Literature DB >> 12061719

Protein dynamics in supercooled water: the search for slow motional modes.

Jeffrey L Mills1, Thomas Szyperski.   

Abstract

The impact of studying protein dynamics in supercooled water for identifying slow motional modes on the micros time scale is demonstrated. Backbone 15N spin relaxation parameters were measured at -13 degrees C for ubiquitin, which plays a central role for signaling proteolysis, cellular trafficking and kinase activation in eukaryotic organisms. A hitherto undetected motional mode involving Val 70 was found, which may well play an important role for ubiquitin recognition. The measurement of rotating frame 15N relaxation times as a function of the spin-lock field allowed determination of the correlation time of this motional mode, which would not have been feasible above 0 degrees C.

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Year:  2002        PMID: 12061719     DOI: 10.1023/a:1015397305148

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  20 in total

Review 1.  Dynamic activation of protein function: a view emerging from NMR spectroscopy.

Authors:  A J Wand
Journal:  Nat Struct Biol       Date:  2001-11

2.  Structural and dynamic analysis of residual dipolar coupling data for proteins.

Authors:  J R Tolman; H M Al-Hashimi; L E Kay; J H Prestegard
Journal:  J Am Chem Soc       Date:  2001-02-21       Impact factor: 15.419

Review 3.  Ubiquitin enters the new millennium.

Authors:  C M Pickart
Journal:  Mol Cell       Date:  2001-09       Impact factor: 17.970

Review 4.  Protein dynamics from NMR.

Authors:  R Ishima; D A Torchia
Journal:  Nat Struct Biol       Date:  2000-09

5.  Characterization of the binding interface between ubiquitin and class I human ubiquitin-conjugating enzyme 2b by multidimensional heteronuclear NMR spectroscopy in solution.

Authors:  T Miura; W Klaus; B Gsell; C Miyamoto; H Senn
Journal:  J Mol Biol       Date:  1999-07-02       Impact factor: 5.469

6.  Two folded conformers of ubiquitin revealed by high-pressure NMR.

Authors:  R Kitahara; H Yamada; K Akasaka
Journal:  Biochemistry       Date:  2001-11-13       Impact factor: 3.162

7.  Pervasive conformational fluctuations on microsecond time scales in a fibronectin type III domain.

Authors:  M Akke; J Liu; J Cavanagh; H P Erickson; A G Palmer
Journal:  Nat Struct Biol       Date:  1998-01

8.  An NMR analysis of ubiquitin recognition by yeast ubiquitin hydrolase: evidence for novel substrate recognition by a cysteine protease.

Authors:  T Sakamoto; T Tanaka; Y Ito; S Rajesh; M Iwamoto-Sugai; Y Kodera; N Tsuchida; T Shibata; T Kohno
Journal:  Biochemistry       Date:  1999-09-07       Impact factor: 3.162

9.  Protein dynamics studied by rotating frame 15N spin relaxation times.

Authors:  T Szyperski; P Luginbühl; G Otting; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

10.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

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  14 in total

1.  Triple quantum decoherence under multiple refocusing: slow correlated chemical shift modulations of C' and N nuclei in proteins.

Authors:  Julien Wist; Dominique Frueh; Joel R Tolman; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2004-03       Impact factor: 2.835

Review 2.  Using protein motion to read, write, and erase ubiquitin signals.

Authors:  Aaron H Phillips; Jacob E Corn
Journal:  J Biol Chem       Date:  2015-09-09       Impact factor: 5.157

3.  Combined NMR-observation of cold denaturation in supercooled water and heat denaturation enables accurate measurement of deltaC(p) of protein unfolding.

Authors:  Thomas Szyperski; Jeffrey L Mills; Dieter Perl; Jochen Balbach
Journal:  Eur Biophys J       Date:  2005-10-21       Impact factor: 1.733

4.  A thorough dynamic interpretation of residual dipolar couplings in ubiquitin.

Authors:  Nils A Lakomek; Teresa Carlomagno; Stefan Becker; Christian Griesinger; Jens Meiler
Journal:  J Biomol NMR       Date:  2006-02       Impact factor: 2.835

5.  Pressure effects on the ensemble dynamics of ubiquitin inspected with molecular dynamics simulations and isotropic reorientational eigenmode dynamics.

Authors:  Nikolaos G Sgourakis; Ryan Day; Scott A McCallum; Angel E Garcia
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

6.  Characterization of conformational and dynamic properties of natively unfolded human and mouse alpha-synuclein ensembles by NMR: implication for aggregation.

Authors:  Kuen-Phon Wu; Seho Kim; David A Fela; Jean Baum
Journal:  J Mol Biol       Date:  2008-03-18       Impact factor: 5.469

Review 7.  NMR-based structural biology of proteins in supercooled water.

Authors:  Thomas Szyperski; Jeffrey L Mills
Journal:  J Struct Funct Genomics       Date:  2011-05-01

8.  Structural heterogeneity in microcrystalline ubiquitin studied by solid-state NMR.

Authors:  Hannes Klaus Fasshuber; Nils-Alexander Lakomek; Birgit Habenstein; Antoine Loquet; Chaowei Shi; Karin Giller; Sebastian Wolff; Stefan Becker; Adam Lange
Journal:  Protein Sci       Date:  2015-03-16       Impact factor: 6.725

9.  Microsecond timescale backbone conformational dynamics in ubiquitin studied with NMR R1rho relaxation experiments.

Authors:  Francesca Massi; Michael J Grey; Arthur G Palmer
Journal:  Protein Sci       Date:  2005-03       Impact factor: 6.725

10.  Conformational dynamics and structural plasticity play critical roles in the ubiquitin recognition of a UIM domain.

Authors:  Nikolaos G Sgourakis; Mayank M Patel; Angel E Garcia; George I Makhatadze; Scott A McCallum
Journal:  J Mol Biol       Date:  2010-01-04       Impact factor: 5.469

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