Literature DB >> 21588615

Bis(4-amino-pyridinium) sulfate monohydrate.

Ching Kheng Quah, Hoong-Kun Fun, Arun M Isloor, Nishitha Isloor.   

Abstract

The asymmetric unit of the title compound, 2C(5)H(7)N(2) (+)·SO(4) (2-)·H(2)O, contains two 4-amino-pyridinium cations (A and B), a sulfate dianion and a water mol-ecule. One of the 4-amino-pyridinium cations (B) is disordered over two orientations with refined site occupancies of 0.568 (4) and 0.432 (4). The non-H atoms of the 4-amino-pyridinium cations are essentially coplanar, with a maximum deviation of 0.055 (1) Å (in cation A), 0.022 (3) Å (for the major component in cation B) and 0.009 (3) Å (for the minor component in cation B). In the crystal, the sulfate O atoms link the 4-amino-pyridinium cations and water mol-ecules into a three-dimensional network via inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds. The crystal structure is further consolidated by N-H⋯O(water) and C-H⋯O(water) hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588615      PMCID: PMC3007857          DOI: 10.1107/S1600536810030941

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the applications of the title compound, see: Judge & Bever (2006 ▶); Schwid et al. (1997 ▶); Strupp et al. (2004 ▶); Onoda et al. (2001 ▶); Zhang et al. (2004 ▶); Pflugrath & Quiocho, (1985 ▶); Jacobson & Quiocho (1988 ▶). For related structures, see: Quah et al. (2008a ▶,b ▶, 2010 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

