| Literature DB >> 21588447 |
Ching Kheng Quah1, Madhukar Hemamalini, Hoong-Kun Fun.
Abstract
In the title compound, C(5)H(6)BrN(2) (+)·C(7)H(5)O(3) (-), the 2-amino-5-bromo-pyridinium cation and 2-hy-droxy-benzoate anion are essentially planar with maximum deviations of 0.020 (1) and 0.018 (2) Å, respectively. The anion is stabilized by an intra-molecular O-H⋯O hydrogen bond, which generates an S(6) ring motif. In the crystal, the cations and anions are linked by N-H⋯O hydrogen bonds into chains propagating along [010]. The chains contain R(2) (2)(8) ring motifs. The structure is further stabilized by π-π stacking inter-actions [centroid-centroid distances = 3.4908 (10) and 3.5927 (10) Å] and also features short Br⋯O contacts [2.9671 (13) Å].Entities:
Year: 2010 PMID: 21588447 PMCID: PMC3007284 DOI: 10.1107/S1600536810029855
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H6BrN2+·C7H5O3− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 6239 reflections |
| θ = 2.4–30.1° | |
| µ = 3.40 mm−1 | |
| β = 108.704 (1)° | Block, yellow |
| 0.48 × 0.27 × 0.19 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 3559 independent reflections |
| Radiation source: fine-focus sealed tube | 2942 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.1°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 13299 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3559 reflections | (Δ/σ)max = 0.001 |
| 179 parameters | Δρmax = 0.62 e Å−3 |
| 0 restraints | Δρmin = −0.48 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O3 | 0.88434 (14) | 0.35437 (12) | 0.92381 (10) | 0.0225 (3) | |
| O2 | 0.98836 (15) | 0.30956 (12) | 1.09830 (10) | 0.0237 (3) | |
| O1 | 1.18787 (16) | 0.14189 (12) | 1.16207 (10) | 0.0235 (3) | |
| C11 | 1.07156 (18) | 0.19199 (15) | 0.97440 (13) | 0.0161 (3) | |
| C6 | 1.1749 (2) | 0.12215 (15) | 1.05740 (13) | 0.0189 (3) | |
| C10 | 1.06367 (18) | 0.16877 (16) | 0.86826 (13) | 0.0181 (3) | |
| H10 | 0.9957 | 0.2149 | 0.8130 | 0.022* | |
| C9 | 1.1556 (2) | 0.07793 (17) | 0.84408 (14) | 0.0215 (3) | |
| H9 | 1.1489 | 0.0625 | 0.7731 | 0.026* | |
| C12 | 0.97397 (19) | 0.29196 (16) | 0.99973 (13) | 0.0178 (3) | |
| C8 | 1.2582 (2) | 0.00999 (18) | 0.92745 (15) | 0.0257 (4) | |
| H8 | 1.3207 | −0.0507 | 0.9117 | 0.031* | |
| C7 | 1.2685 (2) | 0.03150 (17) | 1.03343 (14) | 0.0244 (4) | |
| H7 | 1.3377 | −0.0143 | 1.0884 | 0.029* | |
| H1O1 | 1.121 (3) | 0.204 (3) | 1.158 (2) | 0.049 (8)* | |
| Br1 | 0.370641 (18) | 0.746039 (15) | 0.758163 (13) | 0.01948 (6) | |
| C5 | 0.71709 (18) | 0.56266 (15) | 1.06422 (13) | 0.0164 (3) | |
