Literature DB >> 21588447

2-Amino-5-bromo-pyridinium 2-hy-droxy-benzoate.

Ching Kheng Quah1, Madhukar Hemamalini, Hoong-Kun Fun.   

Abstract

In the title compound, C(5)H(6)BrN(2) (+)·C(7)H(5)O(3) (-), the 2-amino-5-bromo-pyridinium cation and 2-hy-droxy-benzoate anion are essentially planar with maximum deviations of 0.020 (1) and 0.018 (2) Å, respectively. The anion is stabilized by an intra-molecular O-H⋯O hydrogen bond, which generates an S(6) ring motif. In the crystal, the cations and anions are linked by N-H⋯O hydrogen bonds into chains propagating along [010]. The chains contain R(2) (2)(8) ring motifs. The structure is further stabilized by π-π stacking inter-actions [centroid-centroid distances = 3.4908 (10) and 3.5927 (10) Å] and also features short Br⋯O contacts [2.9671 (13) Å].

Entities:  

Year:  2010        PMID: 21588447      PMCID: PMC3007284          DOI: 10.1107/S1600536810029855

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of non-covalent inter­actions, see: Remenar et al. (2003 ▶); Sokolov et al. (2006 ▶). For the importance of salicylic acid, see: Sticher et al. (1997 ▶); Rairdan & Delaney (2002 ▶); Nawrath & Métraux (1999 ▶); Wildermuth et al. (2001 ▶). For related structures, see: Quah et al. (2008 ▶, 2010a ▶,b ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C5H6BrN2C7H5O3 M = 311.14 Monoclinic, a = 8.9498 (2) Å b = 10.8673 (2) Å c = 13.1277 (3) Å β = 108.704 (1)° V = 1209.37 (4) Å3 Z = 4 Mo Kα radiation μ = 3.40 mm−1 T = 100 K 0.48 × 0.27 × 0.19 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.291, T max = 0.572 13299 measured reflections 3559 independent reflections 2942 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.070 S = 1.12 3559 reflections 179 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.62 e Å−3 Δρmin = −0.48 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810029855/ci5140sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810029855/ci5140Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H6BrN2+·C7H5O3F(000) = 624
Mr = 311.14Dx = 1.709 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6239 reflections
a = 8.9498 (2) Åθ = 2.4–30.1°
b = 10.8673 (2) ŵ = 3.40 mm1
c = 13.1277 (3) ÅT = 100 K
β = 108.704 (1)°Block, yellow
V = 1209.37 (4) Å30.48 × 0.27 × 0.19 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3559 independent reflections
Radiation source: fine-focus sealed tube2942 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 30.1°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→12
Tmin = 0.291, Tmax = 0.572k = −12→15
13299 measured reflectionsl = −17→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.070H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.0315P)2 + 0.5751P] where P = (Fo2 + 2Fc2)/3
3559 reflections(Δ/σ)max = 0.001
179 parametersΔρmax = 0.62 e Å3
0 restraintsΔρmin = −0.48 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O30.88434 (14)0.35437 (12)0.92381 (10)0.0225 (3)
O20.98836 (15)0.30956 (12)1.09830 (10)0.0237 (3)
O11.18787 (16)0.14189 (12)1.16207 (10)0.0235 (3)
C111.07156 (18)0.19199 (15)0.97440 (13)0.0161 (3)
C61.1749 (2)0.12215 (15)1.05740 (13)0.0189 (3)
C101.06367 (18)0.16877 (16)0.86826 (13)0.0181 (3)
H100.99570.21490.81300.022*
C91.1556 (2)0.07793 (17)0.84408 (14)0.0215 (3)
H91.14890.06250.77310.026*
C120.97397 (19)0.29196 (16)0.99973 (13)0.0178 (3)
C81.2582 (2)0.00999 (18)0.92745 (15)0.0257 (4)
H81.3207−0.05070.91170.031*
C71.2685 (2)0.03150 (17)1.03343 (14)0.0244 (4)
H71.3377−0.01431.08840.029*
H1O11.121 (3)0.204 (3)1.158 (2)0.049 (8)*
Br10.370641 (18)0.746039 (15)0.758163 (13)0.01948 (6)
C50.71709 (18)0.56266 (15)1.06422 (13)0.0164 (3)
C10.61778 (19)0.58819 (16)0.87434 (13)0.0178 (3)
H10.62200.56620.80690.021*
N20.81671 (17)0.50520 (14)1.14774 (12)0.0196 (3)