2C5H7N2 +·SO4 2−·H2O M = 304.33 Triclinic, a = 6.4434 (1) Å b = 8.4153 (1) Å c = 12.4488 (2) Å α = 96.365 (1)° β = 97.534 (1)° γ = 95.387 (1)° V = 661.02 (2) Å3 Z = 2 Mo Kα radiation μ = 0.27 mm−1 T = 100 K 0.33 × 0.25 × 0.07 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.916, T max = 0.981 10717 measured reflections 3839 independent reflections 3279 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.106 S = 1.06 3839 reflections 259 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.59 e Å−3 Δρmin = −0.55 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810030941/bt5310sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030941/bt5310Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C5H7N2+·SO42·H2OZ = 2
Mr = 304.33F(000) = 320
Triclinic, P1Dx = 1.529 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.4434 (1) ÅCell parameters from 3597 reflections
b = 8.4153 (1) Åθ = 3.1–30.1°
c = 12.4488 (2) ŵ = 0.27 mm1
α = 96.365 (1)°T = 100 K
β = 97.534 (1)°Plate, colourless
γ = 95.387 (1)°0.33 × 0.25 × 0.07 mm
V = 661.02 (2) Å3
Bruker SMART APEXII CCD area-detector diffractometer3839 independent reflections
Radiation source: fine-focus sealed tube3279 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 30.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.916, Tmax = 0.981k = −11→11
10717 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0441P)2 + 0.4122P] where P = (Fo2 + 2Fc2)/3
3839 reflections(Δ/σ)max < 0.001
259 parametersΔρmax = 0.59 e Å3
0 restraintsΔρmin = −0.55 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.41695 (5)0.12500 (4)0.29301 (3)0.01520 (10)
O40.28974 (17)0.13054 (13)0.38487 (9)0.0210 (2)
O30.52927 (17)0.28476 (13)0.29263 (10)0.0217 (2)
O20.56565 (18)0.00390 (14)0.30613 (10)0.0256 (3)
O10.27120 (18)0.08095 (15)0.18901 (10)0.0277 (3)
N2−0.0310 (2)0.34101 (15)0.35023 (11)0.0172 (2)
C50.2971 (2)0.72142 (18)0.42897 (12)0.0182 (3)
H5A0.43730.76070.45270.022*
N10.1519 (2)0.82613 (16)0.41396 (11)0.0192 (3)
C30.0277 (2)0.49838 (17)0.37303 (11)0.0144 (3)
C2−0.1204 (2)0.61239 (18)0.36079 (12)0.0168 (3)
H2A−0.26250.57750.33920.020*
O1W0.8386 (2)0.96841 (16)0.15025 (14)0.0355 (3)
C40.2413 (2)0.55943 (17)0.40997 (11)0.0160 (3)
H4A0.34280.48910.42120.019*
C1−0.0540 (2)0.77280 (18)0.38069 (12)0.0189 (3)
H1A−0.15140.84670.37130.023*
C2A0.7722 (12)0.4735 (7)1.0588 (7)0.0238 (7)0.568 (4)
H2AA0.80190.53111.12820.029*0.568 (4)
C1A0.7613 (4)0.3094 (4)1.0482 (3)0.0238 (7)0.568 (4)
H1AA0.78540.25671.10970.029*0.568 (4)
C5A0.6790 (11)0.2982 (7)0.8591 (6)0.0237 (11)0.568 (4)
H5AA0.64610.23700.79100.028*0.568 (4)
C4A0.6891 (9)0.4594 (7)0.8661 (5)0.0175 (10)0.568 (4)
H4AA0.66240.50820.80300.021*0.568 (4)
N2A0.7527 (4)0.7162 (3)0.9771 (2)0.0185 (6)0.568 (4)
H2NA0.72860.75150.91600.028*0.568 (4)
H1NA0.77700.76721.03500.028*0.568 (4)
C3A0.7401 (4)0.5559 (4)0.9691 (2)0.0134 (6)0.568 (4)
N1A0.7155 (4)0.2243 (4)0.9482 (3)0.0263 (7)0.568 (4)
H1AB0.70390.12170.93500.032*0.568 (4)
N2B0.7174 (5)0.1525 (5)0.9860 (3)0.0219 (8)0.432 (4)
H1NB0.75420.11781.05000.033*0.432 (4)
H2NB0.71060.08550.93120.033*0.432 (4)
C1B0.7723 (6)0.5882 (5)1.0409 (4)0.0270 (10)0.432 (4)
H1BB0.78210.67601.08680.040*0.432 (4)
N1B0.7377 (5)0.6283 (6)0.9395 (4)0.0257 (9)0.432 (4)
