Literature DB >> 21588616

Bis(2-amino-5-bromo-pyridinium) fumarate dihydrate.

Ching Kheng Quah1, Madhukar Hemamalini, Hoong-Kun Fun.   

Abstract

In the title compound, 2C(5)H(6)BrN(2) (+)·C(4)H(2)O(4) (2-)·2H(2)O, the complete fumarate dianion is generated by crystallographic inversion symmetry. The cation is approximately planar, with a maximum deviation of 0.036 (1) Å. In the anion, the carboxyl-ate group is twisted slightly away from the attached plane; the dihedral angle between carboxyl-ate and (E)-but-2-ene planes is 6.11 (14)°. In the crystal, the carboxyl-ate O atoms form bifurcated (N-H⋯O and C-H⋯O) and N-H⋯O hydrogen bonds with the cations. The crystal packing is stabilized by R(2) (2)(8) ring motifs which are generated by pairs of N-H⋯O hydrogen bonds. The crystal structure is further consolidated by water mol-ecules via O(water)-H⋯O and N-H⋯O(water) hydrogen bonds. The components are linked by these inter-actions into three-dimensional network.

Entities:  

Year:  2010        PMID: 21588616      PMCID: PMC3007988          DOI: 10.1107/S1600536810030989

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of hydrogen bonding, see: Goswami & Ghosh (1997 ▶); Goswami et al. (1998 ▶). For applications of fumaric acid, see: Batchelor et al. (2000 ▶). For related structures, see: Büyükgüngör et al. (2004 ▶); Büyükgüngör & Odabąsoğlu (20065); Hemamalini & Fun, (2010); Quah et al. (2008 ▶; 2010). For bond-length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

