Literature DB >> 21588262

2-Amino-4-methylpyridinium 2-hy-droxy-3,5-dinitro-benzoate.

Ching Kheng Quah1, Madhukar Hemamalini, Hoong-Kun Fun.   

Abstract

In the anion of the title mol-ecular salt, C(6)H(9)N(2) (+)·C(7)H(3)N(2)O(7) (-), the two nitro groups are twisted from the attached benzene ring with dihedral angles of 27.36 (10) and 4.86 (11)°. The anion is stabilized by an intra-molecular O-H⋯O hydrogen bond, which generates an S(6) ring motif. In the crystal, the cations and anions are linked by N-H⋯O and C-H⋯O inter-actions and are further consolidated by C-H⋯π inter-actions, to generate a three-dimensional network. A short O⋯N contact of 2.876 (2) Å also occurs.

Entities:  

Year:  2010        PMID: 21588262      PMCID: PMC3007456          DOI: 10.1107/S1600536810025912

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For substituted pyridines, see: Pozharski et al. (1997 ▶); Katritzky et al. (1996 ▶). For details of hydrogen bonding, see: Scheiner (1997 ▶); Jeffrey & Saenger (1991 ▶); Jeffrey (1997 ▶). For 2-amino-substituted pyridines, see: Navarro Ranninger et al. (1985 ▶); Luque et al. (1997 ▶); Qin et al. (1999 ▶); Ren et al. (2002 ▶); Rivas et al. (2003 ▶); Jin et al. (2001 ▶); Albrecht et al. (2003 ▶). For Lewis bases with 3,5-dinitrosalicylic acid, see: Hindawey et al. (1980 ▶); Issa et al. (1981 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related structures, see: Quah et al. (2008a ▶,b ▶, 2010 ▶). For reference bond lengths, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C6H9N2 +·C7H3N2O7 − M = 336.27 Monoclinic, a = 6.0111 (15) Å b = 9.652 (3) Å c = 24.436 (6) Å β = 100.546 (7)° V = 1393.8 (7) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 100 K 0.48 × 0.08 × 0.06 mm

