Literature DB >> 21202936

4,4'-[2,2-Dimethyl-propane-1,3-diyl-bis(nitrilo-methyl-idyne)]dibenzonitrile.

Hoong-Kun Fun, Hadi Kargar, Reza Kia.   

Abstract

The title compound, C(21)H(20)N(4), is a bidentate Schiff base ligand. An intra-molecular C-H⋯N hydrogen bond forms a five-membered ring, producing an S(5) ring motif. The cyano and imino [-C(H(2))-N=C-] functional groups are coplanar with the benzene ring in each half of the mol-ecule. The packing of the mol-ecules is controlled by C-H⋯π and π-π inter-actions [centroid-to-centroid distance = 3.6944 (8) Å].

Entities:  

Year:  2008        PMID: 21202936      PMCID: PMC2961864          DOI: 10.1107/S1600536808018345

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature on hydrogen-bond motifs, see Bernstein et al. (1995 ▶). For values of bond lengths, see Allen et al. (1987 ▶). For related structures, see, for example: Li et al. (2005 ▶); Bomfim et al. (2005 ▶); Glidewell et al. (2005 ▶, 2006 ▶); Sun et al. (2004 ▶); Habibi et al. (2007 ▶); Fun et al. (2008 ▶).

Experimental

Crystal data

C21H20N4 M = 328.41 Monoclinic, a = 6.3833 (2) Å b = 34.0679 (8) Å c = 8.5190 (2) Å β = 100.654 (2)° V = 1820.65 (8) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 100.0 (1) K 0.42 × 0.20 × 0.19 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker 2005 ▶) T min = 0.970, T max = 0.986 21813 measured reflections 5329 independent reflections 3711 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.139 S = 1.04 5329 reflections 228 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808018345/at2578sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808018345/at2578Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H20N4F000 = 696
Mr = 328.41Dx = 1.198 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3870 reflections
a = 6.3833 (2) Åθ = 2.4–29.3º
b = 34.0679 (8) ŵ = 0.07 mm1
c = 8.5190 (2) ÅT = 100.0 (1) K
β = 100.654 (2)ºBlock, colourless
V = 1820.65 (8) Å30.42 × 0.20 × 0.19 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer5329 independent reflections
Radiation source: fine-focus sealed tube3711 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.046
T = 100.0(1) Kθmax = 30.2º
φ and ω scansθmin = 1.2º
Absorption correction: multi-scan(SADABS; Bruker 2005)h = −9→7
Tmin = 0.970, Tmax = 0.986k = −48→48
21813 measured reflectionsl = −12→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.056H-atom parameters constrained
wR(F2) = 0.139  w = 1/[σ2(Fo2) + (0.0568P)2 + 0.5007P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
5329 reflectionsΔρmax = 0.24 e Å3
228 parametersΔρmin = −0.19 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.8180 (2)0.14310 (4)1.22220 (14)0.0240 (3)
N20.7297 (2)0.07939 (4)0.76666 (14)0.0243 (3)
N30.1075 (3)0.23585 (4)1.75196 (17)0.0346 (4)
N40.2208 (2)0.01242 (4)−0.06341 (15)0.0278 (3)
C10.4959 (3)0.16261 (4)1.41380 (17)0.0234 (3)
H1A0.48440.13761.36890.028*
C20.3530 (3)0.17457 (4)1.50763 (17)0.0243 (3)
H2A0.24620.15761.52670.029*
C30.3698 (3)0.21224 (4)1.57374 (16)0.0226 (3)
C40.5288 (3)0.23767 (4)1.54525 (17)0.0254 (3)
