Bedem; David A Sivak; Gregory A Petsko; Dagmar Ringe; Mark A Wilson; James S Fraser
Journal:  Structure       Date:  2014-05-29       Impact factor: 5.006

6.  Cold-induced changes in the protein ubiquitin.

Authors:  Min-Kyu Cho; Shengqi Xiang; Hai-Young Kim; Stefan Becker; Markus Zweckstetter
Journal:  PLoS One       Date:  2012-06-21       Impact factor: 3.240

7.  From Protein Design to the Energy Landscape of a Cold Unfolding Protein.

Authors:  Surya V S R K Pulavarti; Jack B Maguire; Shirley Yuen; Joseph S Harrison; Jermel Griffin; Lakshmanane Premkumar; Edward A Esposito; George I Makhatadze; Angel E Garcia; Thomas M Weiss; Edward H Snell; Brian Kuhlman; Thomas Szyperski
Journal:  J Phys Chem B       Date:  2022-02-07       Impact factor: 3.466

  7 in total

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