2C5H6BrN2C4H2O4 2−·H2O M = 498.14 Monoclinic, a = 8.3717 (1) Å b = 16.5354 (2) Å c = 6.7846 (1) Å β = 108.336 (1)° V = 891.50 (2) Å3 Z = 2 Mo Kα radiation μ = 4.59 mm−1 T = 100 K 0.39 × 0.15 × 0.12 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.271, T max = 0.618 15040 measured reflections 3942 independent reflections 3252 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.059 S = 1.03 3942 reflections 138 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.54 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810030989/bt5312sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030989/bt5312Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C5H6BrN2+·C4H2O42·2H2OF(000) = 496
Mr = 498.14Dx = 1.856 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5779 reflections
a = 8.3717 (1) Åθ = 2.6–34.6°
b = 16.5354 (2) ŵ = 4.59 mm1
c = 6.7846 (1) ÅT = 100 K
β = 108.336 (1)°Block, colourless
V = 891.50 (2) Å30.39 × 0.15 × 0.12 mm
Z = 2
Bruker SMART APEXII CCD area-detector diffractometer3942 independent reflections
Radiation source: fine-focus sealed tube3252 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 35.2°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −13→12
Tmin = 0.271, Tmax = 0.618k = −26→23
15040 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.059H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0265P)2 + 0.2048P] where P = (Fo2 + 2Fc2)/3
3942 reflections(Δ/σ)max = 0.001
138 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = −0.39 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.741696 (15)1.042853 (7)0.08809 (2)0.01677 (4)
N10.78272 (13)0.79718 (7)0.17705 (16)0.01325 (19)
H1N10.712 (2)0.7551 (11)0.133 (3)0.022 (4)*
N20.99471 (14)0.70859 (7)0.34946 (18)0.0152 (2)
H2N21.091 (3)0.7028 (12)0.426 (3)0.031 (5)*
H1N20.926 (2)0.6673 (12)0.296 (3)0.036 (5)*
C10.72188 (15)0.87250 (8)0.11482 (19)0.0142 (2)
H1A0.61120.87900.03010.017*
C20.82285 (16)0.93842 (8)0.1764 (2)0.0139 (2)
C30.99045 (15)0.92827 (8)0.3065 (2)0.0148 (2)
H3A1.06060.97290.34860.018*
C41.04836 (15)0.85246 (8)0.36957 (19)0.0144 (2)
H4A1.15750.84550.45850.017*
C50.94285 (15)0.78397 (8)0.30010 (18)0.0127 (2)
O1W0.34331 (12)0.71054 (7)0.61811 (17)0.0206 (2)
H2W10.392 (3)0.6972 (13)0.729 (3)0.038 (6)*
H1W10.396 (3)0.7487 (15)0.594 (4)0.043 (6)*
O10.55652 (11)0.67725 (5)0.02333 (15)0.01630 (18)
O20.75988 (11)0.58655 (6)0.15601 (16)0.01766 (18)
C60.48381 (16)0.53893 (7)−0.0202 (2)0.0139 (2)
H6AA0.37630.5537−0.10260.017*
C70.61164 (15)0.60438 (7)0.06033 (19)0.0127 (2)
U11U22U33U12U13U23
Br10.01516 (6)0.01024 (6)0.02259 (7)0.00028 (4)0.00262 (4)0.00195 (5)
N10.0112 (4)0.0107 (5)0.0165 (5)−0.0015 (4)0.0023 (4)−0.0004 (4)
N20.0124 (5)0.0108 (5)0.0201 (5)−0.0002 (4)0.0017 (4)0.0006 (4)
C10.0128 (5)0.0124 (5)0.0161 (5)0.0000 (4)0.0027 (4)0.0010 (4)
C20.0137 (5)0.0103 (5)0.0170 (5)0.0005 (4)0.0040 (4)0.0008 (4)
C30.0129 (5)0.0123 (5)0.0182 (6)−0.0025 (4)0.0035 (4)−0.0017 (4)
C40.0117 (5)0.0129 (6)0.0162 (5)−0.0016 (4)0.0011 (4)−0.0019 (4)
C50.0111 (5)0.0128 (5)0.0139 (5)−0.0003 (4)0.0036 (4)−0.0005 (4)
O1W0.0163 (5)0.0189 (5)0.0221 (5)−0.0039 (4)−0.0003 (4)0.0050 (4)
O10.0134 (4)0.0097 (4)0.0228 (5)0.0004 (3)0.0014 (3)−0.0001 (3)
O20.0120 (4)0.0126 (4)0.0245 (5)0.0001 (3)0.0002 (3)−0.0001 (4)
C60.0112 (5)0.0111 (5)0.0176 (5)−0.0005 (4)0.0016 (4)−0.0011 (4)
C70.0130 (5)0.0105 (5)0.0138 (5)−0.0010 (4)0.0030 (4)−0.0001 (4)
Br1—C21.8832 (13)C3—H3A0.9300
N1—C51.3556 (15)C4—C51.4223 (17)
N1—C11.3616 (16)C4—H4A0.9300
N1—H1N10.899 (18)O1W—H2W10.77 (2)
N2—C51.3278 (16)O1W—H1W10.81 (2)
N2—H2N20.81 (2)O1—C71.2863 (15)
N2—H1N20.89 (2)O2—C71.2416 (14)
C1—C21.3620 (17)C6—C6i1.326 (2)
C1—H1A0.9300C6—C71.4990 (17)
C2—C31.4130 (17)C6—H6AA0.9300
C3—C41.3635 (18)
C5—N1—C1122.64 (11)C2—C3—H3A120.3
C5—N1—H1N1119.8 (11)C3—C4—C5120.37 (11)
C1—N1—H1N1117.5 (12)C3—C4—H4A119.8
C5—N2—H2N2116.7 (14)C5—C4—H4A119.8
C5—N2—H1N2119.8 (13)N2—C5—N1119.22 (11)
H2N2—N2—H1N2123.4 (19)N2—C5—C4122.97 (11)
N1—C1—C2120.10 (11)N1—C5—C4117.81 (11)
N1—C1—H1A119.9H2W1—O1W—H1W1105 (2)
C2—C1—H1A120.0C6i—C6—C7123.34 (14)
C1—C2—C3119.67 (12)C6i—C6—H6AA118.3
C1—C2—Br1120.62 (9)C7—C6—H6AA118.3
C3—C2—Br1119.71 (9)O2—C7—O1124.24 (11)
C4—C3—C2119.37 (11)O2—C7—C6120.03 (11)
C4—C3—H3A120.3O1—C7—C6115.72 (11)
C5—N1—C1—C2−0.12 (18)C1—N1—C5—N2−178.04 (12)
N1—C1—C2—C3−0.51 (19)C1—N1—C5—C41.59 (17)
N1—C1—C2—Br1178.98 (9)C3—C4—C5—N2177.11 (13)
C1—C2—C3—C4−0.42 (19)C3—C4—C5—N1−2.50 (18)
Br1—C2—C3—C4−179.92 (10)C6i—C6—C7—O26.0 (2)
C2—C3—C4—C51.93 (19)C6i—C6—C7—O1−173.89 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O10.902 (18)1.815 (18)2.7136 (14)174.1 (19)
N2—H2N2···O1Wii0.82 (2)2.11 (2)2.9143 (16)169.7 (19)
N2—H1N2···O20.893 (19)1.946 (19)2.8348 (15)173.2 (19)
O1W—H2W1···O1iii0.77 (2)2.07 (2)2.8213 (15)169 (2)
O1W—H1W1···O1iv0.82 (3)1.99 (3)2.7865 (14)167 (3)
C3—H3A···O2v0.932.413.3089 (17)162.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O10.902 (18)1.815 (18)2.7136 (14)174.1 (19)
N2—H2N2⋯O1Wi0.82 (2)2.11 (2)2.9143 (16)169.7 (19)
N2—H1N2⋯O20.893 (19)1.946 (19)2.8348 (15)173.2 (19)
O1W—H2W1⋯O1ii0.77 (2)2.07 (2)2.8213 (15)169 (2)
O1W—H1W1⋯O1iii0.82 (3)1.99 (3)2.7865 (14)167 (3)
C3—H3A⋯O2iv0.932.413.3089 (17)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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