H4A0.53860.26281.58860.031*
C50.6719 (3)0.22545 (4)1.45229 (17)0.0237 (3)
H5A0.77890.24241.43350.028*
C60.6573 (3)0.18785 (4)1.38618 (16)0.0211 (3)
C70.8171 (3)0.17624 (4)1.29000 (16)0.0224 (3)
H7A0.92300.19421.27850.027*
C80.9911 (3)0.13680 (4)1.13468 (17)0.0245 (3)
H8A1.07610.11471.18160.029*
H8B1.08230.15981.14690.029*
C90.9149 (3)0.12886 (4)0.95573 (16)0.0215 (3)
C100.7881 (3)0.09017 (4)0.93463 (16)0.0232 (3)
H10A0.87360.06940.99230.028*
H10B0.66000.09300.97960.028*
C110.5405 (3)0.06825 (4)0.71580 (16)0.0226 (3)
H11A0.44450.06750.78570.027*
C120.4686 (3)0.05644 (4)0.54744 (16)0.0212 (3)
C130.6067 (3)0.05915 (4)0.43861 (17)0.0231 (3)
H13A0.74420.06870.47190.028*
C140.5402 (3)0.04776 (4)0.28203 (17)0.0233 (3)
H14A0.63220.04970.20960.028*
C150.3345 (3)0.03329 (4)0.23295 (16)0.0212 (3)
C160.1937 (3)0.03068 (4)0.33940 (17)0.0256 (3)
H16A0.05610.02120.30580.031*
C170.2624 (3)0.04247 (4)0.49654 (17)0.0255 (3)
H17A0.16940.04100.56850.031*
C180.2220 (3)0.22512 (4)1.67256 (18)0.0270 (3)
C190.2687 (3)0.02115 (4)0.06860 (17)0.0227 (3)
C201.1140 (3)0.12547 (5)0.88075 (19)0.0287 (4)
H20A1.18950.15000.89200.043*
H20B1.07290.11920.76950.043*
H20C1.20460.10510.93370.043*
C210.7745 (3)0.16266 (4)0.87814 (18)0.0274 (4)
H21A0.85070.18700.89860.041*
H21B0.64660.16380.92220.041*
H21C0.73810.15840.76500.041*
U11U22U33U12U13U23
N10.0265 (8)0.0254 (6)0.0199 (6)−0.0005 (5)0.0037 (5)−0.0025 (5)
N20.0282 (8)0.0233 (6)0.0222 (6)−0.0009 (5)0.0070 (5)−0.0030 (5)
N30.0335 (10)0.0336 (8)0.0379 (8)0.0006 (6)0.0099 (7)−0.0063 (6)
N40.0268 (8)0.0305 (7)0.0270 (6)−0.0013 (6)0.0071 (6)−0.0028 (5)
C10.0282 (9)0.0186 (7)0.0219 (7)−0.0002 (6)0.0011 (6)−0.0015 (5)
C20.0257 (9)0.0222 (7)0.0244 (7)−0.0010 (6)0.0028 (6)0.0011 (5)
C30.0230 (9)0.0247 (7)0.0193 (6)0.0030 (6)0.0015 (6)−0.0003 (5)
C40.0319 (10)0.0203 (7)0.0234 (7)0.0002 (6)0.0034 (6)−0.0040 (5)
C50.0275 (9)0.0212 (7)0.0222 (7)−0.0033 (6)0.0037 (6)−0.0006 (5)
C60.0236 (9)0.0214 (7)0.0168 (6)0.0013 (6)0.0002 (6)0.0006 (5)
C70.0232 (9)0.0225 (7)0.0206 (6)−0.0012 (6)0.0019 (6)0.0007 (5)
C80.0250 (9)0.0235 (7)0.0244 (7)0.0015 (6)0.0029 (6)−0.0025 (5)
C90.0232 (9)0.0200 (7)0.0220 (6)0.0002 (6)0.0059 (6)−0.0009 (5)
C100.0275 (9)0.0234 (7)0.0191 (6)0.0005 (6)0.0056 (6)−0.0007 (5)
C110.0286 (10)0.0193 (7)0.0218 (7)0.0010 (6)0.0095 (6)0.0000 (5)
C120.0277 (9)0.0152 (6)0.0214 (6)0.0012 (6)0.0063 (6)0.0000 (5)
C130.0234 (9)0.0226 (7)0.0240 (7)−0.0016 (6)0.0058 (6)−0.0023 (5)
C140.0269 (9)0.0225 (7)0.0226 (7)−0.0003 (6)0.0101 (6)−0.0013 (5)
C150.0266 (9)0.0161 (6)0.0211 (6)0.0020 (6)0.0051 (6)−0.0004 (5)
C160.0256 (9)0.0258 (7)0.0257 (7)−0.0031 (6)0.0054 (6)−0.0004 (6)
C170.0274 (10)0.0289 (8)0.0227 (7)−0.0025 (7)0.0107 (6)0.0002 (6)
C180.0300 (10)0.0236 (7)0.0268 (7)0.0002 (7)0.0037 (7)−0.0020 (6)
C190.0240 (9)0.0199 (7)0.0253 (7)0.0007 (6)0.0075 (6)0.0000 (5)
C200.0284 (10)0.0290 (8)0.0309 (8)−0.0013 (7)0.0112 (7)−0.0014 (6)
C210.0306 (10)0.0242 (7)0.0274 (7)0.0020 (7)0.0053 (7)0.0009 (6)
N1—C71.2687 (18)C9—C211.532 (2)
N1—C81.459 (2)C9—C101.539 (2)
N2—C111.264 (2)C10—H10A0.9700
N2—C101.4576 (17)C10—H10B0.9700
N3—C181.143 (2)C11—C121.4786 (19)