H1BA0.74210.72790.92940.038*0.432 (4)
C3B0.7256 (5)0.3062 (6)0.9719 (3)0.0173 (8)0.432 (4)
C4B0.6880 (12)0.3543 (9)0.8640 (6)0.0168 (13)0.432 (4)
H4BA0.65840.27710.80300.020*0.432 (4)
C5B0.6959 (13)0.5103 (9)0.8524 (7)0.0208 (13)0.432 (4)
H5BA0.67210.54000.78240.025*0.432 (4)
C2B0.7688 (12)0.4344 (6)1.0631 (6)0.0153 (12)0.432 (4)
H2BA0.79320.41121.13470.018*0.432 (4)
H1W10.750 (5)0.985 (4)0.201 (3)0.067 (9)*
H2W10.963 (5)1.006 (3)0.172 (2)0.054 (8)*
H1N10.193 (3)0.929 (3)0.4163 (18)0.033 (6)*
H1N20.061 (4)0.275 (3)0.3623 (17)0.031 (6)*
H2N2−0.163 (3)0.309 (2)0.3310 (16)0.023 (5)*
U11U22U33U12U13U23
S10.01105 (16)0.01034 (16)0.02362 (18)0.00082 (11)0.00082 (12)0.00180 (12)
O40.0194 (5)0.0152 (5)0.0305 (6)0.0027 (4)0.0077 (4)0.0058 (4)
O30.0194 (5)0.0141 (5)0.0311 (6)−0.0032 (4)0.0040 (4)0.0044 (4)
O20.0208 (6)0.0197 (5)0.0401 (7)0.0100 (4)0.0077 (5)0.0098 (5)
O10.0191 (5)0.0286 (6)0.0303 (6)0.0024 (5)−0.0056 (5)−0.0071 (5)
N20.0142 (6)0.0140 (6)0.0232 (6)0.0016 (5)0.0031 (5)0.0004 (5)
C50.0158 (6)0.0202 (7)0.0181 (6)−0.0016 (5)0.0036 (5)0.0021 (5)
N10.0226 (6)0.0137 (6)0.0217 (6)−0.0008 (5)0.0062 (5)0.0027 (5)
C30.0158 (6)0.0156 (6)0.0123 (6)0.0011 (5)0.0036 (5)0.0026 (5)
C20.0152 (6)0.0182 (7)0.0176 (6)0.0024 (5)0.0028 (5)0.0032 (5)
O1W0.0192 (6)0.0249 (6)0.0622 (10)0.0008 (5)0.0094 (6)0.0017 (6)
C40.0145 (6)0.0175 (7)0.0163 (6)0.0025 (5)0.0024 (5)0.0029 (5)
C10.0206 (7)0.0169 (7)0.0210 (7)0.0049 (5)0.0052 (5)0.0048 (5)
C2A0.0165 (11)0.0299 (17)0.0289 (14)0.0066 (10)0.0065 (9)0.0130 (11)
C1A0.0165 (11)0.0299 (17)0.0289 (14)0.0066 (10)0.0065 (9)0.0130 (11)
C5A0.0209 (17)0.016 (3)0.0340 (19)0.003 (2)0.0088 (13)−0.005 (2)
C4A0.0193 (15)0.015 (3)0.0171 (19)0.001 (2)0.0023 (12)−0.0004 (19)
N2A0.0209 (11)0.0122 (13)0.0214 (11)0.0026 (8)0.0036 (8)−0.0034 (9)
C3A0.0089 (11)0.0152 (14)0.0161 (15)0.0024 (9)0.0029 (9)0.0000 (11)
N1A0.0228 (13)0.0104 (15)0.0475 (19)0.0020 (11)0.0117 (12)0.0029 (15)
N2B0.0266 (17)0.0202 (18)0.0188 (15)0.0024 (13)0.0015 (12)0.0037 (13)
C1B0.0173 (18)0.025 (2)0.036 (3)−0.0006 (14)0.0071 (16)−0.0072 (18)
N1B0.0165 (16)0.015 (2)0.047 (2)0.0037 (13)0.0092 (14)0.004 (2)
C3B0.0114 (15)0.020 (2)0.020 (2)0.0028 (14)0.0025 (12)0.0010 (16)
C4B0.019 (2)0.018 (4)0.016 (2)0.005 (3)0.0026 (15)0.007 (3)
C5B0.018 (2)0.017 (4)0.030 (3)0.007 (3)0.0061 (17)0.008 (2)
C2B0.0112 (16)0.029 (3)0.0062 (16)0.004 (2)0.0031 (12)0.002 (2)
S1—O31.4666 (11)C5A—N1A1.335 (9)
S1—O21.4706 (11)C5A—C4A1.345 (5)
S1—O11.4849 (12)C5A—H5AA0.9300
S1—O41.4909 (12)C4A—C3A1.422 (6)
N2—C31.3311 (18)C4A—H4AA0.9300
N2—H1N20.86 (2)N2A—C3A1.335 (4)
N2—H2N20.86 (2)N2A—H2NA0.8477
C5—N11.354 (2)N2A—H1NA0.7856
C5—C41.363 (2)N1A—H1AB0.8555
C5—H5A0.9300N2B—C3B1.321 (6)
N1—C11.355 (2)N2B—H1NB0.8900
N1—H1N10.88 (2)N2B—H2NB0.8295
C3—C41.4208 (19)C1B—N1B1.339 (6)
C3—C21.421 (2)C1B—C2B1.352 (6)
C2—C11.362 (2)C1B—H1BB0.8750
C2—H2A0.9300N1B—C5B1.367 (11)
O1W—H1W10.91 (3)N1B—H2NA1.1125
O1W—H2W10.83 (3)N1B—H1BA0.8600
C4—H4A0.9300C3B—C4B1.443 (8)
C1—H1A0.9300C3B—C2B1.456 (8)
C2A—C1A1.366 (6)C4B—C5B1.334 (7)
C2A—C3A1.381 (8)C4B—H4BA0.9300
C2A—H2AA0.9300C5B—H5BA0.9300
C1A—N1A1.347 (5)C2B—H2BA0.9300
C1A—H1AA0.9300
O3—S1—O2110.89 (7)H1NA—N2A—H1BB46.1
O3—S1—O1109.12 (7)C3A—N2A—H1BA102.2
