Literature DB >> 20591649

Proteins that switch folds.

Philip N Bryan1, John Orban.   

Abstract

An increasing number of proteins demonstrate the ability to switch between very different fold topologies, expanding their functional utility through new binding interactions. Recent examples of fold switching from naturally occurring and designed systems have a number of common features: (i) The structural transitions require states with diminished stability; (ii) Switching involves flexible regions in one conformer or the other; (iii) A new binding surface is revealed in the alternate fold that can lead to both stabilization of the alternative state and expansion of biological function. Fold switching not only provides insight into how new folds evolve, but also indicates that an amino acid sequence has more information content than previously thought. A polypeptide chain can encode a stable fold while simultaneously hiding latent propensities for alternative states with novel functions. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20591649      PMCID: PMC2928869          DOI: 10.1016/j.sbi.2010.06.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  56 in total

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2.  The design and characterization of two proteins with 88% sequence identity but different structure and function.

Authors:  Patrick A Alexander; Yanan He; Yihong Chen; John Orban; Philip N Bryan
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-03       Impact factor: 11.205

3.  A folding space odyssey.

Authors:  Alan R Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

4.  Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds.

Authors:  Christian G Roessler; Branwen M Hall; William J Anderson; Wendy M Ingram; Sue A Roberts; William R Montfort; Matthew H J Cordes
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-28       Impact factor: 11.205

5.  Biochemistry. Metamorphic proteins.

Authors:  Alexey G Murzin
Journal:  Science       Date:  2008-06-27       Impact factor: 47.728

Review 6.  MAD contortions: conformational dimerization boosts spindle checkpoint signaling.

Authors:  Marina Mapelli; Andrea Musacchio
Journal:  Curr Opin Struct Biol       Date:  2007-10-24       Impact factor: 6.809

Review 7.  Structures of vesicular stomatitis virus glycoprotein: membrane fusion revisited.

Authors:  S Roche; A A V Albertini; J Lepault; S Bressanelli; Y Gaudin
Journal:  Cell Mol Life Sci       Date:  2008-06       Impact factor: 9.261

8.  Interconversion between two unrelated protein folds in the lymphotactin native state.

Authors:  Robbyn L Tuinstra; Francis C Peterson; Snjezana Kutlesa; E Sonay Elgin; Michael A Kron; Brian F Volkman
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-25       Impact factor: 11.205

9.  Structure of influenza haemagglutinin at the pH of membrane fusion.

Authors:  P A Bullough; F M Hughson; J J Skehel; D C Wiley
Journal:  Nature       Date:  1994-09-01       Impact factor: 49.962

Review 10.  Viral membrane fusion.

Authors:  Stephen C Harrison
Journal:  Nat Struct Mol Biol       Date:  2008-07       Impact factor: 15.369

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  73 in total

1.  Is a malleable protein necessarily highly dynamic? The hydrophobic core of the nuclear coactivator binding domain is well ordered.

Authors:  Magnus Kjaergaard; Flemming M Poulsen; Kaare Teilum
Journal:  Biophys J       Date:  2012-04-03       Impact factor: 4.033

Review 2.  Converting a protein into a switch for biosensing and functional regulation.

Authors:  Margaret M Stratton; Stewart N Loh
Journal:  Protein Sci       Date:  2011-01       Impact factor: 6.725

Review 3.  Constraint methods that accelerate free-energy simulations of biomolecules.

Authors:  Alberto Perez; Justin L MacCallum; Evangelos A Coutsias; Ken A Dill
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

4.  Evolutionary bridges to new protein folds: design of C-terminal Cro protein chameleon sequences.

Authors:  William J Anderson; Laura O Van Dorn; Wendy M Ingram; Matthew H J Cordes
Journal:  Protein Eng Des Sel       Date:  2011-06-14       Impact factor: 1.650

Review 5.  NMR-based structural biology of proteins in supercooled water.

Authors:  Thomas Szyperski; Jeffrey L Mills
Journal:  J Struct Funct Genomics       Date:  2011-05-01

Review 6.  RNA polymerase and the ribosome: the close relationship.

Authors:  Katelyn McGary; Evgeny Nudler
Journal:  Curr Opin Microbiol       Date:  2013-02-22       Impact factor: 7.934

7.  Studying protein fold evolution with hybrids of differently folded homologs.

Authors:  Karen V Eaton; William J Anderson; Matthew S Dubrava; Vlad K Kumirov; Emily M Dykstra; Matthew H J Cordes
Journal:  Protein Eng Des Sel       Date:  2015-05-19       Impact factor: 1.650

8.  Comprehensive analysis of sequences of a protein switch.

Authors:  Szu-Hua Chen; Jaroslaw Meller; Ron Elber
Journal:  Protein Sci       Date:  2015-07-01       Impact factor: 6.725

9.  Two is a pair, three is a network.

Authors:  Ron Elber
Journal:  Biophys J       Date:  2015-01-06       Impact factor: 4.033

Review 10.  Regulated unfolding of proteins in signaling.

Authors:  Diana M Mitrea; Richard W Kriwacki
Journal:  FEBS Lett       Date:  2013-02-20       Impact factor: 4.124

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