Literature DB >> 21201086

N,N'-Bis(2-iodo-benzyl-idene)ethane-1,2-diamine.

Hoong-Kun Fun1, Reza Kia.   

Abstract

The mol-ecule of the title Schiff base compound, C(16)H(14)I(2)N(2), lies across a crystallographic inversion centre. An intra-molecular C-H⋯I hydrogen bond forms a five-membered ring, producing an S(5) ring motif. The C=N bond is coplanar with the benzene ring and adopts a trans configuration. Within the mol-ecule, the planar units are parallel, but extend in opposite directions from the dimethyl-ene bridge. An inter-esting feature of the crystal structure is the short I⋯N [3.2096 (15) Å] inter-action, which is significantly shorter than the sum of the van der Waals radii of these atoms. In the crystal structure, mol-ecules are linked into one-dimensional extended chains along the c axis and also into one-dimensional extended chains along the b axis through short inter-molecular I⋯N inter-actions, forming two-dimensional networks parallel to the bc plane.

Entities:  

Year:  2008        PMID: 21201086      PMCID: PMC2959359          DOI: 10.1107/S1600536808027608

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the hydrogen bond capability of halogens, see: Brammer et al. (2001 ▶). For halogen–electronegative atom inter­actions, see: Lommerse et al. (1996 ▶). For related structures, see, for example: Fun, Kia & Kargar (2008 ▶); Fun, Kargar & Kia (2008 ▶); Fun, Mirkhani et al. (2008 ▶); Calligaris & Randaccio, (1987 ▶). For information on Schiff base ligands, their complexes and their applications, see, for example: Pal et al. (2005 ▶); Hou et al. (2001 ▶); Ren et al. (2002 ▶).