N4—C191.1486 (19)C11—H11A0.9300
C1—C21.380 (2)C12—C171.391 (2)
C1—C61.395 (2)C12—C131.396 (2)
C1—H1A0.9300C13—C141.379 (2)
C2—C31.398 (2)C13—H13A0.9300
C2—H2A0.9300C14—C151.392 (2)
C3—C41.389 (2)C14—H14A0.9300
C3—C181.444 (2)C15—C161.392 (2)
C4—C51.379 (2)C15—C191.446 (2)
C4—H4A0.9300C16—C171.389 (2)
C5—C61.396 (2)C16—H16A0.9300
C5—H5A0.9300C17—H17A0.9300
C6—C71.476 (2)C20—H20A0.9600
C7—H7A0.9300C20—H20B0.9600
C8—C91.536 (2)C20—H20C0.9600
C8—H8A0.9700C21—H21A0.9600
C8—H8B0.9700C21—H21B0.9600
C9—C201.529 (2)C21—H21C0.9600
C7—N1—C8115.55 (14)N2—C10—H10B109.4
C11—N2—C10117.85 (13)C9—C10—H10B109.4
C2—C1—C6120.21 (13)H10A—C10—H10B108.0
C2—C1—H1A119.9N2—C11—C12121.33 (14)
C6—C1—H1A119.9N2—C11—H11A119.3
C1—C2—C3119.66 (15)C12—C11—H11A119.3
C1—C2—H2A120.2C17—C12—C13119.54 (13)
C3—C2—H2A120.2C17—C12—C11120.10 (14)
C4—C3—C2120.41 (14)C13—C12—C11120.36 (15)
C4—C3—C18119.30 (14)C14—C13—C12120.32 (15)
C2—C3—C18120.29 (15)C14—C13—H13A119.8
C5—C4—C3119.66 (14)C12—C13—H13A119.8
C5—C4—H4A120.2C13—C14—C15119.65 (14)
C3—C4—H4A120.2C13—C14—H14A120.2
C4—C5—C6120.45 (15)C15—C14—H14A120.2
C4—C5—H5A119.8C16—C15—C14120.88 (13)
C6—C5—H5A119.8C16—C15—C19120.37 (15)
C1—C6—C5119.60 (14)C14—C15—C19118.75 (14)
C1—C6—C7122.45 (13)C17—C16—C15118.87 (16)
C5—C6—C7117.95 (14)C17—C16—H16A120.6
N1—C7—C6123.57 (15)C15—C16—H16A120.6
N1—C7—H7A118.2C16—C17—C12120.73 (14)
C6—C7—H7A118.2C16—C17—H17A119.6
N1—C8—C9113.72 (13)C12—C17—H17A119.6
N1—C8—H8A108.8N3—C18—C3178.73 (19)
C9—C8—H8A108.8N4—C19—C15177.74 (17)
N1—C8—H8B108.8C9—C20—H20A109.5
C9—C8—H8B108.8C9—C20—H20B109.5
H8A—C8—H8B107.7H20A—C20—H20B109.5
C20—C9—C21109.99 (12)C9—C20—H20C109.5
C20—C9—C8107.02 (13)H20A—C20—H20C109.5
C21—C9—C8110.40 (12)H20B—C20—H20C109.5
C20—C9—C10110.25 (12)C9—C21—H21A109.5
C21—C9—C10109.88 (13)C9—C21—H21B109.5
C8—C9—C10109.26 (11)H21A—C21—H21B109.5
N2—C10—C9111.35 (11)C9—C21—H21C109.5
N2—C10—H10A109.4H21A—C21—H21C109.5
C9—C10—H10A109.4H21B—C21—H21C109.5
C6—C1—C2—C30.6 (2)C21—C9—C10—N264.21 (16)
C1—C2—C3—C40.2 (2)C8—C9—C10—N2−174.52 (13)
C1—C2—C3—C18−179.80 (14)C10—N2—C11—C12−179.43 (12)
C2—C3—C4—C5−0.6 (2)N2—C11—C12—C17176.85 (14)
C18—C3—C4—C5179.36 (15)N2—C11—C12—C13−3.1 (2)
C3—C4—C5—C60.3 (2)C17—C12—C13—C14−0.6 (2)
C2—C1—C6—C5−0.8 (2)C11—C12—C13—C14179.35 (13)
C2—C1—C6—C7178.55 (14)C12—C13—C14—C15−0.4 (2)
C4—C5—C6—C10.4 (2)C13—C14—C15—C160.9 (2)
C4—C5—C6—C7−179.02 (14)C13—C14—C15—C19−179.39 (13)
C8—N1—C7—C6−178.95 (13)C14—C15—C16—C17−0.5 (2)
C1—C6—C7—N11.7 (2)C19—C15—C16—C17179.79 (14)
C5—C6—C7—N1−178.92 (14)C15—C16—C17—C12−0.4 (2)
C7—N1—C8—C9−119.58 (14)C13—C12—C17—C161.0 (2)
N1—C8—C9—C20176.60 (12)C11—C12—C17—C16−178.95 (13)
N1—C8—C9—C2156.91 (17)C4—C3—C18—N3−19 (9)
N1—C8—C9—C10−64.04 (16)C2—C3—C18—N3161 (9)
C11—N2—C10—C9−134.31 (14)C16—C15—C19—N4149 (5)
C20—C9—C10—N2−57.17 (17)C14—C15—C19—N4−31 (5)
D—H···AD—HH···AD···AD—H···A
C20—H20B···N20.962.572.923 (2)102
C21—H21C···Cg1i0.962.953.7193 (16)138
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C12–C17 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C20—H20B⋯N20.962.572.923 (2)102
C21—H21CCg1i0.962.953.7193 (16)138

