Literature DB >> 20880988

Setting the stage: the history, chemistry, and geobiology behind RNA.

Steven A Benner1, Hyo-Joong Kim, Zunyi Yang.   

Abstract

No community-accepted scientific methods are available today to guide studies on what role RNA played in the origin and early evolution of life on Earth. Further, a definition-theory for life is needed to develop hypotheses relating to the "RNA First" model for the origin of life. Four approaches are currently at various stages of development of such a definition-theory to guide these studies. These are (a) paleogenetics, in which inferences about the structure of past life are drawn from the structure of present life; (b) prebiotic chemistry, in which hypotheses with experimental support are sought that get RNA from organic and inorganic species possibly present on early Earth; (c) exploration, hoping to encounter life independent of terran life, which might contain RNA; and (d) synthetic biology, in which laboratories attempt to reproduce biological behavior with unnatural chemical systems.

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Year:  2012        PMID: 20880988      PMCID: PMC3249627          DOI: 10.1101/cshperspect.a003541

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  59 in total

Review 1.  A new biology for a new century.

Authors:  Carl R Woese
Journal:  Microbiol Mol Biol Rev       Date:  2004-06       Impact factor: 11.056

Review 2.  Universality in intermediary metabolism.

Authors:  Eric Smith; Harold J Morowitz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-30       Impact factor: 11.205

Review 3.  Comparative genomics, minimal gene-sets and the last universal common ancestor.

Authors:  Eugene V Koonin
Journal:  Nat Rev Microbiol       Date:  2003-11       Impact factor: 60.633

4.  A third base pair for the polymerase chain reaction: inserting isoC and isoG.

Authors:  Scott C Johnson; Christopher B Sherrill; David J Marshall; Michael J Moser; James R Prudent
Journal:  Nucleic Acids Res       Date:  2004-03-29       Impact factor: 16.971

5.  Coenzymes as fossils of an earlier metabolic state.

Authors:  H B White
Journal:  J Mol Evol       Date:  1976-03-29       Impact factor: 2.395

6.  Three-dimensional tertiary structure of yeast phenylalanine transfer RNA.

Authors:  S H Kim; F L Suddath; G J Quigley; A McPherson; J L Sussman; A H Wang; N C Seeman; A Rich
Journal:  Science       Date:  1974-08-02       Impact factor: 47.728

7.  The origin of the genetic code.

Authors:  F H Crick
Journal:  J Mol Biol       Date:  1968-12       Impact factor: 5.469

Review 8.  Understanding nucleic acids using synthetic chemistry.

Authors:  Steven A Benner
Journal:  Acc Chem Res       Date:  2004-10       Impact factor: 22.384

9.  Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.

Authors:  Matthew W Powner; Béatrice Gerland; John D Sutherland
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

10.  PCR amplification of DNA containing non-standard base pairs by variants of reverse transcriptase from Human Immunodeficiency Virus-1.

Authors:  A Michael Sismour; Stefan Lutz; Jeong-Ho Park; Michael J Lutz; Paul L Boyer; Stephen H Hughes; Steven A Benner
Journal:  Nucleic Acids Res       Date:  2004-02-02       Impact factor: 16.971

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  15 in total

1.  Use of a coenzyme by the glmS ribozyme-riboswitch suggests primordial expansion of RNA chemistry by small molecules.

Authors:  Adrian R Ferré-D'Amaré
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

Review 2.  Getting past the RNA world: the initial Darwinian ancestor.

Authors:  Michael Yarus
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-04-01       Impact factor: 10.005

3.  The RNA worlds in context.

Authors:  Thomas R Cech
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-07-01       Impact factor: 10.005

4.  Autocatalytic Sets and RNA Secondary Structure.

Authors:  Wim Hordijk
Journal:  J Mol Evol       Date:  2017-04-04       Impact factor: 2.395

5.  Fixation and accumulation of thermotolerant catalytic competence of a pair of ligase ribozymes through complex formation and cross ligation.

Authors:  Nana Isomoto; Yuri Maeda; Takahiro Tanaka; Hiroyuki Furuta; Yoshiya Ikawa
Journal:  J Mol Evol       Date:  2013-01-04       Impact factor: 2.395

6.  On the Plausibility of Pseudosugar Formation in Cometary Ices and Oxygen-rich Tholins.

Authors:  Nieves Lavado; Martín Ávalos; Reyes Babiano; Pedro Cintas; Mark E Light; José Luis Jiménez; Juan C Palacios
Journal:  Orig Life Evol Biosph       Date:  2015-10-01       Impact factor: 1.950

7.  On the Origin of the Canonical Nucleobases: An Assessment of Selection Pressures across Chemical and Early Biological Evolution.

Authors:  Andro C Rios; Yitzhak Tor
Journal:  Isr J Chem       Date:  2013-06       Impact factor: 3.333

8.  Resurrection of an ancestral 5S rRNA.

Authors:  Qing Lu; George E Fox
Journal:  BMC Evol Biol       Date:  2011-07-22       Impact factor: 3.260

9.  An Interpretation of the Ancestral Codon from Miller's Amino Acids and Nucleotide Correlations in Modern Coding Sequences.

Authors:  Nicolas Carels; Miguel Ponce de Leon
Journal:  Bioinform Biol Insights       Date:  2015-04-15

10.  The RNA world hypothesis: the worst theory of the early evolution of life (except for all the others)(a).

Authors:  Harold S Bernhardt
Journal:  Biol Direct       Date:  2012-07-13       Impact factor: 4.540

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