Literature DB >> 21333526

Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy.

Nikolaus Grigorieff1, Stephen C Harrison.   

Abstract

Nine different near-atomic resolution structures of icosahedral viruses, determined by electron cryo-microscopy and published between early 2008 and late 2010, fulfil predictions made 15 years ago that single-particle cryo-EM techniques could visualize molecular detail at 3-4Å resolution. This review summarizes technical developments, both in instrumentation and in computation, that have led to the new structures, which advance our understanding of virus assembly and cell entry.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID： 21333526      PMCID： PMC3088881          DOI： 10.1016/j.sbi.2011.01.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN： 0959-440X            Impact factor:   6.809


  63 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Topologically linked protein rings in the bacteriophage HK97 capsid.

Authors:  W R Wikoff; L Liljas; R L Duda; H Tsuruta; R W Hendrix; J E Johnson
Journal:  Science       Date:  2000-09-22       Impact factor: 47.728

3.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

4.  FREALIGN: high-resolution refinement of single particle structures.

Authors:  Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2006-06-02       Impact factor: 2.867

5.  An improved holey carbon film for cryo-electron microscopy.

Authors:  Joel Quispe; John Damiano; Stephen E Mick; David P Nackashi; Denis Fellmann; Teddy G Ajero; Bridget Carragher; Clinton S Potter
Journal:  Microsc Microanal       Date:  2007-10       Impact factor: 4.127

6.  The atomic structure of the bluetongue virus core.

Authors:  J M Grimes; J N Burroughs; P Gouet; J M Diprose; R Malby; S Ziéntara; P P Mertens; D I Stuart
Journal:  Nature       Date:  1998-10-01       Impact factor: 49.962

7.  Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy.

Authors:  J F Conway; N Cheng; A Zlotnick; P T Wingfield; S J Stahl; A C Steven
Journal:  Nature       Date:  1997-03-06       Impact factor: 49.962

8.  Early steps in reovirus infection are associated with dramatic changes in supramolecular structure and protein conformation: analysis of virions and subviral particles by cryoelectron microscopy and image reconstruction.

Authors:  K A Dryden; G Wang; M Yeager; M L Nibert; K M Coombs; D B Furlong; B N Fields; T S Baker
Journal:  J Cell Biol       Date:  1993-09       Impact factor: 10.539

9.  Design of an electron microscope phase plate using a focused continuous-wave laser.

Authors:  H Müller; Jian Jin; R Danev; J Spence; H Padmore; R M Glaeser
Journal:  New J Phys       Date:  2010-07       Impact factor: 3.729

10.  Cryomesh: a new substrate for cryo-electron microscopy.

Authors:  Craig Yoshioka; Bridget Carragher; Clinton S Potter
Journal:  Microsc Microanal       Date:  2010-02       Impact factor: 4.127
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  79 in total

1.  Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy.

Authors:  Anna-Clare Milazzo; Anchi Cheng; Arne Moeller; Dmitry Lyumkis; Erica Jacovetty; James Polukas; Mark H Ellisman; Nguyen-Huu Xuong; Bridget Carragher; Clinton S Potter
Journal:  J Struct Biol       Date:  2011-09-10       Impact factor: 2.867

2.  Constructing and validating initial Cα models from subnanometer resolution density maps with pathwalking.

Authors:  Mariah R Baker; Ian Rees; Steven J Ludtke; Wah Chiu; Matthew L Baker
Journal:  Structure       Date:  2012-03-07       Impact factor: 5.006

3.  Visualizing proteins and macromolecular complexes by negative stain EM: from grid preparation to image acquisition.

Authors:  David S Booth; Agustin Avila-Sakar; Yifan Cheng
Journal:  J Vis Exp       Date:  2011-12-22       Impact factor: 1.355

4.  Celebrating structural biology.

Authors: 
Journal:  Nat Struct Mol Biol       Date:  2011-12-05       Impact factor: 15.369

Review 5.  Lessons learned from successful human vaccines: Delineating key epitopes by dissecting the capsid proteins.

Authors:  Xiao Zhang; Lu Xin; Shaowei Li; Mujin Fang; Jun Zhang; Ningshao Xia; Qinjian Zhao
Journal:  Hum Vaccin Immunother       Date:  2015       Impact factor: 3.452

Review 6.  Single particle electron cryo-microscopy of a mammalian ion channel.

Authors:  Maofu Liao; Erhu Cao; David Julius; Yifan Cheng
Journal:  Curr Opin Struct Biol       Date:  2014-03-25       Impact factor: 6.809

7.  Direct electron detection yields cryo-EM reconstructions at resolutions beyond 3/4 Nyquist frequency.

Authors:  Benjamin E Bammes; Ryan H Rochat; Joanita Jakana; Dong-Hua Chen; Wah Chiu
Journal:  J Struct Biol       Date:  2012-01-21       Impact factor: 2.867

8.  Stroboscopic imaging of macromolecular complexes.

Authors:  Robert M Glaeser
Journal:  Nat Methods       Date:  2013-06       Impact factor: 28.547

Review 9.  Invited review article: Methods for imaging weak-phase objects in electron microscopy.

Authors:  Robert M Glaeser
Journal:  Rev Sci Instrum       Date:  2013-11       Impact factor: 1.523

10.  A graph theory method for determination of cryo-EM image focuses.

Authors:  Wen Jiang; Fei Guo; Zheng Liu
Journal:  J Struct Biol       Date:  2012-07-27       Impact factor: 2.867
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