| C1 | 0.61778 (19) | 0.58819 (16) | 0.87434 (13) | 0.0178 (3) | |
| H1 | 0.6220 | 0.5662 | 0.8069 | 0.021* | |
| N2 | 0.81671 (17) | 0.50520 (14) | 1.14774 (12) | 0.0196 (3) | |
| N1 | 0.71750 (16) | 0.53391 (13) | 0.96389 (11) | 0.0169 (3) | |
| C3 | 0.5063 (2) | 0.70608 (16) | 0.98575 (14) | 0.0191 (3) | |
| H3 | 0.4333 | 0.7637 | 0.9926 | 0.023* | |
| C2 | 0.51201 (18) | 0.67430 (15) | 0.88258 (13) | 0.0174 (3) | |
| C4 | 0.60740 (19) | 0.65257 (16) | 1.07473 (13) | 0.0192 (3) | |
| H4 | 0.6050 | 0.6747 | 1.1426 | 0.023* | |
| H1N | 0.784 (3) | 0.468 (2) | 0.9560 (19) | 0.038 (7)* | |
| H1N2 | 0.878 (3) | 0.452 (2) | 1.1347 (17) | 0.027 (6)* | |
| H2N2 | 0.820 (2) | 0.5260 (19) | 1.2082 (18) | 0.021 (5)* |
| O3 | 0.0232 (6) | 0.0249 (6) | 0.0173 (6) | 0.0073 (5) | 0.0036 (5) | −0.0019 (5) |
| O2 | 0.0309 (6) | 0.0257 (7) | 0.0153 (6) | 0.0064 (5) | 0.0085 (5) | −0.0012 (5) |
| O1 | 0.0318 (7) | 0.0240 (7) | 0.0143 (6) | 0.0055 (5) | 0.0070 (5) | 0.0035 (5) |
| C11 | 0.0163 (7) | 0.0153 (8) | 0.0166 (7) | −0.0016 (6) | 0.0053 (6) | −0.0021 (6) |
| C6 | 0.0236 (8) | 0.0165 (8) | 0.0166 (8) | −0.0021 (6) | 0.0063 (6) | 0.0006 (6) |
| C10 | 0.0181 (7) | 0.0187 (8) | 0.0158 (7) | 0.0003 (6) | 0.0031 (6) | −0.0003 (6) |
| C9 | 0.0247 (8) | 0.0235 (9) | 0.0165 (8) | 0.0025 (7) | 0.0067 (6) | −0.0026 (7) |
| C12 | 0.0173 (7) | 0.0184 (7) | 0.0175 (8) | −0.0007 (6) | 0.0052 (6) | −0.0021 (6) |
| C8 | 0.0322 (9) | 0.0220 (9) | 0.0237 (9) | 0.0087 (7) | 0.0100 (8) | −0.0008 (7) |
| C7 | 0.0307 (9) | 0.0210 (9) | 0.0196 (8) | 0.0077 (7) | 0.0054 (7) | 0.0048 (7) |
| Br1 | 0.02043 (9) | 0.01984 (10) | 0.01686 (9) | 0.00136 (6) | 0.00414 (6) | 0.00213 (6) |
| C5 | 0.0174 (7) | 0.0165 (7) | 0.0153 (7) | −0.0037 (6) | 0.0051 (6) | −0.0022 (6) |
| C1 | 0.0194 (7) | 0.0205 (8) | 0.0140 (7) | −0.0023 (6) | 0.0059 (6) | −0.0012 (6) |
| N2 | 0.0209 (7) | 0.0213 (7) | 0.0158 (7) | 0.0039 (6) | 0.0048 (6) | −0.0009 (6) |
| N1 | 0.0184 (6) | 0.0178 (7) | 0.0145 (6) | 0.0003 (5) | 0.0054 (5) | −0.0016 (5) |
| C3 | 0.0203 (7) | 0.0183 (8) | 0.0207 (8) | 0.0018 (6) | 0.0094 (6) | −0.0004 (7) |
| C2 | 0.0172 (7) | 0.0175 (8) | 0.0161 (7) | −0.0002 (6) | 0.0035 (6) | 0.0010 (6) |
| C4 | 0.0216 (7) | 0.0193 (8) | 0.0175 (8) | −0.0004 (6) | 0.0073 (6) | −0.0029 (6) |
| O3—C12 | 1.259 (2) | Br1—C2 | 1.8844 (16) |
| O2—C12 | 1.273 (2) | C5—N2 | 1.327 (2) |
| O1—C6 | 1.358 (2) | C5—N1 | 1.355 (2) |
| O1—H1O1 | 0.89 (3) | C5—C4 | 1.423 (2) |
| C11—C10 | 1.395 (2) | C1—C2 | 1.360 (2) |
| C11—C6 | 1.404 (2) | C1—N1 | 1.361 (2) |
| C11—C12 | 1.497 (2) | C1—H1 | 0.93 |