Experimental

Crystal data

C16H14I2N2 M = 488.09 Monoclinic, a = 12.1820 (4) Å b = 4.5978 (1) Å c = 14.5664 (4) Å β = 94.424 (2)° V = 813.44 (4) Å3 Z = 2 Mo Kα radiation μ = 3.86 mm−1 T = 100.0 (1) K 0.51 × 0.14 × 0.02 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.244, T max = 0.916 24819 measured reflections 4235 independent reflections 3466 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.074 S = 1.16 4235 reflections 115 parameters All H-atom parameters refined Δρmax = 1.89 e Å−3 Δρmin = −1.74 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808027608/at2623sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808027608/at2623Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14I2N2F(000) = 460
Mr = 488.09Dx = 1.993 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7125 reflections
a = 12.1820 (4) Åθ = 2.8–38.9°
b = 4.5978 (1) ŵ = 3.86 mm1
c = 14.5664 (4) ÅT = 100 K
β = 94.424 (2)°Plate, colourless
V = 813.44 (4) Å30.51 × 0.14 × 0.02 mm
Z = 2
Bruker SMART APEXII CCD area-detector diffractometer4235 independent reflections
Radiation source: fine-focus sealed tube3466 reflections with I > 2σ(I)
graphiteRint = 0.044
φ and ω scansθmax = 37.5°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −19→20
Tmin = 0.244, Tmax = 0.917k = −7→7
24819 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.074All H-atom parameters refined
S = 1.16w = 1/[σ2(Fo2) + (0.0295P)2 + 0.1458P] where P = (Fo2 + 2Fc2)/3
4235 reflections(Δ/σ)max = 0.001
115 parametersΔρmax = 1.89 e Å3
0 restraintsΔρmin = −1.74 e Å3
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.219874 (11)0.02241 (3)0.328844 (8)0.01748 (5)
N10.14038 (12)0.3597 (4)0.03053 (10)0.0158 (3)
C10.29294 (15)−0.0875 (4)0.20654 (12)0.0146 (3)
C20.37697 (15)−0.2923 (4)0.21484 (12)0.0167 (3)
C30.43327 (16)−0.3648 (5)0.13879 (12)0.0178 (3)
C40.40419 (16)−0.2345 (5)0.05442 (13)0.0185 (4)
C50.32010 (17)−0.0341 (4)0.04599 (13)0.0160 (3)
H50.2813−0.0060−0.01620.019*
C60.26222 (16)0.0456 (4)0.12178 (13)0.0135 (3)
C70.17398 (15)0.2630 (4)0.10940 (12)0.0147 (3)
C80.05021 (16)0.5681 (4)0.02623 (13)0.0160 (3)
H8B0.0723 (18)0.725 (5)−0.0044 (15)0.016 (6)*
H40.4465 (18)−0.278 (5)0.0004 (15)0.017 (6)*
H8A0.0293 (19)0.629 (6)0.0866 (16)0.021 (6)*
H20.3998 (18)−0.387 (6)0.2766 (16)0.015 (6)*
H70.144 (2)0.323 (7)0.1634 (18)0.034 (7)*
H30.488 (3)−0.507 (5)0.148 (2)0.031 (9)*
U11U22U33U12U13U23
I10.02070 (7)0.01995 (7)0.01214 (6)0.00044 (4)0.00353 (4)0.00024 (4)
N10.0157 (7)0.0154 (8)0.0163 (6)0.0034 (6)0.0008 (5)0.0003 (5)
C10.0162 (8)0.0149 (8)0.0127 (7)−0.0002 (6)0.0015 (6)−0.0012 (6)
C20.0184 (8)0.0151 (8)0.0160 (7)0.0003 (7)−0.0026 (6)0.0001 (6)
C30.0155 (8)0.0175 (9)0.0201 (8)0.0046 (7)−0.0003 (6)−0.0004 (7)
C40.0192 (8)0.0187 (9)0.0178 (8)0.0049 (7)0.0033 (6)−0.0019 (6)
C50.0188 (8)0.0161 (8)0.0132 (7)0.0018 (6)0.0028 (6)−0.0030 (6)
C60.0151 (8)0.0132 (8)0.0123 (7)0.0001 (6)0.0011 (6)−0.0011 (6)
C70.0147 (7)0.0129 (8)0.0168 (7)0.0008 (6)0.0021 (6)−0.0011 (6)
C80.0151 (8)0.0149 (8)0.0178 (8)0.0038 (6)0.0009 (6)0.0002 (6)
I1—C12.1133 (17)C4—C51.376 (3)
N1—C71.270 (2)C4—H40.99 (2)
N1—C81.455 (2)C5—C61.404 (3)
C1—C21.389 (3)C5—H50.9975
C1—C61.403 (3)C6—C71.469 (3)
C2—C31.388 (3)C7—H70.93 (3)
C2—H21.02 (2)C8—C8i1.526 (4)
C3—C41.388 (3)C8—H8B0.90 (2)
C3—H30.94 (3)C8—H8A0.98 (2)
C7—N1—C8117.33 (16)C4—C5—H5117.7
C2—C1—C6121.13 (17)C6—C5—H5116.7
C2—C1—I1116.36 (13)C1—C6—C5117.54 (18)
C6—C1—I1122.46 (14)C1—C6—C7123.23 (17)
C3—C2—C1119.97 (17)C5—C6—C7119.23 (17)
C3—C2—H2118.9 (13)N1—C7—C6122.09 (17)
C1—C2—H2121.1 (13)N1—C7—H7122.8 (17)
C2—C3—C4119.67 (18)C6—C7—H7115.1 (17)
C2—C3—H3116 (2)N1—C8—C8i108.9 (2)
C4—C3—H3124 (2)N1—C8—H8B107.1 (14)
C5—C4—C3120.34 (18)C8i—C8—H8B109.9 (14)
C5—C4—H4119.5 (13)N1—C8—H8A113.6 (15)
C3—C4—H4120.1 (13)C8i—C8—H8A108.3 (14)
C4—C5—C6121.35 (18)H8B—C8—H8A109 (2)
C6—C1—C2—C31.1 (3)I1—C1—C6—C7−2.6 (3)
I1—C1—C2—C3−176.50 (15)C4—C5—C6—C1−0.2 (3)
C1—C2—C3—C4−0.9 (3)C4—C5—C6—C7179.31 (18)
C2—C3—C4—C50.1 (3)C8—N1—C7—C6178.18 (17)
C3—C4—C5—C60.5 (3)C1—C6—C7—N1−173.04 (19)
C2—C1—C6—C5−0.5 (3)C5—C6—C7—N17.4 (3)
I1—C1—C6—C5176.90 (13)C7—N1—C8—C8i−114.6 (2)
C2—C1—C6—C7179.94 (17)
D—H···AD—HH···AD···AD—H···A
C7—H7···I10.93 (3)2.87 (3)3.3880 (18)116 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯I10.93 (3)2.87 (3)3.3880 (18)116 (2)
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