Literature DB >> 21361320

Spin diffusion driven by R-symmetry sequences: applications to homonuclear correlation spectroscopy in MAS NMR of biological and organic solids.

Guangjin Hou1, Si Yan, Shangjin Sun, Yun Han, In-Ja L Byeon, Jinwoo Ahn, Jason Concel, Ago Samoson, Angela M Gronenborn, Tatyana Polenova.   

Abstract

We present a family of homonuclear (13)C-(13)C magic angle spinning spin diffusion experiments, based on R2(n)(v) (n = 1 and 2, v = 1 and 2) symmetry sequences. These experiments are well suited for (13)C-(13)C correlation spectroscopy in biological and organic systems and are especially advantageous at very fast MAS conditions, where conventional PDSD and DARR experiments fail. At very fast MAS frequencies the R2(1)(1), R2(2)(1), and R2(2)(2) sequences result in excellent quality correlation spectra both in model compounds and in proteins. Under these conditions, individual R2(n)(v) display different polarization transfer efficiency dependencies on isotropic chemical shift differences: R2(2)(1) recouples efficiently both small and large chemical shift differences (in proteins these correspond to aliphatic-to-aliphatic and carbonyl-to-aliphatic correlations, respectively), while R2(1)(1) and R2(2)(2) exhibit the maximum recoupling efficiency for the aliphatic-to-aliphatic or carbonyl-to-aliphatic correlations, respectively. At moderate MAS frequencies (10-20 kHz), all R2(n)(v) sequences introduced in this work display similar transfer efficiencies, and their performance is very similar to that of PDSD and DARR. Polarization transfer dynamics and chemical shift dependencies of these R2-driven spin diffusion (RDSD) schemes are experimentally evaluated and investigated by numerical simulations for [U-(13)C,(15)N]-alanine and the [U-(13)C,(15)N] N-formyl-Met-Leu-Phe (MLF) tripeptide. Further applications of this approach are illustrated for several proteins: spherical assemblies of HIV-1 U-(13)C,(15)N CA protein, U-(13)C,(15)N-enriched dynein light chain DLC8, and sparsely (13)C/uniformly (15)N enriched CAP-Gly domain of dynactin. Due to the excellent performance and ease of implementation, the presented R2(n)(v) symmetry sequences are expected to be of wide applicability in studies of proteins and protein assemblies as well as other organic solids by MAS NMR spectroscopy.

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Year:  2011        PMID: 21361320      PMCID: PMC3148607          DOI: 10.1021/ja108650x

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  59 in total

1.  Low-power high-resolution solid-state NMR of peptides and proteins.

Authors:  Matthias Ernst; Marcel A Meier; Tiit Tuherm; Ago Samoson; Beat H Meier
Journal:  J Am Chem Soc       Date:  2004-04-21       Impact factor: 15.419

2.  Magic angle spinning solid-state NMR spectroscopy for structural studies of protein interfaces. resonance assignments of differentially enriched Escherichia coli thioredoxin reassembled by fragment complementation.

Authors:  Dabeiba Marulanda; Maria Luisa Tasayco; Ann McDermott; Marcela Cataldi; Vilma Arriaran; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2004-12-22       Impact factor: 15.419

3.  High-resolution solid-state NMR spectroscopy of the prion protein HET-s in its amyloid conformation.

Authors:  Ansgar B Siemer; Christiane Ritter; Matthias Ernst; Roland Riek; Beat H Meier
Journal:  Angew Chem Int Ed Engl       Date:  2005-04-15       Impact factor: 15.336

4.  Proton assisted insensitive nuclei cross polarization.

Authors:  Józef R Lewandowski; Gaël De Paëpe; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2007-01-31       Impact factor: 15.419

5.  Solid-state protein-structure determination with proton-detected triple-resonance 3D magic-angle-spinning NMR spectroscopy.

Authors:  Donghua H Zhou; John J Shea; Andrew J Nieuwkoop; W Trent Franks; Benjamin J Wylie; Charles Mullen; Dennis Sandoz; Chad M Rienstra
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

6.  Solid-state and solution NMR studies of the CAP-Gly domain of mammalian dynactin and its interaction with microtubules.

