Literature DB >> 18436650

Cell water dynamics on multiple time scales.

Erik Persson1, Bertil Halle.   

Abstract

Water-biomolecule interactions have been extensively studied in dilute solutions, crystals, and rehydrated powders, but none of these model systems may capture the behavior of water in the highly organized intracellular milieu. Because of the experimental difficulty of selectively probing the structure and dynamics of water in intact cells, radically different views about the properties of cell water have proliferated. To resolve this long-standing controversy, we have measured the (2)H spin relaxation rate in living bacteria cultured in D(2)O. The relaxation data, acquired in a wide magnetic field range (0.2 mT-12 T) and analyzed in a model-independent way, reveal water dynamics on a wide range of time scales. Contradicting the view that a substantial fraction of cell water is strongly perturbed, we find that approximately 85% of cell water in Escherichia coli and in the extreme halophile Haloarcula marismortui has bulk-like dynamics. The remaining approximately 15% of cell water interacts directly with biomolecular surfaces and is motionally retarded by a factor 15 +/- 3 on average, corresponding to a rotational correlation time of 27 ps. This dynamic perturbation is three times larger than for small monomeric proteins in solution, a difference we attribute to secluded surface hydration sites in supramolecular assemblies. The relaxation data also show that a small fraction ( approximately 0.1%) of cell water exchanges from buried hydration sites on the microsecond time scale, consistent with the current understanding of protein hydration in solutions and crystals.

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Year:  2008        PMID: 18436650      PMCID: PMC2359779          DOI: 10.1073/pnas.0709585105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  Biomolecular hydration: from water dynamics to hydrodynamics.

Authors:  Bertil Halle; Monika Davidovic
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-03       Impact factor: 11.205

Review 2.  Protein hydration dynamics in solution: a critical survey.

Authors:  Bertil Halle
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

3.  Model-free analysis of stretched relaxation dispersions.

Authors:  B Halle; H Jóhannesson; K Venu
Journal:  J Magn Reson       Date:  1998-11       Impact factor: 2.229

4.  Noninvasive measurement of protein concentration.

Authors:  X Jiao; R G Bryant
Journal:  Magn Reson Med       Date:  1996-02       Impact factor: 4.668

5.  19F NMR measurements of the rotational mobility of proteins in vivo.

Authors:  S P Williams; P M Haggie; K M Brindle
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

6.  Diffusive properties of water in Artemia cysts as determined from quasi-elastic neutron scattering spectra.

Authors:  E C Trantham; H E Rorschach; J S Clegg; C F Hazlewood; R M Nicklow; N Wakabayashi
Journal:  Biophys J       Date:  1984-05       Impact factor: 4.033

7.  Hydrogen exchange and protein hydration: the deuteron spin relaxation dispersions of bovine pancreatic trypsin inhibitor and ubiquitin.

Authors:  V P Denisov; B Halle
Journal:  J Mol Biol       Date:  1995-02-03       Impact factor: 5.469

8.  Tumor detection by nuclear magnetic resonance.

Authors:  R Damadian
Journal:  Science       Date:  1971-03-19       Impact factor: 47.728

9.  Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo.

Authors:  S Cayley; B A Lewis; H J Guttman; M T Record
Journal:  J Mol Biol       Date:  1991-11-20       Impact factor: 5.469

10.  Low viscosity in the aqueous domain of cell cytoplasm measured by picosecond polarization microfluorimetry.

Authors:  K Fushimi; A S Verkman
Journal:  J Cell Biol       Date:  1991-02       Impact factor: 10.539

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  41 in total

1.  Water-exclusion and liquid-structure forces in implicit solvation.

Authors:  Sergio A Hassan; Peter J Steinbach
Journal:  J Phys Chem B       Date:  2011-11-15       Impact factor: 2.991

2.  Mobility of core water in Bacillus subtilis spores by 2H NMR.

Authors:  Shuji Kaieda; Barbara Setlow; Peter Setlow; Bertil Halle
Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

Review 3.  Atomic-scale dynamics inside living cells explored by neutron scattering.

Authors:  Marion Jasnin
Journal:  J R Soc Interface       Date:  2009-07-08       Impact factor: 4.118

4.  Dynamics at the protein-water interface from 17O spin relaxation in deeply supercooled solutions.

Authors:  Carlos Mattea; Johan Qvist; Bertil Halle
Journal:  Biophys J       Date:  2008-06-27       Impact factor: 4.033

5.  The physical state of water in bacterial spores.

Authors:  Erik P Sunde; Peter Setlow; Lars Hederstedt; Bertil Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-05       Impact factor: 11.205

Review 6.  From water and ions to crowded biomacromolecules: in vivo structuring of a prokaryotic cell.

Authors:  Jan Spitzer
Journal:  Microbiol Mol Biol Rev       Date:  2011-09       Impact factor: 11.056

Review 7.  Interaction proteomics by using in-cell NMR spectroscopy.

Authors:  Leonard Breindel; David S Burz; Alexander Shekhtman
Journal:  J Proteomics       Date:  2018-02-08       Impact factor: 4.044

8.  Water and backbone dynamics in a hydrated protein.

Authors:  Galina Diakova; Yanina A Goddard; Jean-Pierre Korb; Robert G Bryant
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

9.  Protein (19)F NMR in Escherichia coli.

Authors:  Conggang Li; Gui-Fang Wang; Yaqiang Wang; Rachel Creager-Allen; Evan A Lutz; Heidi Scronce; Kristin M Slade; Rebecca A S Ruf; Ryan A Mehl; Gary J Pielak
Journal:  J Am Chem Soc       Date:  2010-01-13       Impact factor: 15.419

10.  Profiling of dynamics in protein-lipid-water systems: a time-resolved fluorescence study of a model membrane protein with the label BADAN at specific membrane depths.

Authors:  Rob B M Koehorst; Sergey Laptenok; Bart van Oort; Arie van Hoek; Ruud B Spruijt; Ivo H M van Stokkum; Herbert van Amerongen; Marcus A Hemminga
Journal:  Eur Biophys J       Date:  2009-09-16       Impact factor: 1.733

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