Literature DB >> 22819644

Advances in targeted genome editing.

Pablo Perez-Pinera1, David G Ousterout, Charles A Gersbach.   

Abstract

New technologies have recently emerged that enable targeted editing of genomes in diverse systems. This includes precise manipulation of gene sequences in their natural chromosomal context and addition of transgenes to specific genomic loci. This progress has been facilitated by advances in engineering targeted nucleases with programmable, site-specific DNA-binding domains, including zinc finger proteins and transcription activator-like effectors (TALEs). Recent improvements have enhanced nuclease performance, accelerated nuclease assembly, and lowered the cost of genome editing. These advances are driving new approaches to many areas of biotechnology, including biopharmaceutical production, agriculture, creation of transgenic organisms and cell lines, and studies of genome structure, regulation, and function. Genome editing is also being investigated in preclinical and clinical gene therapies for many diseases.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22819644      PMCID: PMC3424393          DOI: 10.1016/j.cbpa.2012.06.007

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  91 in total

1.  Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architectures.

Authors:  Yannick Doyon; Thuy D Vo; Matthew C Mendel; Shon G Greenberg; Jianbin Wang; Danny F Xia; Jeffrey C Miller; Fyodor D Urnov; Philip D Gregory; Michael C Holmes
Journal:  Nat Methods       Date:  2010-12-05       Impact factor: 28.547

2.  Preassembled zinc-finger arrays for rapid construction of ZFNs.

Authors:  Seokjoong Kim; Mi Jung Lee; Hyojin Kim; Mijin Kang; Jin-Soo Kim
Journal:  Nat Methods       Date:  2011-01       Impact factor: 28.547

3.  Structure-guided reprogramming of serine recombinase DNA sequence specificity.

Authors:  Thomas Gaj; Andrew C Mercer; Charles A Gersbach; Russell M Gordley; Carlos F Barbas
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

4.  An unbiased genome-wide analysis of zinc-finger nuclease specificity.

Authors:  Richard Gabriel; Angelo Lombardo; Anne Arens; Jeffrey C Miller; Pietro Genovese; Christine Kaeppel; Ali Nowrouzi; Cynthia C Bartholomae; Jianbin Wang; Geoffrey Friedman; Michael C Holmes; Philip D Gregory; Hanno Glimm; Manfred Schmidt; Luigi Naldini; Christof von Kalle
Journal:  Nat Biotechnol       Date:  2011-08-07       Impact factor: 54.908

5.  A TALE nuclease architecture for efficient genome editing.

Authors:  Jeffrey C Miller; Siyuan Tan; Guijuan Qiao; Kyle A Barlow; Jianbin Wang; Danny F Xia; Xiangdong Meng; David E Paschon; Elo Leung; Sarah J Hinkley; Gladys P Dulay; Kevin L Hua; Irina Ankoudinova; Gregory J Cost; Fyodor D Urnov; H Steve Zhang; Michael C Holmes; Lei Zhang; Philip D Gregory; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2010-12-22       Impact factor: 54.908

6.  Zinc-finger nuclease-mediated gene correction using single AAV vector transduction and enhancement by Food and Drug Administration-approved drugs.

Authors:  B L Ellis; M L Hirsch; S N Porter; R J Samulski; M H Porteus
Journal:  Gene Ther       Date:  2012-01-19       Impact factor: 5.250

7.  An optimized two-finger archive for ZFN-mediated gene targeting.

Authors:  Ankit Gupta; Ryan G Christensen; Amy L Rayla; Abirami Lakshmanan; Gary D Stormo; Scot A Wolfe
Journal:  Nat Methods       Date:  2012-04-29       Impact factor: 28.547

8.  Targeted gene addition to a predetermined site in the human genome using a ZFN-based nicking enzyme.

Authors:  Jianbin Wang; Geoffrey Friedman; Yannick Doyon; Nathaniel S Wang; Carrie Jiaxin Li; Jeffrey C Miller; Kevin L Hua; Jenny Jiacheng Yan; Joshua E Babiarz; Philip D Gregory; Michael C Holmes
Journal:  Genome Res       Date:  2012-03-20       Impact factor: 9.043

9.  Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA).

