Literature DB >> 21581254

N,N'-Bis(4-chloro-benzyl-idene)-2,2-dimethyl-propane-1,3-diamine.

Hoong-Kun Fun, Hadi Kargar, Reza Kia.   

Abstract

The title compound, C(19)H(20)Cl(2)N(2), is a potential bidentate Schiff base ligand. Intra-molecular C-H⋯N hydrogen bonds form five-membered rings, generating S(5) ring motifs. Each imino functional group is coplanar with its adjacent benzene ring; the two benzene rings form a dihedral angle of 51.30 (4)°. An inter-esting feature of the crystal structure is weak inter-molecular Cl⋯Cl [3.4752 (4) Å] and Cl⋯N [3.2927 (9) Å] inter-actions. Inter-molecular Cl⋯N inter-actions link mol-ecules into dimers with R(2) (2)(22) ring motifs. The crystal structure is further stabilized by weak π-π [centroid-centroid distances = 3.6970 (6)-3.8560 (6) Å] inter-actions.

Entities:  

Year:  2008        PMID: 21581254      PMCID: PMC2960008          DOI: 10.1107/S1600536808035307

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond motifs, see Bernstein et al. (1995 ▶). For related structures see, for example: Li et al. (2005 ▶); Bomfim et al. (2005 ▶); Glidewell et al. (2005 ▶, 2006 ▶); Sun et al. (2004 ▶); Fun et al. (2008 ▶).

