Literature DB >> 16910639

Cold denaturation of encapsulated ubiquitin.

Maxim S Pometun1, Ronald W Peterson, Charles R Babu, A Joshua Wand.   

Abstract

Theoretical considerations suggest that protein cold denaturation can potentially provide a means to explore the cooperative substructure of proteins. Protein cold denaturation is generally predicted to occur well below the freezing point of water. Here NMR spectroscopy of ubiquitin encapsulated in reverse micelles dissolved in low viscosity alkanes is used to follow cold-induced unfolding to temperatures below -25 degrees C. Comparison of cold-induced structural transitions in a variety of reverse micelle-buffer systems indicate that protein-surfactant interactions are negligible and allow the direct observation of the multistate cold-induced unfolding of the protein.

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Year:  2006        PMID: 16910639      PMCID: PMC2538947          DOI: 10.1021/ja0628654

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  16 in total

1.  Validation of protein structure from preparations of encapsulated proteins dissolved in low viscosity fluids.

Authors:  C R Babu; P F Flynn; A J Wand
Journal:  J Am Chem Soc       Date:  2001-03-21       Impact factor: 15.419

2.  A simple thermodynamic test to discriminate between two-state and downhill folding.

Authors:  Fabiana Y Oliva; Victor Muñoz
Journal:  J Am Chem Soc       Date:  2004-07-21       Impact factor: 15.419

3.  Ensemble-based signatures of energy propagation in proteins: a new view of an old phenomenon.

Authors:  Tong Liu; Steven T Whitten; Vincent J Hilser
Journal:  Proteins       Date:  2006-03-15

4.  Novel surfactant mixtures for NMR spectroscopy of encapsulated proteins dissolved in low-viscosity fluids.

Authors:  Ronald W Peterson; Maxim S Pometun; Zhengshuang Shi; A Joshua Wand
Journal:  Protein Sci       Date:  2005-09-30       Impact factor: 6.725

5.  Low-temperature studies of encapsulated proteins.

Authors:  Wade D Van Horn; Alana K Simorellis; Peter F Flynn
Journal:  J Am Chem Soc       Date:  2005-10-05       Impact factor: 15.419

Review 6.  Statistical thermodynamic linkage between conformational and binding equilibria.

Authors:  E Freire
Journal:  Adv Protein Chem       Date:  1998

7.  High-resolution NMR of encapsulated proteins dissolved in low-viscosity fluids.

Authors:  A J Wand; M R Ehrhardt; P F Flynn
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-22       Impact factor: 11.205

Review 8.  Theory of protein folding: the energy landscape perspective.

Authors:  J N Onuchic; Z Luthey-Schulten; P G Wolynes
Journal:  Annu Rev Phys Chem       Date:  1997       Impact factor: 12.703

9.  Anion binding to the ubiquitin molecule.

Authors:  G I Makhatadze; M M Lopez; J M Richardson; S T Thomas
Journal:  Protein Sci       Date:  1998-03       Impact factor: 6.725

10.  Cold denaturation of ubiquitin.

Authors:  B Ibarra-Molero; G I Makhatadze; J M Sanchez-Ruiz
Journal:  Biochim Biophys Acta       Date:  1999-01-11
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  20 in total

1.  Protein folding and unfolding studied at atomic resolution by fast two-dimensional NMR spectroscopy.

Authors:  Paul Schanda; Vincent Forge; Bernhard Brutscher
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-25       Impact factor: 11.205

2.  An alpha-helical peptide in AOT micelles prefers to be localized at the water/headgroup interface.

Authors:  Jianhui Tian; Angel E Garcia
Journal:  Biophys J       Date:  2009-05-20       Impact factor: 4.033

3.  Observation of solvent penetration during cold denaturation of E. coli phosphofructokinase-2.

Authors:  César A Ramírez-Sarmiento; Mauricio Baez; Christian A M Wilson; Jorge Babul; Elizabeth A Komives; Victoria Guixé
Journal:  Biophys J       Date:  2013-05-21       Impact factor: 4.033

4.  Simulations of the confinement of ubiquitin in self-assembled reverse micelles.

Authors:  Jianhui Tian; Angel E García
Journal:  J Chem Phys       Date:  2011-06-14       Impact factor: 3.488

Review 5.  NMR-based structural biology of proteins in supercooled water.

Authors:  Thomas Szyperski; Jeffrey L Mills
Journal:  J Struct Funct Genomics       Date:  2011-05-01

6.  The Unfolded State of the C-Terminal Domain of L9 Expands at Low but Not at Elevated Temperatures.

Authors:  Natalie E Stenzoski; Bowu Luan; Alex S Holehouse; Daniel P Raleigh
Journal:  Biophys J       Date:  2018-07-23       Impact factor: 4.033

7.  Mapping the hydration dynamics of ubiquitin.

Authors:  Nathaniel V Nucci; Maxim S Pometun; A Joshua Wand
Journal:  J Am Chem Soc       Date:  2011-07-22       Impact factor: 15.419

8.  Optimization of NMR spectroscopy of encapsulated proteins dissolved in low viscosity fluids.

Authors:  Nathaniel V Nucci; Bryan S Marques; Sabrina Bédard; Jakob Dogan; John M Gledhill; Veronica R Moorman; Ronald W Peterson; Kathleen G Valentine; Alison L Wand; A Joshua Wand
Journal:  J Biomol NMR       Date:  2011-07-12       Impact factor: 2.835

Review 9.  A method for solution NMR structural studies of large integral membrane proteins: reverse micelle encapsulation.

Authors:  Joseph M Kielec; Kathleen G Valentine; A Joshua Wand
Journal:  Biochim Biophys Acta       Date:  2009-08-08

Review 10.  High-resolution NMR spectroscopy of encapsulated proteins dissolved in low-viscosity fluids.

Authors:  Nathaniel V Nucci; Kathleen G Valentine; A Joshua Wand
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

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