N10.71750 (16)0.53391 (13)0.96389 (11)0.0169 (3)
C30.5063 (2)0.70608 (16)0.98575 (14)0.0191 (3)
H30.43330.76370.99260.023*
C20.51201 (18)0.67430 (15)0.88258 (13)0.0174 (3)
C40.60740 (19)0.65257 (16)1.07473 (13)0.0192 (3)
H40.60500.67471.14260.023*
H1N0.784 (3)0.468 (2)0.9560 (19)0.038 (7)*
H1N20.878 (3)0.452 (2)1.1347 (17)0.027 (6)*
H2N20.820 (2)0.5260 (19)1.2082 (18)0.021 (5)*
U11U22U33U12U13U23
O30.0232 (6)0.0249 (6)0.0173 (6)0.0073 (5)0.0036 (5)−0.0019 (5)
O20.0309 (6)0.0257 (7)0.0153 (6)0.0064 (5)0.0085 (5)−0.0012 (5)
O10.0318 (7)0.0240 (7)0.0143 (6)0.0055 (5)0.0070 (5)0.0035 (5)
C110.0163 (7)0.0153 (8)0.0166 (7)−0.0016 (6)0.0053 (6)−0.0021 (6)
C60.0236 (8)0.0165 (8)0.0166 (8)−0.0021 (6)0.0063 (6)0.0006 (6)
C100.0181 (7)0.0187 (8)0.0158 (7)0.0003 (6)0.0031 (6)−0.0003 (6)
C90.0247 (8)0.0235 (9)0.0165 (8)0.0025 (7)0.0067 (6)−0.0026 (7)
C120.0173 (7)0.0184 (7)0.0175 (8)−0.0007 (6)0.0052 (6)−0.0021 (6)
C80.0322 (9)0.0220 (9)0.0237 (9)0.0087 (7)0.0100 (8)−0.0008 (7)
C70.0307 (9)0.0210 (9)0.0196 (8)0.0077 (7)0.0054 (7)0.0048 (7)
Br10.02043 (9)0.01984 (10)0.01686 (9)0.00136 (6)0.00414 (6)0.00213 (6)
C50.0174 (7)0.0165 (7)0.0153 (7)−0.0037 (6)0.0051 (6)−0.0022 (6)
C10.0194 (7)0.0205 (8)0.0140 (7)−0.0023 (6)0.0059 (6)−0.0012 (6)
N20.0209 (7)0.0213 (7)0.0158 (7)0.0039 (6)0.0048 (6)−0.0009 (6)
N10.0184 (6)0.0178 (7)0.0145 (6)0.0003 (5)0.0054 (5)−0.0016 (5)
C30.0203 (7)0.0183 (8)0.0207 (8)0.0018 (6)0.0094 (6)−0.0004 (7)
C20.0172 (7)0.0175 (8)0.0161 (7)−0.0002 (6)0.0035 (6)0.0010 (6)
C40.0216 (7)0.0193 (8)0.0175 (8)−0.0004 (6)0.0073 (6)−0.0029 (6)
O3—C121.259 (2)Br1—C21.8844 (16)
O2—C121.273 (2)C5—N21.327 (2)
O1—C61.358 (2)C5—N11.355 (2)
O1—H1O10.89 (3)C5—C41.423 (2)
C11—C101.395 (2)C1—C21.360 (2)
C11—C61.404 (2)C1—N11.361 (2)
C11—C121.497 (2)C1—H10.93
C6—C71.393 (2)N2—H1N20.86 (2)
C10—C91.386 (2)N2—H2N20.82 (2)
C10—H100.93N1—H1N0.96 (2)
C9—C81.393 (2)C3—C41.358 (2)
C9—H90.93C3—C21.414 (2)
C8—C71.384 (3)C3—H30.93
C8—H80.93C4—H40.93
C7—H70.93
C6—O1—H1O1102.4 (18)N2—C5—N1118.96 (15)
C10—C11—C6119.14 (15)N2—C5—C4123.01 (15)
C10—C11—C12120.45 (15)N1—C5—C4118.02 (15)
C6—C11—C12120.40 (15)C2—C1—N1120.65 (15)
O1—C6—C7118.53 (15)C2—C1—H1119.7
O1—C6—C11121.39 (15)N1—C1—H1119.7
C7—C6—C11120.07 (15)C5—N2—H1N2117.4 (14)
C9—C10—C11120.93 (15)C5—N2—H2N2118.5 (15)
C9—C10—H10119.5H1N2—N2—H2N2124 (2)
C11—C10—H10119.5C5—N1—C1122.29 (15)
C10—C9—C8119.19 (16)C5—N1—H1N118.3 (14)
C10—C9—H9120.4C1—N1—H1N119.2 (14)
C8—C9—H9120.4C4—C3—C2120.04 (15)
O3—C12—O2123.71 (16)C4—C3—H3120.0
O3—C12—C11118.98 (15)C2—C3—H3120.0
O2—C12—C11117.31 (15)C1—C2—C3118.94 (15)
C7—C8—C9120.98 (17)C1—C2—Br1120.45 (12)
C7—C8—H8119.5C3—C2—Br1120.58 (12)
C9—C8—H8119.5C3—C4—C5120.05 (15)
C8—C7—C6119.69 (16)C3—C4—H4120.0
C8—C7—H7120.2C5—C4—H4120.0
C6—C7—H7120.2
C10—C11—C6—O1179.45 (15)O1—C6—C7—C8−179.66 (17)
C12—C11—C6—O10.9 (2)C11—C6—C7—C8−0.5 (3)
C10—C11—C6—C70.3 (2)N2—C5—N1—C1179.40 (15)
C12—C11—C6—C7−178.24 (16)C4—C5—N1—C10.2 (2)
C6—C11—C10—C90.2 (2)C2—C1—N1—C5−0.3 (2)
C12—C11—C10—C9178.82 (16)N1—C1—C2—C3−0.5 (2)
C11—C10—C9—C8−0.6 (3)N1—C1—C2—Br1−178.37 (12)
C10—C11—C12—O30.3 (2)C4—C3—C2—C11.2 (3)
C6—C11—C12—O3178.84 (15)C4—C3—C2—Br1179.13 (13)
C10—C11—C12—O2−179.02 (15)C2—C3—C4—C5−1.3 (3)
C6—C11—C12—O2−0.4 (2)N2—C5—C4—C3−178.60 (16)
C10—C9—C8—C70.4 (3)N1—C5—C4—C30.5 (2)
C9—C8—C7—C60.1 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1O1···O20.89 (3)1.66 (3)2.500 (2)157 (2)
N1—H1N···O30.96 (2)1.66 (2)2.611 (2)172 (2)
N2—H1N2···O20.85 (3)1.98 (2)2.818 (2)170 (2)
N2—H2N2···O1i0.82 (2)2.14 (2)2.917 (2)160 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯O20.89 (3)1.66 (3)2.500 (2)157 (2)
N1—H1N⋯O30.96 (2)1.66 (2)2.611 (2)172 (2)
N2—H1N2⋯O20.85 (3)1.98 (2)2.818 (2)170 (2)
N2—H2N2⋯O1i0.82 (2)2.14 (2)2.917 (2)160 (2)