Data collection

Bruker SMART APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.939, T max = 0.992 12178 measured reflections 3229 independent reflections 2283 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.153 S = 1.03 3229 reflections 222 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810025912/hb5538sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025912/hb5538Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C7H3N2O7F(000) = 696
Mr = 336.27Dx = 1.602 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2122 reflections
a = 6.0111 (15) Åθ = 2.7–26.4°
b = 9.652 (3) ŵ = 0.13 mm1
c = 24.436 (6) ÅT = 100 K
β = 100.546 (7)°Needle, yellow
V = 1393.8 (7) Å30.48 × 0.08 × 0.06 mm
Z = 4
Bruker SMART APEXII DUO CCD diffractometer3229 independent reflections
Radiation source: fine-focus sealed tube2283 reflections with I > 2σ(I)
graphiteRint = 0.057
φ and ω scansθmax = 27.6°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −7→7
Tmin = 0.939, Tmax = 0.992k = −12→12
12178 measured reflectionsl = −31→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.153H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0909P)2] where P = (Fo2 + 2Fc2)/3
3229 reflections(Δ/σ)max = 0.001
222 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.44 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.2405 (3)0.80105 (17)0.83755 (7)0.0179 (4)
H1N10.13250.73480.84550.034 (7)*
N20.5190 (3)0.75204 (18)0.91264 (7)0.0220 (4)
H1N20.41460.68100.92190.052 (9)*
H2N20.66550.76640.93400.063 (10)*
C10.4517 (3)0.8236 (2)0.86605 (8)0.0170 (4)
C20.5856 (3)0.9234 (2)0.84489 (9)0.0187 (4)
H2A0.73210.94080.86360.022*
C30.5022 (3)0.9946 (2)0.79722 (9)0.0187 (4)
C40.2784 (3)0.9680 (2)0.76912 (9)0.0199 (4)
H4A0.21791.01630.73690.024*
C50.1541 (3)0.8708 (2)0.79013 (9)0.0192 (4)
H5A0.00760.85180.77180.023*
C60.6432 (4)1.1006 (2)0.77401 (9)0.0231 (5)
H6A0.77901.11810.80060.035*
H6B0.55871.18500.76660.035*
H6C0.68201.06620.74010.035*
O11.1381 (2)0.34244 (14)0.99102 (6)0.0198 (3)
H1O11.23040.41810.97980.119 (16)*
O20.9779 (2)0.16274 (14)1.05842 (6)0.0218 (4)
O30.7607 (2)0.00824 (15)1.01170 (7)0.0242 (4)
O40.1674 (2)0.17877 (16)0.86962 (7)0.0264 (4)
O50.2470 (3)0.33999 (17)0.81463 (7)0.0321 (4)
O60.9513 (2)0.60237 (15)0.85954 (6)0.0219 (3)
O71.2134 (2)0.53070 (14)0.93122 (6)0.0206 (3)
N30.8463 (3)0.12385 (17)1.01644 (7)0.0176 (4)
N40.2953 (3)0.26704 (18)0.85650 (7)0.0212 (4)
C70.9355 (3)0.32562 (19)0.96014 (9)0.0159 (4)
C80.7863 (3)0.2196 (2)0.97011 (8)0.0169 (4)
C90.5784 (3)0.1992 (2)0.93658 (9)0.0172 (4)
H9A0.48370.12790.94380.021*
C100.5143 (3)0.2876 (2)0.89190 (8)0.0176 (4)
C110.6536 (3)0.3935 (2)0.88017 (9)0.0179 (4)
H11A0.60660.45150.84990.022*
C120.8626 (3)0.4127 (2)0.91368 (8)0.0164 (4)
C131.0164 (3)0.5246 (2)0.89969 (9)0.0175 (4)
U11U22U33U12U13U23
N10.0180 (8)0.0159 (8)0.0193 (9)−0.0010 (6)0.0019 (7)−0.0004 (7)
N20.0196 (8)0.0221 (9)0.0226 (10)−0.0029 (7)−0.0002 (7)0.0060 (7)
C10.0167 (9)0.0148 (9)0.0197 (11)0.0023 (7)0.0034 (8)−0.0016 (8)
C20.0175 (9)0.0153 (9)0.0229 (11)0.0004 (7)0.0029 (8)0.0005 (8)
C30.0221 (10)0.0133 (9)0.0218 (11)0.0011 (8)0.0066 (8)−0.0027 (8)
C40.0242 (10)0.0159 (10)0.0195 (11)0.0034 (8)0.0039 (8)0.0006 (8)
C50.0181 (9)0.0189 (10)0.0195 (11)0.0037 (8)0.0008 (8)−0.0012 (8)
C60.0278 (11)0.0168 (10)0.0256 (12)0.0000 (8)0.0069 (9)0.0029 (9)
O10.0170 (7)0.0188 (7)0.0215 (8)−0.0024 (6)−0.0014 (6)0.0008 (6)
O20.0205 (7)0.0234 (8)0.0200 (8)−0.0013 (6)−0.0001 (6)−0.0001 (6)
O30.0203 (7)0.0164 (7)0.0353 (9)−0.0040 (6)0.0033 (6)0.0049 (7)
O40.0200 (7)0.0276 (8)0.0309 (9)−0.0066 (6)0.0028 (6)−0.0028 (7)
O50.0303 (9)0.0338 (9)0.0272 (9)−0.0016 (7)−0.0084 (7)0.0069 (7)
O60.0245 (8)0.0183 (7)0.0216 (8)−0.0039 (6)0.0006 (6)0.0028 (6)
O70.0182 (7)0.0181 (7)0.0244 (8)−0.0021 (5)0.0009 (6)0.0025 (6)