O2—S1—O1109.99 (7)H1NA—N2A—H1BA138.1
O3—S1—O4109.09 (7)H1BB—N2A—H1BA175.5
O2—S1—O4109.35 (7)N2A—C3A—C2A122.9 (4)
O1—S1—O4108.35 (7)N2A—C3A—C4A121.2 (4)
C3—N2—H1N2119.4 (15)C2A—C3A—C4A115.9 (4)
C3—N2—H2N2118.3 (13)C2A—C3A—H1BA145.0
H1N2—N2—H2N2121.9 (19)C4A—C3A—H1BA99.1
N1—C5—C4121.14 (13)C5A—N1A—C1A120.9 (4)
N1—C5—H5A119.4C5A—N1A—H1AB113.9
C4—C5—H5A119.4C1A—N1A—H1AB125.2
C5—N1—C1120.88 (13)C5A—N1A—H2NB114.7
C5—N1—H1N1119.8 (15)C1A—N1A—H2NB124.4
C1—N1—H1N1118.7 (14)C3B—N2B—H1AB98.6
N2—C3—C4121.37 (13)C3B—N2B—H1NB123.7
N2—C3—C2121.41 (13)H1AB—N2B—H1NB136.0
C4—C3—C2117.21 (13)C3B—N2B—H2NB117.9
C1—C2—H2A120.0H1NB—N2B—H2NB116.1
C3—C2—H2A120.0N1B—C1B—C2B123.4 (5)
H1W1—O1W—H2W1114 (3)N1B—C1B—H1NA65.4
C5—C4—C3119.81 (13)C2B—C1B—H1NA171.1
C5—C4—H4A120.1N1B—C1B—H1BB108.0
C3—C4—H4A120.1C2B—C1B—H1BB128.3
N1—C1—C2120.94 (14)C1B—N1B—C5B119.7 (5)
N1—C1—H1A119.5C1B—N1B—H2NA126.9
C2—C1—H1A119.5C5B—N1B—H2NA113.3
C1A—C2A—C3A121.7 (7)C1B—N1B—H1BA120.0
C1A—C2A—H2AA119.1C5B—N1B—H1BA120.3
C3A—C2A—H2AA119.1N2B—C3B—C4B120.9 (5)
N1A—C1A—C2A119.7 (5)N2B—C3B—C2B122.3 (4)
N1A—C1A—H1AA120.1C4B—C3B—C2B116.8 (5)
C2A—C1A—H1AA120.1C4B—C3B—H1AB96.6
N1A—C5A—C4A121.2 (6)C2B—C3B—H1AB146.6
N1A—C5A—H5AA119.4C5B—C4B—C3B119.5 (6)
C4A—C5A—H5AA119.4C5B—C4B—H4BA120.2
C5A—C4A—C3A120.6 (5)C3B—C4B—H4BA120.2
C5A—C4A—H4AA119.7C4B—C5B—N1B122.4 (7)
C3A—C4A—H4AA119.7C4B—C5B—H5BA118.8
C3A—N2A—H2NA113.5N1B—C5B—H5BA118.8
C3A—N2A—H1NA119.5C1B—C2B—C3B118.2 (5)
H2NA—N2A—H1NA127.0C1B—C2B—H2BA120.9
C3A—N2A—H1BB73.5C3B—C2B—H2BA120.9
H2NA—N2A—H1BB172.0
C4—C5—N1—C10.7 (2)C5A—C4A—C3A—N2A179.3 (4)
N2—C3—C2—C1−177.42 (14)C5A—C4A—C3A—C2A−1.6 (7)
C4—C3—C2—C12.2 (2)C4A—C5A—N1A—C1A0.7 (7)
N1—C5—C4—C30.4 (2)C2A—C1A—N1A—C5A−0.5 (7)
N2—C3—C4—C5177.75 (13)C2B—C1B—N1B—C5B0.1 (8)
C2—C3—C4—C5−1.9 (2)N2B—C3B—C4B—C5B179.5 (5)
C5—N1—C1—C2−0.4 (2)C2B—C3B—C4B—C5B0.6 (8)
C3—C2—C1—N1−1.1 (2)C3B—C4B—C5B—N1B−0.3 (10)
C3A—C2A—C1A—N1A−0.9 (8)C1B—N1B—C5B—C4B0.0 (9)
N1A—C5A—C4A—C3A0.3 (8)N1B—C1B—C2B—C3B0.2 (8)
C1A—C2A—C3A—N2A−179.1 (4)N2B—C3B—C2B—C1B−179.4 (5)
C1A—C2A—C3A—C4A1.8 (8)C4B—C3B—C2B—C1B−0.5 (8)
D—H···AD—HH···AD···AD—H···A
N2A—H2NA···O1i0.852.032.822 (3)156.
N2A—H1NA···O1Wii0.792.072.812 (3)159.
N1A—H1AB···O1iii0.862.202.938 (4)144.
O1W—H1W1···O2iv0.91 (3)1.88 (3)2.7952 (19)176 (3)
O1W—H2W1···O1v0.83 (3)2.00 (3)2.8195 (18)167 (2)
N1—H1N1···O4iv0.88 (3)1.85 (2)2.7102 (17)165 (2)
N2—H1N2···O40.86 (3)2.01 (3)2.8665 (17)176 (2)
N2—H2N2···O3vi0.862 (19)1.96 (2)2.8118 (17)167.9 (16)
C1—H1A···O2vii0.932.463.3688 (18)167.
C1A—H1AA···O1Wviii0.932.583.318 (4)137.
C5A—H5AA···O2iii0.932.443.228 (7)143.
C4A—H4AA···O3i0.932.543.362 (6)147.
C5—H5A···O4i0.932.523.3360 (18)146.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2A—H2NA⋯O1i0.852.032.822 (3)156
N2A—H1NA⋯O1Wii0.792.072.812 (3)159
N1A—H1AB⋯O1iii0.862.202.938 (4)144
O1W—H1W1⋯O2iv0.91 (3)1.88 (3)2.7952 (19)176 (3)
O1W—H2W1⋯O1v0.83 (3)2.00 (3)2.8195 (18)167 (2)
N1—H1N1⋯O4iv0.88 (3)1.85 (2)2.7102 (17)165 (2)
N2—H1N2⋯O40.86 (3)2.01 (3)2.8665 (17)176 (2)
N2—H2N2⋯O3vi0.862 (19)1.96 (2)2.8118 (17)167.9 (16)
C1—H1A⋯O2vii0.932.463.3688 (18)167
C1A—H1AA⋯O1Wviii0.932.583.318 (4)137
C5A—H5AA⋯O2iii0.932.443.228 (7)143
C4A—H4AA⋯O3i0.932.543.362 (6)147
C5—H5A⋯O4i0.932.523.3360 (18)146