Symmetry code: (i) .

  4 in total

1.  Three-dimensional supramolecular structures in (E,E)-N,N'-bis(4-nitrobenzylidene)butane-1,4-diamine and (E,E)-N,N'-bis(4-nitrobenzylidene)hexane-1,6-diamine.

Authors:  Christopher Glidewell; John N Low; Janet M S Skakle; James L Wardell
Journal:  Acta Crystallogr C       Date:  2005-12-10       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  pi-Stacked hydrogen-bonded sheets in N,N'-bis(4-nitrobenzylidene)ethane-1,2-diamine and pi-stacked hydrogen-bonded chains in N,N'-bis(4-nitrobenzylidene)propane-1,3-diamine.

Authors:  Joao A S Bomfim; James L Wardell; John N Low; Janet M S Skakle; Christopher Glidewell
Journal:  Acta Crystallogr C       Date:  2004-12-18       Impact factor: 1.172

4.  4,4'-[2,2-Dimethyl-propane-1,3-diyl-bis(nitrilo-methyl-idyne)]dibenzonitrile.

Authors:  Hoong-Kun Fun; Hadi Kargar; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-19
  4 in total
  25 in total

1.  4,4'-[Butane-1,4-diylbis(nitrilo-methyl-idyne)]dibenzonitrile.

Authors:  Hoong-Kun Fun; Reza Kia; Hadi Kargar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-30

2.  N,N'-Bis(3-chloro-2-fluoro-benzyl-idene)ethane-1,2-diamine.

Authors:  Hoong-Kun Fun; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-13

3.  N,N'-Bis(2-iodo-benzyl-idene)ethane-1,2-diamine.

Authors:  Hoong-Kun Fun; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-06

4.  4,4'-[2,2-Dimethyl-propane-1,3-diyl-bis(nitrilo-methyl-idyne)]dibenzonitrile.

Authors:  Hoong-Kun Fun; Hadi Kargar; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-19

5.  N,N'-Bis(3,5-dichloro-benzyl-idene)-ethane-1,2-diamine.

Authors:  Hoong-Kun Fun; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-18

6.  4-[1-(Hydroxy-imino)ethyl]-N-(4-nitro-benzyl-idene)aniline.

Authors:  Li Zhao; Wen-Kui Dong; Jian-Chao Wu; Yin-Xia Sun; Li Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-12

7.  N,N'-Bis(4-chloro-benzyl-idene)-2,2-dimethyl-propane-1,3-diamine.

Authors:  Hoong-Kun Fun; Hadi Kargar; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08

8.  N,N'-Bis(4-bromo-benzyl-idene)-2,2-dimethyl-propane-1,3-diamine.

Authors:  Reza Kia; Hoong-Kun Fun; Hadi Kargar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-14

9.  4,4'-[Propane-1,2-diyl-bis(nitrilo-methyl-idyne)]-dibenzo-nitrile-4,4'-[ethane-1,2-diylbis(nitrilo-methyl-idyne)]dibenzonitrile [0.796 (2)/0.204 (2)].

Authors:  Hoong-Kun Fun; Reza Kia; Hadi Kargar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-18

10.  4,4'-[Ethylenebis(nitrilomethylidyne)]dibenzonitrile.

Authors:  Reza Kia; Hoong-Kun Fun; Hadi Kargar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-06
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