Literature DB >> 2597723

Theory of cooperative transitions in protein molecules. I. Why denaturation of globular protein is a first-order phase transition.

E I Shakhnovich, A V Finkelstein.   

Abstract

A theory of equilibrium denaturation of proteins is suggested. According to this theory, a cornerstone of protein denaturation is disruption of tight packing of side chains in protein core. Investigation of this disruption is the object of this paper. It is shown that this disruption is an "all-or-none" transition (independent of how compact is the denatured state of a protein and independent of the protein-solvent interactions) because expansion of a globule must exceed some threshold to release rotational isomerization of side chains. Smaller expansion cannot produce entropy compensation of nonbonded energy loss; this is the origin of a free-energy barrier (transition state) between the native and denatured states. The density of the transition state is so high that the solvent cannot penetrate into protein in this state. The results obtained in this paper make it possible to present in the following paper a general phase diagram of protein molecule in solution.

Mesh:

Year:  1989        PMID: 2597723     DOI: 10.1002/bip.360281003

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  62 in total

Review 1.  Protein compressibility, dynamics, and pressure.

Authors:  D P Kharakoz
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

2.  The major transition state in folding need not involve the immobilization of side chains.

Authors:  R A Staniforth; J L Dean; Q Zhong; E Zerovnik; A R Clarke; J P Waltho
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

3.  A minimal physically realistic protein-like lattice model: designing an energy landscape that ensures all-or-none folding to a unique native state.

Authors:  Piotr Pokarowski; Andrzej Kolinski; Jeffrey Skolnick
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

4.  Interatomic potentials and solvation parameters from protein engineering data for buried residues.

Authors:  Andrei L Lomize; Mikhail Y Reibarkh; Irina D Pogozheva
Journal:  Protein Sci       Date:  2002-08       Impact factor: 6.725

5.  Quantification of helix-helix binding affinities in micelles and lipid bilayers.

Authors:  Andrei L Lomize; I D Pogozheva; H I Mosberg
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

6.  Effects of Hofmeister ions on the α-helical structure of proteins.

Authors:  Alvaro H Crevenna; Nikolaus Naredi-Rainer; Don C Lamb; Roland Wedlich-Söldner; Joachim Dzubiella
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

7.  Reducing the dimensionality of the protein-folding search problem.

Authors:  George D Chellapa; George D Rose
Journal:  Protein Sci       Date:  2012-07-06       Impact factor: 6.725

Review 8.  Protein folding thermodynamics and dynamics: where physics, chemistry, and biology meet.

Authors:  Eugene Shakhnovich
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

9.  Protein folding: then and now.

Authors:  Yiwen Chen; Feng Ding; Huifen Nie; Adrian W Serohijos; Shantanu Sharma; Kyle C Wilcox; Shuangye Yin; Nikolay V Dokholyan
Journal:  Arch Biochem Biophys       Date:  2007-06-08       Impact factor: 4.013

10.  Theory for protein folding cooperativity: helix bundles.

Authors:  Kingshuk Ghosh; K A Dill
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.