Literature DB >> 19462949

Does the dynamic Stokes shift report on slow protein hydration dynamics?

Bertil Halle1, Lennart Nilsson.   

Abstract

The time-dependent fluorescence frequency shift of protein-attached probes has a much slower decay than that for the free probe. The decay times, ranging from 10 ps to several nanoseconds, have been attributed to hydration water motions several orders of magnitude slower than those in the hydration shell of small solutes. This interpretation deviates strongly from the prevailing picture of protein hydration dynamics. We argue here that the slow decay in the fluorescence shift can be explained by a ubiquitous solvent polarization mechanism, with no need to invoke slow water motions or a dynamic coupling with protein motions. This mechanism can be qualitatively understood with the aid of a dielectric continuum model. We therefore conclude that the long decay times measured with time-dependent fluorescence spectroscopy contain no information about protein hydration dynamics.

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Year:  2009        PMID: 19462949     DOI: 10.1021/jp9027589

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  16 in total

Review 1.  Time-resolved fluorescence in lipid bilayers: selected applications and advantages over steady state.

Authors:  Mariana Amaro; Radek Šachl; Piotr Jurkiewicz; Ana Coutinho; Manuel Prieto; Martin Hof
Journal:  Biophys J       Date:  2014-12-16       Impact factor: 4.033

2.  Dynamics and hydration explain failed functional transformation in dehalogenase design.

Authors:  Jan Sykora; Jan Brezovsky; Tana Koudelakova; Maryna Lahoda; Andrea Fortova; Tatsiana Chernovets; Radka Chaloupkova; Veronika Stepankova; Zbynek Prokop; Ivana Kuta Smatanova; Martin Hof; Jiri Damborsky
Journal:  Nat Chem Biol       Date:  2014-04-13       Impact factor: 15.040

3.  Site-specific hydration dynamics in the nonpolar core of a molten globule by dynamic nuclear polarization of water.

Authors:  Brandon D Armstrong; Jennifer Choi; Carlos López; Darryl A Wesener; Wayne Hubbell; Silvia Cavagnero; Songi Han
Journal:  J Am Chem Soc       Date:  2011-03-28       Impact factor: 15.419

4.  Hydrogen bond flexibility correlates with Stokes shift in mPlum variants.

Authors:  Patrick Konold; Chola K Regmi; Prem P Chapagain; Bernard S Gerstman; Ralph Jimenez
Journal:  J Phys Chem B       Date:  2014-03-10       Impact factor: 2.991

5.  Picosecond fluorescence dynamics of tryptophan and 5-fluorotryptophan in monellin: slow water-protein relaxation unmasked.

Authors:  Jianhua Xu; Binbin Chen; Patrik Callis; Pedro L Muiño; Henriëtte Rozeboom; Jaap Broos; Dmitri Toptygin; Ludwig Brand; Jay R Knutson
Journal:  J Phys Chem B       Date:  2015-03-04       Impact factor: 2.991

6.  A peptide's perspective of water dynamics.

Authors:  Ayanjeet Ghosh; Robin M Hochstrasser
Journal:  Chem Phys       Date:  2011-08-11       Impact factor: 2.348

7.  Validation of response function construction and probing heterogeneous protein hydration by intrinsic tryptophan.

Authors:  Yangzhong Qin; Chih-Wei Chang; Lijuan Wang; Dongping Zhong
Journal:  J Phys Chem B       Date:  2012-11-02       Impact factor: 2.991

Review 8.  Dynamics of water and ions around DNA: What is so special about them?

Authors:  Him Shweta; Sobhan Sen
Journal:  J Biosci       Date:  2018-07       Impact factor: 1.826

Review 9.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

Review 10.  THE IMS PARADOX: A PERSPECTIVE ON STRUCTURAL ION MOBILITY-MASS SPECTROMETRY.

Authors:  Jacob W McCabe; Michael J Hebert; Mehdi Shirzadeh; Christopher S Mallis; Joanna K Denton; Thomas E Walker; David H Russell
Journal:  Mass Spectrom Rev       Date:  2020-07-01       Impact factor: 10.946

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