Literature DB >> 20534712

In vivo RNAi: today and tomorrow.

Norbert Perrimon1, Jian-Quan Ni, Lizabeth Perkins.   

Abstract

RNA interference (RNAi) provides a powerful reverse genetics approach to analyze gene functions both in tissue culture and in vivo. Because of its widespread applicability and effectiveness it has become an essential part of the tool box kits of model organisms such as Caenorhabditis elegans, Drosophila, and the mouse. In addition, the use of RNAi in animals in which genetic tools are either poorly developed or nonexistent enables a myriad of fundamental questions to be asked. Here, we review the methods and applications of in vivo RNAi to characterize gene functions in model organisms and discuss their impact to the study of developmental as well as evolutionary questions. Further, we discuss the applications of RNAi technologies to crop improvement, pest control and RNAi therapeutics, thus providing an appreciation of the potential for phenomenal applications of RNAi to agriculture and medicine.

Entities:  

Mesh:

Year:  2010        PMID: 20534712      PMCID: PMC2908776          DOI: 10.1101/cshperspect.a003640

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  89 in total

1.  Double-stranded RNA induces specific developmental defects in zebrafish embryos.

Authors:  A Wargelius; S Ellingsen; A Fjose
Journal:  Biochem Biophys Res Commun       Date:  1999-09-16       Impact factor: 3.575

2.  Rapid construction of Drosophila RNAi transgenes using pRISE, a P-element-mediated transformation vector exploiting an in vitro recombination system.

Authors:  Takefumi Kondo; Sachi Inagaki; Kunio Yasuda; Yuji Kageyama
Journal:  Genes Genet Syst       Date:  2006-04       Impact factor: 1.517

3.  A Drosophila resource of transgenic RNAi lines for neurogenetics.

Authors:  Jian-Quan Ni; Lu-Ping Liu; Richard Binari; Robert Hardy; Hye-Seok Shim; Amanda Cavallaro; Matthew Booker; Barret D Pfeiffer; Michele Markstein; Hui Wang; Christians Villalta; Todd R Laverty; Lizabeth A Perkins; Norbert Perrimon
Journal:  Genetics       Date:  2009-06-01       Impact factor: 4.562

Review 4.  Beyond silencing--engineering applications of RNA interference and antisense technology for altering cellular phenotype.

Authors:  Colin G Hebert; James J Valdes; William E Bentley
Journal:  Curr Opin Biotechnol       Date:  2008-09-25       Impact factor: 9.740

5.  Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans.

Authors:  B Sönnichsen; L B Koski; A Walsh; P Marschall; B Neumann; M Brehm; A-M Alleaume; J Artelt; P Bettencourt; E Cassin; M Hewitson; C Holz; M Khan; S Lazik; C Martin; B Nitzsche; M Ruer; J Stamford; M Winzi; R Heinkel; M Röder; J Finell; H Häntsch; S J M Jones; M Jones; F Piano; K C Gunsalus; K Oegema; P Gönczy; A Coulson; A A Hyman; C J Echeverri
Journal:  Nature       Date:  2005-03-24       Impact factor: 49.962

6.  Transport of dsRNA into cells by the transmembrane protein SID-1.

Authors:  Evan H Feinberg; Craig P Hunter
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

7.  Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory genes.

Authors:  Kaveh Ashrafi; Francesca Y Chang; Jennifer L Watts; Andrew G Fraser; Ravi S Kamath; Julie Ahringer; Gary Ruvkun
Journal:  Nature       Date:  2003-01-16       Impact factor: 49.962

8.  Cross-species RNAi rescue platform in Drosophila melanogaster.

Authors:  Shu Kondo; Matthew Booker; Norbert Perrimon
Journal:  Genetics       Date:  2009-08-31       Impact factor: 4.562

9.  Exploiting position effects and the gypsy retrovirus insulator to engineer precisely expressed transgenes.

Authors:  Michele Markstein; Chrysoula Pitsouli; Christians Villalta; Susan E Celniker; Norbert Perrimon
Journal:  Nat Genet       Date:  2008-03-02       Impact factor: 38.330

10.  Targeted gene expression as a means of altering cell fates and generating dominant phenotypes.

Authors:  A H Brand; N Perrimon
Journal:  Development       Date:  1993-06       Impact factor: 6.868

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  73 in total

1.  "Vacuum-assisted staining": a simple and efficient method for screening in Drosophila.

Authors:  Nicola Berns; Innokenty Woichansky; Nadine Kraft; Ulrike Hüsken; Matthias Carl; Veit Riechmann
Journal:  Dev Genes Evol       Date:  2012-02-26       Impact factor: 0.900

2.  Efficient shRNA-mediated inhibition of gene expression in zebrafish.

Authors:  Gianluca De Rienzo; Jennifer H Gutzman; Hazel Sive
Journal:  Zebrafish       Date:  2012-07-12       Impact factor: 1.985

Review 3.  RNAi screening: new approaches, understandings, and organisms.

Authors:  Stephanie E Mohr; Norbert Perrimon
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-09-22       Impact factor: 9.957

4.  The Transgenic RNAi Project at Harvard Medical School: Resources and Validation.

Authors:  Lizabeth A Perkins; Laura Holderbaum; Rong Tao; Yanhui Hu; Richelle Sopko; Kim McCall; Donghui Yang-Zhou; Ian Flockhart; Richard Binari; Hye-Seok Shim; Audrey Miller; Amy Housden; Marianna Foos; Sakara Randkelv; Colleen Kelley; Pema Namgyal; Christians Villalta; Lu-Ping Liu; Xia Jiang; Qiao Huan-Huan; Xia Wang; Asao Fujiyama; Atsushi Toyoda; Kathleen Ayers; Allison Blum; Benjamin Czech; Ralph Neumuller; Dong Yan; Amanda Cavallaro; Karen Hibbard; Don Hall; Lynn Cooley; Gregory J Hannon; Ruth Lehmann; Annette Parks; Stephanie E Mohr; Ryu Ueda; Shu Kondo; Jian-Quan Ni; Norbert Perrimon
Journal:  Genetics       Date:  2015-08-28       Impact factor: 4.562

5.  Suppression of Ptf1a activity induces acinar-to-endocrine conversion.

Authors:  Daniel Hesselson; Ryan M Anderson; Didier Y R Stainier
Journal:  Curr Biol       Date:  2011-04-14       Impact factor: 10.834

Review 6.  Drosophila RNAi screening in a postgenomic world.

Authors:  Chris Bakal
Journal:  Brief Funct Genomics       Date:  2011-07-12       Impact factor: 4.241

7.  UP-TORR: online tool for accurate and Up-to-Date annotation of RNAi Reagents.

Authors:  Yanhui Hu; Charles Roesel; Ian Flockhart; Lizabeth Perkins; Norbert Perrimon; Stephanie E Mohr
Journal:  Genetics       Date:  2013-06-21       Impact factor: 4.562

Review 8.  Resources for functional genomics studies in Drosophila melanogaster.

Authors:  Stephanie E Mohr; Yanhui Hu; Kevin Kim; Benjamin E Housden; Norbert Perrimon
Journal:  Genetics       Date:  2014-03-20       Impact factor: 4.562

9.  The prospects for designer single-stranded RNA-binding proteins.

Authors:  Joel P Mackay; Josep Font; David J Segal
Journal:  Nat Struct Mol Biol       Date:  2011-02-27       Impact factor: 15.369

10.  The RNA worlds in context.

Authors:  Thomas R Cech
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-07-01       Impact factor: 10.005

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