Experimental

Crystal data

C19H20Cl2N2 M = 347.27 Monoclinic, a = 19.6392 (3) Å b = 9.3275 (2) Å c = 9.7841 (2) Å β = 92.213 (1)° V = 1790.96 (6) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 100 (1) K 0.51 × 0.35 × 0.10 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.836, T max = 0.966 21670 measured reflections 6419 independent reflections 5273 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.095 S = 1.03 6419 reflections 208 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2 and SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808035307/tk2319sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808035307/tk2319Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H20Cl2N2F000 = 728
Mr = 347.27Dx = 1.288 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8119 reflections
a = 19.6392 (3) Åθ = 3.0–38.9º
b = 9.3275 (2) ŵ = 0.36 mm1
c = 9.7841 (2) ÅT = 100 (1) K
β = 92.213 (1)ºPlate, colourless
V = 1790.96 (6) Å30.51 × 0.35 × 0.10 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer6419 independent reflections
Radiation source: fine-focus sealed tube5273 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.028
T = 100.0(1) Kθmax = 32.5º
φ and ω scansθmin = 1.0º
Absorption correction: multi-scan(SADABS; Bruker, 2005)h = −29→29
Tmin = 0.836, Tmax = 0.966k = −14→12
21670 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.095  w = 1/[σ2(Fo2) + (0.0434P)2 + 0.5329P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
6419 reflectionsΔρmax = 0.38 e Å3
208 parametersΔρmin = −0.32 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.497643 (14)0.49166 (3)0.17717 (3)0.02553 (7)
Cl2−0.166144 (13)0.43828 (3)0.54241 (3)0.02640 (7)
N10.28500 (4)0.54904 (10)0.70403 (9)0.01950 (17)
N20.14528 (4)0.37002 (10)0.85655 (9)0.01864 (17)
C10.35398 (5)0.47808 (13)0.45572 (11)0.0216 (2)
H1A0.31550.42380.47310.026*
C20.39180 (6)0.44677 (13)0.34258 (11)0.0226 (2)
H2A0.37910.37200.28420.027*
C30.44914 (5)0.52935 (12)0.31802 (11)0.01962 (19)
C40.46927 (5)0.64046 (12)0.40359 (11)0.0208 (2)
H4A0.50800.69390.38630.025*
C50.43069 (5)0.67111 (12)0.51594 (11)0.01929 (19)
H5A0.44340.74660.57350.023*
C60.37302 (5)0.59009 (11)0.54371 (10)0.01710 (18)
C70.33470 (5)0.62450 (12)0.66609 (11)0.01815 (19)
H7A0.34740.70460.71760.022*
C80.25179 (5)0.59532 (12)0.82751 (11)0.0202 (2)
H8A0.20460.61870.80480.024*
H8B0.27400.68130.86280.024*
C90.25474 (5)0.47832 (12)0.93875 (11)0.01860 (19)
C100.21738 (5)0.34242 (12)0.88813 (11)0.01881 (19)
H10A0.23860.30700.80680.023*
H10B0.22160.26880.95790.023*
C110.12219 (5)0.33583 (11)0.73837 (11)0.01765 (18)
H11A0.15150.29360.67770.021*
C120.05057 (5)0.36042 (11)0.69311 (10)0.01656 (18)
C130.00695 (5)0.44318 (12)0.77071 (11)0.01855 (19)
H13A0.02300.48320.85290.022*
C14−0.06007 (5)0.46587 (12)0.72583 (11)0.01985 (19)
H14A−0.08910.52070.77740.024*
C15−0.08314 (5)0.40546 (12)0.60260 (11)0.01940 (19)
C16−0.04087 (5)0.32318 (12)0.52386 (11)0.0204 (2)
H16A−0.05710.28320.44180.024*
C170.02632 (5)0.30141 (12)0.56973 (11)0.01898 (19)
H17A0.05530.24700.51750.023*
C180.32900 (5)0.43799 (14)0.97383 (12)0.0249 (2)
H18A0.35340.52141.00580.037*
H18B0.34970.40140.89370.037*
H18C0.33040.36601.04400.037*
C190.22142 (6)0.53832 (14)1.06574 (12)0.0261 (2)
H19A0.24520.62311.09600.039*
H19B0.22350.46781.13720.039*
H19C0.17470.56161.04350.039*
U11U22U33U12U13U23
Cl10.02940 (13)0.02639 (15)0.02128 (12)0.00830 (10)0.00692 (10)0.00370 (10)
Cl20.01662 (11)0.02663 (15)0.03566 (15)0.00011 (9)−0.00260 (9)0.00411 (11)
N10.0189 (4)0.0204 (4)0.0192 (4)−0.0005 (3)0.0014 (3)0.0005 (3)
N20.0146 (3)0.0200 (4)0.0215 (4)−0.0014 (3)0.0025 (3)0.0000 (3)
C10.0202 (4)0.0231 (5)0.0214 (5)−0.0044 (4)0.0001 (4)−0.0006 (4)
C20.0251 (5)0.0231 (5)0.0197 (5)−0.0028 (4)−0.0007 (4)−0.0026 (4)
C30.0221 (4)0.0194 (5)0.0175 (4)0.0048 (4)0.0024 (4)0.0038 (4)
C40.0199 (4)0.0176 (5)0.0250 (5)−0.0003 (4)0.0039 (4)0.0043 (4)
C50.0195 (4)0.0154 (5)0.0230 (5)−0.0013 (3)0.0012 (4)0.0006 (4)
