Literature DB >> 21443207

Site-specific hydration dynamics in the nonpolar core of a molten globule by dynamic nuclear polarization of water.

Brandon D Armstrong1, Jennifer Choi, Carlos López, Darryl A Wesener, Wayne Hubbell, Silvia Cavagnero, Songi Han.   

Abstract

Water-protein interactions play a direct role in protein folding. The chain collapse that accompanies protein folding involves extrusion of water from the nonpolar core. For many proteins, including apomyoglobin (apoMb), hydrophobic interactions drive an initial collapse to an intermediate state before folding to the final structure. However, the debate continues as to whether the core of the collapsed intermediate state is hydrated and, if so, what the dynamic nature of this water is. A key challenge is that protein hydration dynamics is significantly heterogeneous, yet suitable experimental techniques for measuring hydration dynamics with site-specificity are lacking. Here, we introduce Overhauser dynamic nuclear polarization at 0.35 T via site-specific nitroxide spin labels as a unique tool to probe internal and surface protein hydration dynamics with site-specific resolution in the molten globular, native, and unfolded protein states. The (1)H NMR signal enhancement of water carries information about the local dynamics of the solvent within ∼10 Å of a spin label. EPR is used synergistically to gain insights on local polarity and mobility of the spin-labeled protein. Several buried and solvent-exposed sites of apoMb are examined, each bearing a covalently bound nitroxide spin label. We find that the nonpoloar core of the apoMb molten globule is hydrated with water bearing significant translational dynamics, only 4-6-fold slower than that of bulk water. The hydration dynamics of the native state is heterogeneous, while the acid-unfolded state bears fast-diffusing hydration water. This study provides a high-resolution glimpse at the folding-dependent nature of protein hydration dynamics.

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Year:  2011        PMID: 21443207      PMCID: PMC3095581          DOI: 10.1021/ja111515s

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  79 in total

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Authors:  Samir Kumar Pal; Jorge Peon; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

2.  Structural characterization of a partly folded apomyoglobin intermediate.

Authors:  F M Hughson; P E Wright; R L Baldwin
Journal:  Science       Date:  1990-09-28       Impact factor: 47.728

3.  An extended dynamical hydration shell around proteins.

Authors:  Simon Ebbinghaus; Seung Joong Kim; Matthias Heyden; Xin Yu; Udo Heugen; Martin Gruebele; David M Leitner; Martina Havenith
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-19       Impact factor: 11.205

4.  Hydration water dynamics near biological interfaces.

Authors:  Margaret E Johnson; Cecile Malardier-Jugroot; Rajesh K Murarka; Teresa Head-Gordon
Journal:  J Phys Chem B       Date:  2009-04-02       Impact factor: 2.991

5.  Does the dynamic Stokes shift report on slow protein hydration dynamics?

Authors:  Bertil Halle; Lennart Nilsson
Journal:  J Phys Chem B       Date:  2009-06-18       Impact factor: 2.991

6.  A unified model of protein dynamics.

Authors:  Hans Frauenfelder; Guo Chen; Joel Berendzen; Paul W Fenimore; Helén Jansson; Benjamin H McMahon; Izabela R Stroe; Jan Swenson; Robert D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-27       Impact factor: 11.205

7.  Theory of cooperative transitions in protein molecules. I. Why denaturation of globular protein is a first-order phase transition.

Authors:  E I Shakhnovich; A V Finkelstein
Journal:  Biopolymers       Date:  1989-10       Impact factor: 2.505

8.  Molecular picture of folding of a small alpha/beta protein.

Authors:  F B Sheinerman; C L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

9.  Native and non-native secondary structure and dynamics in the pH 4 intermediate of apomyoglobin.

Authors:  D Eliezer; J Chung; H J Dyson; P E Wright
Journal:  Biochemistry       Date:  2000-03-21       Impact factor: 3.162

10.  Cell water dynamics on multiple time scales.

Authors:  Erik Persson; Bertil Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-24       Impact factor: 11.205

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  32 in total

1.  Protein structural and surface water rearrangement constitute major events in the earliest aggregation stages of tau.

Authors:  Anna Pavlova; Chi-Yuan Cheng; Maia Kinnebrew; John Lew; Frederick W Dahlquist; Songi Han
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-28       Impact factor: 11.205

2.  Hydration dynamics as an intrinsic ruler for refining protein structure at lipid membrane interfaces.

Authors:  Chi-Yuan Cheng; Jobin Varkey; Mark R Ambroso; Ralf Langen; Songi Han
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

3.  Unfolding of a small protein proceeds via dry and wet globules and a solvated transition state.

Authors:  Saswata Sankar Sarkar; Jayant B Udgaonkar; Guruswamy Krishnamoorthy
Journal:  Biophys J       Date:  2013-11-19       Impact factor: 4.033

Review 4.  Sensitivity enhancement in solution NMR: emerging ideas and new frontiers.

Authors:  Jung Ho Lee; Yusuke Okuno; Silvia Cavagnero
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

5.  Structural insight into proteorhodopsin oligomers.

Authors:  Katherine M Stone; Jeda Voska; Maia Kinnebrew; Anna Pavlova; Matthias J N Junk; Songi Han
Journal:  Biophys J       Date:  2013-01-22       Impact factor: 4.033

6.  Mapping molecular flexibility of proteins with site-directed spin labeling: a case study of myoglobin.

Authors:  Carlos J López; Shirley Oga; Wayne L Hubbell
Journal:  Biochemistry       Date:  2012-08-09       Impact factor: 3.162

7.  The dynamics of peptide-water interactions in dialanine: An ultrafast amide I 2D IR and computational spectroscopy study.

Authors:  Chi-Jui Feng; Andrei Tokmakoff
Journal:  J Chem Phys       Date:  2017-08-28       Impact factor: 3.488

8.  Cholesterol enhances surface water diffusion of phospholipid bilayers.

Authors:  Chi-Yuan Cheng; Luuk L C Olijve; Ravinath Kausik; Songi Han
Journal:  J Chem Phys       Date:  2014-12-14       Impact factor: 3.488

9.  Quantitative analysis of molecular transport across liposomal bilayer by J-mediated 13C Overhauser dynamic nuclear polarization.

Authors:  Chi-Yuan Cheng; Olga J G M Goor; Songi Han
Journal:  Anal Chem       Date:  2012-10-23       Impact factor: 6.986

10.  Anomalously Rapid Hydration Water Diffusion Dynamics Near DNA Surfaces.

Authors:  John M Franck; Yuan Ding; Katherine Stone; Peter Z Qin; Songi Han
Journal:  J Am Chem Soc       Date:  2015-09-10       Impact factor: 15.419

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