Authors:  Shangjin Sun; Amanda Siglin; John C Williams; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

7.  Broadband carbon-13 correlation spectra of microcrystalline proteins in very high magnetic fields.

Authors:  Markus Weingarth; Geoffrey Bodenhausen; Piotr Tekely
Journal:  J Am Chem Soc       Date:  2009-10-07       Impact factor: 15.419

8.  Broadband dipolar recoupling for magnetization transfer in solid-state NMR correlation spectroscopy.

Authors:  Luminita Duma; Daniel Abergel; Fabien Ferrage; Philippe Pelupessy; Piotr Tekely; Geoffrey Bodenhausen
Journal:  Chemphyschem       Date:  2008-06-02       Impact factor: 3.102

9.  J-Based 3D sidechain correlation in solid-state proteins.

Authors:  Ye Tian; Lingling Chen; Dimitri Niks; J Michael Kaiser; Jinfeng Lai; Chad M Rienstra; Michael F Dunn; Leonard J Mueller
Journal:  Phys Chem Chem Phys       Date:  2009-07-20       Impact factor: 3.676

10.  Backbone conformational constraints in a microcrystalline U-15N-labeled protein by 3D dipolar-shift solid-state NMR spectroscopy.

Authors:  W Trent Franks; Benjamin J Wylie; Sara A Stellfox; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2006-03-15       Impact factor: 15.419

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  29 in total

1.  Enhanced sensitivity by nonuniform sampling enables multidimensional MAS NMR spectroscopy of protein assemblies.

Authors:  Sivakumar Paramasivam; Christopher L Suiter; Guangjin Hou; Shangjin Sun; Melissa Palmer; Jeffrey C Hoch; David Rovnyak; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-06-18       Impact factor: 2.991

2.  Determination of Long-Range Distances by Fast Magic-Angle-Spinning Radiofrequency-Driven 19F-19F Dipolar Recoupling NMR.

Authors:  Matthias Roos; Venkata S Mandala; Mei Hong
Journal:  J Phys Chem B       Date:  2018-09-27       Impact factor: 2.991

Review 3.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Authors:  Caitlin M Quinn; Tatyana Polenova
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

4.  Motions on the millisecond time scale and multiple conformations of HIV-1 capsid protein: implications for structural polymorphism of CA assemblies.

Authors:  In-Ja L Byeon; Guangjin Hou; Yun Han; Christopher L Suiter; Jinwoo Ahn; Jinwon Jung; Chang-Hyeock Byeon; Angela M Gronenborn; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2012-04-02       Impact factor: 15.419

5.  Beyond Structural Biology to Functional Biology: Solid-State NMR Experiments and Strategies for Understanding the M2 Proton Channel Conductance.

Authors:  Huajun Qin; Yimin Miao; Timothy A Cross; Riqiang Fu
Journal:  J Phys Chem B       Date:  2017-05-02       Impact factor: 2.991

6.  Dual-band selective double cross polarization for heteronuclear polarization transfer between dilute spins in solid-state MAS NMR.

Authors:  Zhengfeng Zhang; Yimin Miao; Xiaoli Liu; Jun Yang; Conggang Li; Feng Deng; Riqiang Fu
Journal:  J Magn Reson       Date:  2012-03-05       Impact factor: 2.229

7.  Recoupling of chemical shift anisotropy by R-symmetry sequences in magic angle spinning NMR spectroscopy.

Authors:  Guangjin Hou; In-Ja L Byeon; Jinwoo Ahn; Angela M Gronenborn; Tatyana Polenova
Journal:  J Chem Phys       Date:  2012-10-07       Impact factor: 3.488

8.  3D ¹⁵N/¹⁵N/¹H chemical shift correlation experiment utilizing an RFDR-based ¹H/¹H mixing period at 100 kHz MAS.

Authors:  Yusuke Nishiyama; Michal Malon; Yuji Ishii; Ayyalusamy Ramamoorthy
Journal:  J Magn Reson       Date:  2014-04-19       Impact factor: 2.229

9.  A time-saving strategy for MAS NMR spectroscopy by combining nonuniform sampling and paramagnetic relaxation assisted condensed data collection.

Authors:  Shangjin Sun; Si Yan; Changmiao Guo; Mingyue Li; Jeffrey C Hoch; John C Williams; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-11-12       Impact factor: 2.991

Review 10.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

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