C60.0169 (4)0.0167 (5)0.0177 (4)0.0001 (3)−0.0004 (3)0.0023 (4)
C70.0178 (4)0.0174 (5)0.0191 (4)0.0002 (3)−0.0002 (3)0.0007 (4)
C80.0185 (4)0.0197 (5)0.0226 (5)−0.0003 (4)0.0044 (4)−0.0008 (4)
C90.0162 (4)0.0215 (5)0.0182 (4)−0.0019 (3)0.0019 (3)−0.0015 (4)
C100.0158 (4)0.0191 (5)0.0216 (5)0.0002 (3)0.0018 (3)0.0000 (4)
C110.0165 (4)0.0160 (5)0.0207 (5)0.0005 (3)0.0049 (3)0.0005 (4)
C120.0161 (4)0.0153 (4)0.0184 (4)−0.0005 (3)0.0028 (3)0.0019 (3)
C130.0190 (4)0.0185 (5)0.0183 (5)0.0007 (3)0.0033 (3)−0.0006 (4)
C140.0180 (4)0.0189 (5)0.0230 (5)0.0017 (4)0.0046 (4)0.0015 (4)
C150.0156 (4)0.0177 (5)0.0249 (5)−0.0010 (3)0.0005 (3)0.0049 (4)
C160.0215 (4)0.0195 (5)0.0202 (5)−0.0020 (4)−0.0003 (4)−0.0008 (4)
C170.0194 (4)0.0180 (5)0.0197 (5)0.0007 (3)0.0029 (3)−0.0006 (4)
C180.0186 (4)0.0303 (6)0.0255 (5)−0.0024 (4)−0.0025 (4)0.0008 (4)
C190.0272 (5)0.0292 (6)0.0222 (5)−0.0042 (4)0.0065 (4)−0.0055 (4)
Cl1—C31.7411 (11)C9—C191.5323 (15)
Cl2—C151.7390 (10)C9—C101.5370 (15)
N1—C71.2703 (13)C10—H10A0.9700
N1—C81.4602 (14)C10—H10B0.9700
N2—C111.2664 (14)C11—C121.4761 (14)
N2—C101.4603 (13)C11—H11A0.9300
C1—C21.3876 (15)C12—C171.3939 (15)
C1—C61.3956 (15)C12—C131.3987 (14)
C1—H1A0.9300C13—C141.3876 (14)
C2—C31.3929 (15)C13—H13A0.9300
C2—H2A0.9300C14—C151.3908 (16)
C3—C41.3805 (16)C14—H14A0.9300
C4—C51.3886 (14)C15—C161.3860 (15)
C4—H4A0.9300C16—C171.3921 (14)
C5—C61.3970 (14)C16—H16A0.9300
C5—H5A0.9300C17—H17A0.9300
C6—C71.4741 (14)C18—H18A0.9600
C7—H7A0.9300C18—H18B0.9600
C8—C91.5408 (16)C18—H18C0.9600
C8—H8A0.9700C19—H19A0.9600
C8—H8B0.9700C19—H19B0.9600
C9—C181.5322 (15)C19—H19C0.9600
C7—N1—C8116.79 (9)C9—C10—H10A109.3
C11—N2—C10117.31 (9)N2—C10—H10B109.3
C2—C1—C6120.72 (10)C9—C10—H10B109.3
C2—C1—H1A119.6H10A—C10—H10B107.9
C6—C1—H1A119.6N2—C11—C12122.56 (9)
C1—C2—C3118.84 (10)N2—C11—H11A118.7
C1—C2—H2A120.6C12—C11—H11A118.7
C3—C2—H2A120.6C17—C12—C13119.48 (9)
C4—C3—C2121.67 (10)C17—C12—C11119.22 (9)
C4—C3—Cl1118.62 (8)C13—C12—C11121.30 (9)
C2—C3—Cl1119.71 (9)C14—C13—C12120.38 (10)
C3—C4—C5118.84 (10)C14—C13—H13A119.8
C3—C4—H4A120.6C12—C13—H13A119.8
C5—C4—H4A120.6C13—C14—C15119.07 (10)
C4—C5—C6120.92 (10)C13—C14—H14A120.5
C4—C5—H5A119.5C15—C14—H14A120.5
C6—C5—H5A119.5C16—C15—C14121.61 (9)
C1—C6—C5119.00 (9)C16—C15—Cl2118.88 (9)
C1—C6—C7122.08 (9)C14—C15—Cl2119.47 (8)
C5—C6—C7118.91 (9)C15—C16—C17118.83 (10)
N1—C7—C6122.61 (10)C15—C16—H16A120.6
N1—C7—H7A118.7C17—C16—H16A120.6
C6—C7—H7A118.7C16—C17—C12120.63 (9)
N1—C8—C9111.67 (9)C16—C17—H17A119.7
N1—C8—H8A109.3C12—C17—H17A119.7
C9—C8—H8A109.3C9—C18—H18A109.5
N1—C8—H8B109.3C9—C18—H18B109.5
C9—C8—H8B109.3H18A—C18—H18B109.5
H8A—C8—H8B107.9C9—C18—H18C109.5
C18—C9—C19109.91 (9)H18A—C18—H18C109.5
C18—C9—C10107.95 (9)H18B—C18—H18C109.5
C19—C9—C10110.43 (8)C9—C19—H19A109.5
C18—C9—C8109.97 (8)C9—C19—H19B109.5
C19—C9—C8107.97 (9)H19A—C19—H19B109.5
C10—C9—C8110.61 (9)C9—C19—H19C109.5
N2—C10—C9111.70 (9)H19A—C19—H19C109.5
N2—C10—H10A109.3H19B—C19—H19C109.5
C6—C1—C2—C3−0.13 (17)C11—N2—C10—C9125.72 (10)
C1—C2—C3—C40.35 (17)C18—C9—C10—N2178.07 (9)
C1—C2—C3—Cl1179.70 (9)C19—C9—C10—N257.90 (12)
C2—C3—C4—C5−0.74 (17)C8—C9—C10—N2−61.57 (11)
Cl1—C3—C4—C5179.89 (8)C10—N2—C11—C12−178.94 (9)
C3—C4—C5—C60.93 (16)N2—C11—C12—C17−170.66 (10)
C2—C1—C6—C50.31 (17)N2—C11—C12—C1310.16 (16)
C2—C1—C6—C7−178.88 (10)C17—C12—C13—C140.35 (16)
C4—C5—C6—C1−0.72 (16)C11—C12—C13—C14179.52 (10)
C4—C5—C6—C7178.50 (10)C12—C13—C14—C15−0.14 (16)
C8—N1—C7—C6179.80 (9)C13—C14—C15—C160.08 (16)
C1—C6—C7—N14.79 (16)C13—C14—C15—Cl2−177.78 (8)
C5—C6—C7—N1−174.40 (10)C14—C15—C16—C17−0.23 (16)
C7—N1—C8—C9−120.74 (10)Cl2—C15—C16—C17177.64 (8)
N1—C8—C9—C1857.83 (12)C15—C16—C17—C120.44 (16)
N1—C8—C9—C19177.75 (8)C13—C12—C17—C16−0.51 (16)
N1—C8—C9—C10−61.31 (11)C11—C12—C17—C16−179.70 (10)
D—H···AD—HH···AD···AD—H···A
C18—H18B···N10.962.602.9346 (15)101
C19—H19C···N20.962.612.9416 (15)101
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C18—H18B⋯N10.962.602.9346 (15)101
C19—H19C⋯N20.962.612.9416 (15)101
  4 in total