Symmetry code: (i) .

  11 in total

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4.  Isochorismate synthase is required to synthesize salicylic acid for plant defence.

Authors:  M C Wildermuth; J Dewdney; G Wu; F M Ausubel
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5.  Salicylic acid induction-deficient mutants of Arabidopsis express PR-2 and PR-5 and accumulate high levels of camalexin after pathogen inoculation.

Authors:  C Nawrath; J P Métraux
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6.  Crystal engineering of novel cocrystals of a triazole drug with 1,4-dicarboxylic acids.

Authors:  Julius F Remenar; Sherry L Morissette; Matthew L Peterson; Brian Moulton; J Michael MacPhee; Héctor R Guzmán; Orn Almarsson
Journal:  J Am Chem Soc       Date:  2003-07-16       Impact factor: 15.419

7.  4-Amino-pyridinium 4-nitro-benzoate 4-nitro-benzoic acid.

Authors:  Ching Kheng Quah; Samuel Robinson Jebas; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-06

8.  Role of salicylic acid and NIM1/NPR1 in race-specific resistance in arabidopsis.

Authors:  Gregory J Rairdan; Terrence P Delaney
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9.  2-Amino-5-bromo-pyridine-4-hy-droxy-benzoic acid (1/1).

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

10.  Structure validation in chemical crystallography.

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4.  2-Amino-5-bromo-pyridinium 5-chloro-2-hy-droxy-benzoate.

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