Literature DB >> 23396077

Cold denaturation of a protein dimer monitored at atomic resolution.

Mariusz Jaremko1, Łukasz Jaremko, Hai-Young Kim, Min-Kyu Cho, Charles D Schwieters, Karin Giller, Stefan Becker, Markus Zweckstetter.   

Abstract

Protein folding and unfolding are crucial for a range of biological phenomena and human diseases. Defining the structural properties of the involved transient species is therefore of prime interest. Using a combination of cold denaturation with NMR spectroscopy, we reveal detailed insight into the unfolding of the homodimeric repressor protein CylR2. Seven three-dimensional structures of CylR2 at temperatures from 25 °C to -16 °C reveal a progressive dissociation of the dimeric protein into a native-like monomeric intermediate followed by transition into a highly dynamic, partially folded state. The core of the partially folded state seems critical for biological function and misfolding.

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Year:  2013        PMID: 23396077      PMCID: PMC5521822          DOI: 10.1038/nchembio.1181

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  48 in total

1.  Specific non-native hydrophobic interactions in a hidden folding intermediate: implications for protein folding.

Authors:  Hanqiao Feng; Jiro Takei; Rebecca Lipsitz; Nico Tjandra; Yawen Bai
Journal:  Biochemistry       Date:  2003-11-04       Impact factor: 3.162

Review 2.  Protein engineering.

Authors:  A Fersht; G Winter
Journal:  Trends Biochem Sci       Date:  1992-08       Impact factor: 13.807

3.  The folding pathway of T4 lysozyme: the high-resolution structure and folding of a hidden intermediate.

Authors:  Hidenori Kato; Hanqiao Feng; Yawen Bai
Journal:  J Mol Biol       Date:  2006-10-21       Impact factor: 5.469

4.  Phi-value analysis of a three-state protein folding pathway by NMR relaxation dispersion spectroscopy.

Authors:  Philipp Neudecker; Arash Zarrine-Afsar; Alan R Davidson; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-26       Impact factor: 11.205

5.  Protein cold denaturation as seen from the solvent.

Authors:  Monika Davidovic; Carlos Mattea; Johan Qvist; Bertil Halle
Journal:  J Am Chem Soc       Date:  2009-01-28       Impact factor: 15.419

Review 6.  From the first protein structures to our current knowledge of protein folding: delights and scepticisms.

Authors:  Alan R Fersht
Journal:  Nat Rev Mol Cell Biol       Date:  2008-06-25       Impact factor: 94.444

7.  How robust are protein folding simulations with respect to force field parameterization?

Authors:  Stefano Piana; Kresten Lindorff-Larsen; David E Shaw
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

Review 8.  Protein folding kinetics.

Authors:  T Kiefhaber
Journal:  Methods Mol Biol       Date:  1995

Review 9.  Intermediates: ubiquitous species on folding energy landscapes?

Authors:  David J Brockwell; Sheena E Radford
Journal:  Curr Opin Struct Biol       Date:  2007-01-18       Impact factor: 6.809

10.  Pressure-induced unfolding of the molten globule of all-Ala alpha-lactalbumin.

Authors:  Michael W Lassalle; Hua Li; Hiroaki Yamada; Kazuyuki Akasaka; Christina Redfield
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

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  12 in total

1.  Identification and Characterization of an Inside-Out Folding Intermediate of T4 Phage Sliding Clamp.

Authors:  Manika Indrajit Singh; Vikas Jain
Journal:  Biophys J       Date:  2017-10-17       Impact factor: 4.033

2.  Structural biology: Protein self-assembly intermediates.

Authors:  Michele Vendruscolo; Christopher M Dobson
Journal:  Nat Chem Biol       Date:  2013-04       Impact factor: 15.040

3.  "Invisible" conformers of an antifungal disulfide protein revealed by constrained cold and heat unfolding, CEST-NMR experiments, and molecular dynamics calculations.

Authors:  Ádám Fizil; Zoltán Gáspári; Terézia Barna; Florentine Marx; Gyula Batta
Journal:  Chemistry       Date:  2015-02-12       Impact factor: 5.236

4.  γS-crystallin proteins from the Antarctic nototheniid toothfish: a model system for investigating differential resistance to chemical and thermal denaturation.

Authors:  Carolyn N Kingsley; Jan C Bierma; Vyvy Pham; Rachel W Martin
Journal:  J Phys Chem B       Date:  2014-11-18       Impact factor: 2.991

5.  Structural accommodations accompanying splicing of a group II intron RNP.

Authors:  Xiaolong Dong; Srivathsan Ranganathan; Guosheng Qu; Carol Lyn Piazza; Marlene Belfort
Journal:  Nucleic Acids Res       Date:  2018-09-19       Impact factor: 16.971

6.  Hydration shell differentiates folded and disordered states of a Trp-cage miniprotein, allowing characterization of structural heterogeneity by wide-line NMR measurements.

Authors:  Nóra Taricska; Mónika Bokor; Dóra K Menyhárd; Kálmán Tompa; András Perczel
Journal:  Sci Rep       Date:  2019-02-27       Impact factor: 4.379

7.  The near-symmetry of protein oligomers: NMR-derived structures.

Authors:  Maayan Bonjack; David Avnir
Journal:  Sci Rep       Date:  2020-05-20       Impact factor: 4.379

Review 8.  Functional and Regulatory Roles of Fold-Switching Proteins.

Authors:  Allen K Kim; Lauren L Porter
Journal:  Structure       Date:  2020-11-10       Impact factor: 5.006

9.  The Complex Energy Landscape of the Protein IscU.

Authors:  Jameson R Bothe; Marco Tonelli; Ibrahim K Ali; Ziqi Dai; Ronnie O Frederick; William M Westler; John L Markley
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

Review 10.  Dual-Family Peptidylprolyl Isomerases (Immunophilins) of Select Monocellular Organisms.

Authors:  Sailen Barik
Journal:  Biomolecules       Date:  2018-11-15
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