1.  Three-dimensional supramolecular structures in (E,E)-N,N'-bis(4-nitrobenzylidene)butane-1,4-diamine and (E,E)-N,N'-bis(4-nitrobenzylidene)hexane-1,6-diamine.

Authors:  Christopher Glidewell; John N Low; Janet M S Skakle; James L Wardell
Journal:  Acta Crystallogr C       Date:  2005-12-10       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  pi-Stacked hydrogen-bonded sheets in N,N'-bis(4-nitrobenzylidene)ethane-1,2-diamine and pi-stacked hydrogen-bonded chains in N,N'-bis(4-nitrobenzylidene)propane-1,3-diamine.

Authors:  Joao A S Bomfim; James L Wardell; John N Low; Janet M S Skakle; Christopher Glidewell
Journal:  Acta Crystallogr C       Date:  2004-12-18       Impact factor: 1.172

4.  4,4'-[2,2-Dimethyl-propane-1,3-diyl-bis(nitrilo-methyl-idyne)]dibenzonitrile.

Authors:  Hoong-Kun Fun; Hadi Kargar; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-19
  4 in total
  1 in total

1.  2,2-Dimethyl-N,N'-bis-(4-nitro-benzyl-idene)propane-1,3-diamine.

Authors:  Hoong-Kun Fun; Hadi Kargar; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.