Authors:  Jeffry D Sander; Elizabeth J Dahlborg; Mathew J Goodwin; Lindsay Cade; Feng Zhang; Daniel Cifuentes; Shaun J Curtin; Jessica S Blackburn; Stacey Thibodeau-Beganny; Yiping Qi; Christopher J Pierick; Ellen Hoffman; Morgan L Maeder; Cyd Khayter; Deepak Reyon; Drena Dobbs; David M Langenau; Robert M Stupar; Antonio J Giraldez; Daniel F Voytas; Randall T Peterson; Jing-Ruey J Yeh; J Keith Joung
Journal:  Nat Methods       Date:  2010-12-12       Impact factor: 28.547

10.  Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription.

Authors:  Feng Zhang; Le Cong; Simona Lodato; Sriram Kosuri; George M Church; Paola Arlotta
Journal:  Nat Biotechnol       Date:  2011-01-19       Impact factor: 54.908

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  65 in total

1.  In Vivo Zinc Finger Nuclease-mediated Targeted Integration of a Glucose-6-phosphatase Transgene Promotes Survival in Mice With Glycogen Storage Disease Type IA.

Authors:  Dustin J Landau; Elizabeth Drake Brooks; Pablo Perez-Pinera; Hiruni Amarasekara; Adam Mefferd; Songtao Li; Andrew Bird; Charles A Gersbach; Dwight D Koeberl
Journal:  Mol Ther       Date:  2016-02-11       Impact factor: 11.454

Review 2.  Emerging tools for synthetic genome design.

Authors:  Bo-Rahm Lee; Suhyung Cho; Yoseb Song; Sun Chang Kim; Byung-Kwan Cho
Journal:  Mol Cells       Date:  2013-05-02       Impact factor: 5.034

3.  Direct protein delivery to mammalian cells using cell-permeable Cys2-His2 zinc-finger domains.

Authors:  Thomas Gaj; Jia Liu
Journal:  J Vis Exp       Date:  2015-03-25       Impact factor: 1.355

4.  The ethics of genome editing in non-human animals: a systematic review of reasons reported in the academic literature.

Authors:  Nienke de Graeff; Karin R Jongsma; Josephine Johnston; Sarah Hartley; Annelien L Bredenoord
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-05-13       Impact factor: 6.237

Review 5.  To CRISPR and beyond: the evolution of genome editing in stem cells.

Authors:  Kuang-Yui Chen; Paul S Knoepfler
Journal:  Regen Med       Date:  2016-12-01       Impact factor: 3.806

6.  The double-edged sword of CRISPR-Cas systems.

Authors:  Manuela Villion; Sylvain Moineau
Journal:  Cell Res       Date:  2012-09-04       Impact factor: 25.617

7.  RNA-guided genome editing à la carte.

Authors:  Philippe Horvath; Rodolphe Barrangou
Journal:  Cell Res       Date:  2013-03-12       Impact factor: 25.617

8.  Bottom-up approaches in synthetic biology and biomaterials for tissue engineering applications.

Authors:  Mitchell S Weisenberger; Tara L Deans
Journal:  J Ind Microbiol Biotechnol       Date:  2018-03-19       Impact factor: 3.346

Review 9.  CRISPR-based technologies: prokaryotic defense weapons repurposed.

Authors:  Rebecca M Terns; Michael P Terns
Journal:  Trends Genet       Date:  2014-02-18       Impact factor: 11.639

Review 10.  The role of single-cell analyses in understanding cell lineage commitment.

Authors:  Tyler M Gibson; Charles A Gersbach
Journal:  Biotechnol J       Date:  2013-03-21       Impact factor: 4.677

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