N30.0152 (8)0.0162 (8)0.0218 (9)−0.0002 (6)0.0042 (7)0.0022 (7)
N40.0187 (8)0.0203 (9)0.0238 (10)0.0003 (7)0.0016 (7)−0.0026 (8)
C70.0144 (9)0.0144 (9)0.0186 (10)0.0010 (7)0.0021 (8)−0.0025 (8)
C80.0186 (9)0.0139 (9)0.0177 (10)0.0021 (7)0.0020 (8)−0.0006 (8)
C90.0169 (9)0.0142 (9)0.0207 (11)−0.0004 (7)0.0037 (8)−0.0017 (8)
C100.0161 (9)0.0162 (9)0.0191 (11)0.0008 (7)−0.0007 (8)−0.0028 (8)
C110.0198 (9)0.0159 (9)0.0181 (10)0.0043 (8)0.0035 (8)0.0000 (8)
C120.0164 (9)0.0132 (9)0.0199 (11)0.0005 (7)0.0038 (8)−0.0018 (8)
C130.0189 (9)0.0144 (9)0.0193 (11)−0.0002 (7)0.0040 (8)−0.0001 (8)
N1—C11.349 (2)O1—H1O10.9856
N1—C51.359 (3)O2—N31.234 (2)
N1—H1N10.9560O3—N31.226 (2)
N2—C11.330 (3)O4—N41.229 (2)
N2—H1N20.9833O5—N41.232 (2)
N2—H2N20.9478O6—C131.241 (2)
C1—C21.413 (3)O7—C131.291 (2)
C2—C31.366 (3)N3—C81.455 (3)
C2—H2A0.9300N4—C101.450 (2)
C3—C41.417 (3)C7—C81.411 (3)
C3—C61.504 (3)C7—C121.416 (3)
C4—C51.358 (3)C8—C91.377 (3)
C4—H4A0.9300C9—C101.383 (3)
C5—H5A0.9300C9—H9A0.9300
C6—H6A0.9600C10—C111.385 (3)
C6—H6B0.9600C11—C121.381 (3)
C6—H6C0.9600C11—H11A0.9300
O1—C71.320 (2)C12—C131.501 (3)
C1—N1—C5122.49 (18)O3—N3—O2123.37 (17)
C1—N1—H1N1127.8O3—N3—C8117.70 (16)
C5—N1—H1N1109.6O2—N3—C8118.93 (16)
C1—N2—H1N2116.8O4—N4—O5123.33 (18)
C1—N2—H2N2120.1O4—N4—C10118.81 (17)
H1N2—N2—H2N2122.9O5—N4—C10117.86 (17)
N2—C1—N1117.93 (18)O1—C7—C8122.67 (18)
N2—C1—C2124.26 (18)O1—C7—C12120.20 (18)
N1—C1—C2117.80 (18)C8—C7—C12117.10 (17)
C3—C2—C1120.67 (19)C9—C8—C7122.50 (19)
C3—C2—H2A119.7C9—C8—N3116.15 (17)
C1—C2—H2A119.7C7—C8—N3121.34 (17)
C2—C3—C4119.33 (19)C8—C9—C10118.22 (19)
C2—C3—C6121.29 (19)C8—C9—H9A120.9
C4—C3—C6119.38 (18)C10—C9—H9A120.9
C5—C4—C3118.77 (19)C9—C10—C11121.79 (18)
C5—C4—H4A120.6C9—C10—N4118.56 (18)
C3—C4—H4A120.6C11—C10—N4119.65 (18)
C4—C5—N1120.93 (18)C12—C11—C10119.70 (19)
C4—C5—H5A119.5C12—C11—H11A120.2
N1—C5—H5A119.5C10—C11—H11A120.2
C3—C6—H6A109.5C11—C12—C7120.68 (18)
C3—C6—H6B109.5C11—C12—C13119.52 (18)
H6A—C6—H6B109.5C7—C12—C13119.77 (17)
C3—C6—H6C109.5O6—C13—O7124.53 (18)
H6A—C6—H6C109.5O6—C13—C12119.82 (18)
H6B—C6—H6C109.5O7—C13—C12115.65 (17)
C7—O1—H1O1116.1
C5—N1—C1—N2178.61 (18)N3—C8—C9—C10−179.85 (17)
C5—N1—C1—C2−0.4 (3)C8—C9—C10—C110.6 (3)
N2—C1—C2—C3−178.7 (2)C8—C9—C10—N4−179.81 (17)
N1—C1—C2—C30.2 (3)O4—N4—C10—C95.3 (3)
C1—C2—C3—C40.3 (3)O5—N4—C10—C9−174.93 (18)
C1—C2—C3—C6−179.65 (19)O4—N4—C10—C11−175.09 (18)
C2—C3—C4—C5−0.8 (3)O5—N4—C10—C114.7 (3)
C6—C3—C4—C5179.17 (19)C9—C10—C11—C120.0 (3)
C3—C4—C5—N10.7 (3)N4—C10—C11—C12−179.65 (18)
C1—N1—C5—C4−0.1 (3)C10—C11—C12—C7−0.4 (3)
O1—C7—C8—C9−177.55 (19)C10—C11—C12—C13177.93 (18)
C12—C7—C8—C90.3 (3)O1—C7—C12—C11178.16 (18)
O1—C7—C8—N31.6 (3)C8—C7—C12—C110.3 (3)
C12—C7—C8—N3179.39 (17)O1—C7—C12—C13−0.2 (3)
O3—N3—C8—C926.5 (3)C8—C7—C12—C13−178.04 (17)
O2—N3—C8—C9−152.80 (18)C11—C12—C13—O62.8 (3)
O3—N3—C8—C7−152.64 (18)C7—C12—C13—O6−178.83 (19)
O2—N3—C8—C728.0 (3)C11—C12—C13—O7−176.29 (18)
C7—C8—C9—C10−0.7 (3)C7—C12—C13—O72.1 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O6i0.961.752.707 (2)175
N2—H1N2···O7i0.981.932.907 (2)173
N2—H2N2···O1ii0.952.252.974 (2)133
N2—H2N2···O2ii0.952.233.089 (2)151
O1—H1O1···O70.991.602.426 (2)138
C2—H2A···O2ii0.932.543.300 (3)139
C4—H4A···O6iii0.932.533.447 (3)169
C5—H5A···O5iv0.932.373.193 (3)147
C9—H9A···O3v0.932.383.272 (3)161
C6—H6B···Cg1iii0.962.993.623 (2)12
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O6i0.961.752.707 (2)175
N2—H1N2⋯O7i0.981.932.907 (2)173
N2—H2N2⋯O1ii0.952.252.974 (2)133
N2—H2N2⋯O2ii0.952.233.089 (2)151
O1—H1O1⋯O70.991.602.426 (2)138
C2—H2A⋯O2ii0.932.543.300 (3)139
C4—H4A⋯O6iii0.932.533.447 (3)169
C5—H5A⋯O5iv0.932.373.193 (3)147
C9—H9A⋯O3v0.932.383.272 (3)161
C6—H6BCg1iii0.962.993.623 (2)12

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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