Literature DB >> 24681231

Single particle electron cryo-microscopy of a mammalian ion channel.

Maofu Liao1, Erhu Cao2, David Julius3, Yifan Cheng4.   

Abstract

The transient receptor potential (TRP) ion channel family is large and functionally diverse, second only to potassium channels. Despite their prominence within the animal kingdom, TRP channels have resisted crystallization and structural determination for many years. This barrier was recently broken when the three-dimensional structure of the vanilloid receptor 1 (TRPV1) was determined by single particle electron cryo-microscopy (cryo-EM). Moreover, this is the first example in which the near atomic resolution structure of an integral membrane protein was elucidated by this technique and in a manner not requiring crystals, demonstrating the transformative power of single particle cryo-EM for revealing high-resolution structures of integral membrane proteins, particularly those of mammalian origin. Here we summarize technical advances, in both biochemistry and cryo-EM, that led to this major breakthrough.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24681231      PMCID: PMC4176607          DOI: 10.1016/j.sbi.2014.02.005

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  38 in total

1.  Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase.

Authors:  Wilson C Y Lau; John L Rubinstein
Journal:  Nature       Date:  2011-12-18       Impact factor: 49.962

2.  Automated electron-density sampling reveals widespread conformational polymorphism in proteins.

Authors:  P Therese Lang; Ho-Leung Ng; James S Fraser; Jacob E Corn; Nathaniel Echols; Mark Sales; James M Holton; Tom Alber
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

3.  Amphipols from A to Z.

Authors:  J-L Popot; T Althoff; D Bagnard; J-L Banères; P Bazzacco; E Billon-Denis; L J Catoire; P Champeil; D Charvolin; M J Cocco; G Crémel; T Dahmane; L M de la Maza; C Ebel; F Gabel; F Giusti; Y Gohon; E Goormaghtigh; E Guittet; J H Kleinschmidt; W Kühlbrandt; C Le Bon; K L Martinez; M Picard; B Pucci; J N Sachs; C Tribet; C van Heijenoort; F Wien; F Zito; M Zoonens
Journal:  Annu Rev Biophys       Date:  2011       Impact factor: 12.981

Review 4.  Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy.

Authors:  Nikolaus Grigorieff; Stephen C Harrison
Journal:  Curr Opin Struct Biol       Date:  2011-02-18       Impact factor: 6.809

5.  Refinement of protein structures into low-resolution density maps using rosetta.

Authors:  Frank DiMaio; Michael D Tyka; Matthew L Baker; Wah Chiu; David Baker
Journal:  J Mol Biol       Date:  2009-07-08       Impact factor: 5.469

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Images of paraffin monolayer crystals with perfect contrast: minimization of beam-induced specimen motion.

Authors:  R M Glaeser; G McMullan; A R Faruqi; R Henderson
Journal:  Ultramicroscopy       Date:  2010-10-26       Impact factor: 2.689

8.  Cryo-EM structure of the ribosome-SecYE complex in the membrane environment.

Authors:  Jens Frauenfeld; James Gumbart; Eli O van der Sluis; Soledad Funes; Marco Gartmann; Birgitta Beatrix; Thorsten Mielke; Otto Berninghausen; Thomas Becker; Klaus Schulten; Roland Beckmann
Journal:  Nat Struct Mol Biol       Date:  2011-04-17       Impact factor: 15.369

9.  Arrangement of electron transport chain components in bovine mitochondrial supercomplex I1III2IV1.

Authors:  Thorsten Althoff; Deryck J Mills; Jean-Luc Popot; Werner Kühlbrandt
Journal:  EMBO J       Date:  2011-09-09       Impact factor: 11.598

10.  Structure of a tetrameric MscL in an expanded intermediate state.

Authors:  Zhenfeng Liu; Chris S Gandhi; Douglas C Rees
Journal:  Nature       Date:  2009-08-23       Impact factor: 49.962

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  38 in total

Review 1.  Structure of IP3R channel: high-resolution insights from cryo-EM.

Authors:  Mariah R Baker; Guizhen Fan; Irina I Serysheva
Journal:  Curr Opin Struct Biol       Date:  2017-06-12       Impact factor: 6.809

2.  Probing Polytopic Membrane Protein-Substrate Interactions by Luminescence Resonance Energy Transfer.

Authors:  Monika Musial-Siwek; Marcie B Jaffee; Barbara Imperiali
Journal:  J Am Chem Soc       Date:  2016-03-14       Impact factor: 15.419

3.  Isolation of Escherichia coli mannitol permease, EIImtl, trapped in amphipol A8-35 and fluorescein-labeled A8-35.

Authors:  Milena Opačić; Fabrice Giusti; Jean-Luc Popot; Jaap Broos
Journal:  J Membr Biol       Date:  2014-06-22       Impact factor: 1.843

4.  Single-particle cryo-EM of the ryanodine receptor channel in an aqueous environment.

Authors:  Mariah R Baker; Guizhen Fan; Irina I Serysheva
Journal:  Eur J Transl Myol       Date:  2015

5.  Muscling in on the ryanodine receptor.

Authors:  Ivana Y Kuo; Barbara E Ehrlich
Journal:  Nat Struct Mol Biol       Date:  2015-02       Impact factor: 15.369

Review 6.  Transient Receptor Potential Channels and Endothelial Cell Calcium Signaling.

Authors:  Pratish Thakore; Scott Earley
Journal:  Compr Physiol       Date:  2019-06-12       Impact factor: 9.090

Review 7.  New approaches towards the understanding of integral membrane proteins: A structural perspective on G protein-coupled receptors.

Authors:  Reinhard Grisshammer
Journal:  Protein Sci       Date:  2017-06-07       Impact factor: 6.725

Review 8.  Single-Particle Cryo-EM at Crystallographic Resolution.

Authors:  Yifan Cheng
Journal:  Cell       Date:  2015-04-23       Impact factor: 41.582

9.  Molecular dynamics simulations of a membrane protein/amphipol complex.

Authors:  Jason D Perlmutter; Jean-Luc Popot; Jonathan N Sachs
Journal:  J Membr Biol       Date:  2014-06-15       Impact factor: 1.843

Review 10.  Amphipols for each season.

Authors:  Manuela Zoonens; Jean-Luc Popot
Journal:  J Membr Biol       Date:  2014-06-27       Impact factor: 1.843

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