Literature DB >> 21828278

Genome engineering with zinc-finger nucleases.

Dana Carroll1.   

Abstract

Zinc-finger nucleases (ZFNs) are targetable DNA cleavage reagents that have been adopted as gene-targeting tools. ZFN-induced double-strand breaks are subject to cellular DNA repair processes that lead to both targeted mutagenesis and targeted gene replacement at remarkably high frequencies. This article briefly reviews the history of ZFN development and summarizes applications that have been made to genome editing in many different organisms and situations. Considerable progress has been made in methods for deriving zinc-finger sets for new genomic targets, but approaches to design and selection are still being perfected. An issue that needs more attention is the extent to which available mechanisms of double-strand break repair limit the scope and utility of ZFN-initiated events. The bright prospects for future applications of ZFNs, including human gene therapy, are discussed.

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Year:  2011        PMID: 21828278      PMCID: PMC3176093          DOI: 10.1534/genetics.111.131433

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  89 in total

1.  High-frequency homologous recombination in plants mediated by zinc-finger nucleases.

Authors:  David A Wright; Jeffrey A Townsend; Ronnie Joe Winfrey; Phillip A Irwin; Jyothi Rajagopal; Patricia M Lonosky; Bradford D Hall; Michael D Jondle; Daniel F Voytas
Journal:  Plant J       Date:  2005-11       Impact factor: 6.417

2.  Targeted mutagenesis using zinc-finger nucleases in Arabidopsis.

Authors:  Alan Lloyd; Christopher L Plaisier; Dana Carroll; Gary N Drews
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-26       Impact factor: 11.205

3.  Chimeric restriction enzyme: Gal4 fusion to FokI cleavage domain.

Authors:  Y G Kim; J Smith; M Durgesha; S Chandrasegaran
Journal:  Biol Chem       Date:  1998 Apr-May       Impact factor: 3.915

4.  FokI dimerization is required for DNA cleavage.

Authors:  J Bitinaite; D A Wah; A K Aggarwal; I Schildkraut
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

5.  Highly efficient endogenous human gene correction using designed zinc-finger nucleases.

Authors:  Fyodor D Urnov; Jeffrey C Miller; Ya-Li Lee; Christian M Beausejour; Jeremy M Rock; Sheldon Augustus; Andrew C Jamieson; Matthew H Porteus; Philip D Gregory; Michael C Holmes
Journal:  Nature       Date:  2005-04-03       Impact factor: 49.962

Review 6.  Gene targeting in mice: functional analysis of the mammalian genome for the twenty-first century.

Authors:  Mario R Capecchi
Journal:  Nat Rev Genet       Date:  2005-06       Impact factor: 53.242

7.  Efficient gene targeting in Drosophila with zinc-finger nucleases.

Authors:  Kelly Beumer; Gargi Bhattacharyya; Marina Bibikova; Jonathan K Trautman; Dana Carroll
Journal:  Genetics       Date:  2006-02-01       Impact factor: 4.562

8.  Site-specific gene modification by PNAs conjugated to psoralen.

Authors:  Ki-Hyun Kim; Peter E Nielsen; Peter M Glazer
Journal:  Biochemistry       Date:  2006-01-10       Impact factor: 3.162

9.  Custom zinc-finger nucleases for use in human cells.

Authors:  Stephen Alwin; Maja B Gere; Eva Guhl; Karin Effertz; Carlos F Barbas; David J Segal; Matthew D Weitzman; Toni Cathomen
Journal:  Mol Ther       Date:  2005-10       Impact factor: 11.454

10.  Computational redesign of endonuclease DNA binding and cleavage specificity.

Authors:  Justin Ashworth; James J Havranek; Carlos M Duarte; Django Sussman; Raymond J Monnat; Barry L Stoddard; David Baker
Journal:  Nature       Date:  2006-06-01       Impact factor: 49.962

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  301 in total

Review 1.  Determining the specificities of TALENs, Cas9, and other genome-editing enzymes.

Authors:  Vikram Pattanayak; John P Guilinger; David R Liu
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

2.  The 2012 Novitski Prize: Dana Carroll.

Authors:  Sue Jinks-Robertson
Journal:  Genetics       Date:  2012-06       Impact factor: 4.562

Review 3.  Cardiac-specific inducible and conditional gene targeting in mice.

Authors:  Thomas Doetschman; Mohamad Azhar
Journal:  Circ Res       Date:  2012-05-25       Impact factor: 17.367

4.  5'-Cytosine-phosphoguanine (CpG) methylation impacts the activity of natural and engineered meganucleases.

Authors:  Julien Valton; Fayza Daboussi; Sophie Leduc; Rafael Molina; Pilar Redondo; Rachel Macmaster; Guillermo Montoya; Philippe Duchateau
Journal:  J Biol Chem       Date:  2012-06-27       Impact factor: 5.157

Review 5.  Genome editing: a robust technology for human stem cells.

Authors:  Arun Pandian Chandrasekaran; Minjung Song; Suresh Ramakrishna
Journal:  Cell Mol Life Sci       Date:  2017-04-12       Impact factor: 9.261

Review 6.  CRISPR-Cas systems for editing, regulating and targeting genomes.

Authors:  Jeffry D Sander; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-03-02       Impact factor: 54.908

7.  Novel reporter and deleter mouse strains generated using VCre/VloxP and SCre/SloxP systems, and their system specificity in mice.

Authors:  Yuki Yoshimura; Miyuki Ida-Tanaka; Tsuyoshi Hiramaki; Motohito Goto; Tsutomu Kamisako; Tomoo Eto; Mika Yagoto; Kenji Kawai; Takeshi Takahashi; Manabu Nakayama; Mamoru Ito
Journal:  Transgenic Res       Date:  2018-03-15       Impact factor: 2.788

8.  AAV-mediated gene editing via double-strand break repair.

Authors:  Matthew L Hirsch; R Jude Samulski
Journal:  Methods Mol Biol       Date:  2014

9.  CRISPR/Cas9 edited HSFA6a and HSFA6b of Arabidopsis thaliana offers ABA and osmotic stress insensitivity by modulation of ROS homeostasis.

Authors:  Wang Wenjing; Qingbin Chen; Prashant Kumar Singh; Yuanyuan Huang; Dongli Pei
Journal:  Plant Signal Behav       Date:  2020-09-16

Review 10.  Eradication Strategies for Chronic Hepatitis B Infection.

Authors:  Eleanor M P Wilson; Lydia Tang; Shyam Kottilil
Journal:  Clin Infect Dis       Date:  2016-06-01       Impact factor: 9.079

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