| C6—C7 | 1.393 (2) | N2—H1N2 | 0.86 (2) |
| C10—C9 | 1.386 (2) | N2—H2N2 | 0.82 (2) |
| C10—H10 | 0.93 | N1—H1N | 0.96 (2) |
| C9—C8 | 1.393 (2) | C3—C4 | 1.358 (2) |
| C9—H9 | 0.93 | C3—C2 | 1.414 (2) |
| C8—C7 | 1.384 (3) | C3—H3 | 0.93 |
| C8—H8 | 0.93 | C4—H4 | 0.93 |
| C7—H7 | 0.93 | ||
| C6—O1—H1O1 | 102.4 (18) | N2—C5—N1 | 118.96 (15) |
| C10—C11—C6 | 119.14 (15) | N2—C5—C4 | 123.01 (15) |
| C10—C11—C12 | 120.45 (15) | N1—C5—C4 | 118.02 (15) |
| C6—C11—C12 | 120.40 (15) | C2—C1—N1 | 120.65 (15) |
| O1—C6—C7 | 118.53 (15) | C2—C1—H1 | 119.7 |
| O1—C6—C11 | 121.39 (15) | N1—C1—H1 | 119.7 |
| C7—C6—C11 | 120.07 (15) | C5—N2—H1N2 | 117.4 (14) |
| C9—C10—C11 | 120.93 (15) | C5—N2—H2N2 | 118.5 (15) |
| C9—C10—H10 | 119.5 | H1N2—N2—H2N2 | 124 (2) |
| C11—C10—H10 | 119.5 | C5—N1—C1 | 122.29 (15) |
| C10—C9—C8 | 119.19 (16) | C5—N1—H1N | 118.3 (14) |
| C10—C9—H9 | 120.4 | C1—N1—H1N | 119.2 (14) |
| C8—C9—H9 | 120.4 | C4—C3—C2 | 120.04 (15) |
| O3—C12—O2 | 123.71 (16) | C4—C3—H3 | 120.0 |
| O3—C12—C11 | 118.98 (15) | C2—C3—H3 | 120.0 |
| O2—C12—C11 | 117.31 (15) | C1—C2—C3 | 118.94 (15) |
| C7—C8—C9 | 120.98 (17) | C1—C2—Br1 | 120.45 (12) |
| C7—C8—H8 | 119.5 | C3—C2—Br1 | 120.58 (12) |
| C9—C8—H8 | 119.5 | C3—C4—C5 | 120.05 (15) |
| C8—C7—C6 | 119.69 (16) | C3—C4—H4 | 120.0 |
| C8—C7—H7 | 120.2 | C5—C4—H4 | 120.0 |
| C6—C7—H7 | 120.2 | ||
| C10—C11—C6—O1 | 179.45 (15) | O1—C6—C7—C8 | −179.66 (17) |
| C12—C11—C6—O1 | 0.9 (2) | C11—C6—C7—C8 | −0.5 (3) |
| C10—C11—C6—C7 | 0.3 (2) | N2—C5—N1—C1 | 179.40 (15) |
| C12—C11—C6—C7 | −178.24 (16) | C4—C5—N1—C1 | 0.2 (2) |
| C6—C11—C10—C9 | 0.2 (2) | C2—C1—N1—C5 | −0.3 (2) |
| C12—C11—C10—C9 | 178.82 (16) | N1—C1—C2—C3 | −0.5 (2) |
| C11—C10—C9—C8 | −0.6 (3) | N1—C1—C2—Br1 | −178.37 (12) |
| C10—C11—C12—O3 | 0.3 (2) | C4—C3—C2—C1 | 1.2 (3) |
| C6—C11—C12—O3 | 178.84 (15) | C4—C3—C2—Br1 | 179.13 (13) |
| C10—C11—C12—O2 | −179.02 (15) | C2—C3—C4—C5 | −1.3 (3) |
| C6—C11—C12—O2 | −0.4 (2) | N2—C5—C4—C3 | −178.60 (16) |
| C10—C9—C8—C7 | 0.4 (3) | N1—C5—C4—C3 | 0.5 (2) |
| C9—C8—C7—C6 | 0.1 (3) |
| H··· | ||||
| O1—H1O1···O2 | 0.89 (3) | 1.66 (3) | 2.500 (2) | 157 (2) |
| N1—H1N···O3 | 0.96 (2) | 1.66 (2) | 2.611 (2) | 172 (2) |
| N2—H1N2···O2 | 0.85 (3) | 1.98 (2) | 2.818 (2) | 170 (2) |
| N2—H2N2···O1i | 0.82 (2) | 2.14 (2) | 2.917 (2) | 160 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.89 (3) | 1.66 (3) | 2.500 (2) | 157 (2) |
| N1—H1 | 0.96 (2) | 1.66 (2) | 2.611 (2) | 172 (2) |
| N2—H1 | 0.85 (3) | 1.98 (2) | 2.818 (2) | 170 (2) |
| N2—H2 | 0.82 (2) | 2.14 (2) | 2.917 (2) | 160 (2) |
Symmetry code: (i) .