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .

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Journal:  Neurology       Date:  1997-04       Impact factor: 9.910

3.  Dinuclear calcium complex with weakly NH...O hydrogen-bonded sulfonate ligands.

Authors:  A Onoda; Y Yamada; M Doi; T Okamura; N Ueyama
Journal:  Inorg Chem       Date:  2001-01-29       Impact factor: 5.165

4.  4-Amino-pyridinium 4-nitro-benzoate 4-nitro-benzoic acid.

Authors:  Ching Kheng Quah; Samuel Robinson Jebas; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-06

5.  2-Amino-pyridinium 4-hydroxy-benzoate.

Authors:  Ching Kheng Quah; Samuel Robinson Jebas; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-31

6.  Treatment of episodic ataxia type 2 with the potassium channel blocker 4-aminopyridine.

Authors:  M Strupp; R Kalla; M Dichgans; T Freilinger; S Glasauer; T Brandt
Journal:  Neurology       Date:  2004-05-11       Impact factor: 9.910

7.  Sulfate-binding protein dislikes protonated oxyacids. A molecular explanation.

Authors:  B L Jacobson; F A Quiocho
Journal:  J Mol Biol       Date:  1988-12-05       Impact factor: 5.469

Review 8.  Potassium channel blockers in multiple sclerosis: neuronal Kv channels and effects of symptomatic treatment.

Authors:  Susan I V Judge; Christopher T Bever
Journal:  Pharmacol Ther       Date:  2006-02-09       Impact factor: 12.310

9.  2-Amino-4-methylpyridinium 2-hy-droxy-3,5-dinitro-benzoate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Bis(4-amino-pyridinium) hexa-aqua-nickel(II) bis-(sulfate).

Authors:  Thameur Sahbani; Wajda Smirani Sta; Mohamed Rzaigui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-07
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