| Literature DB >> 21588615 |
Ching Kheng Quah, Hoong-Kun Fun, Arun M Isloor, Nishitha Isloor.
Abstract
The asymmetric unit of the title compound, 2C(5)H(7)N(2) (+)·SO(4) (2-)·H(2)O, contains two 4-amino-pyridinium cations (A and B), a sulfate dianion and a water mol-ecule. One of the 4-amino-pyridinium cations (B) is disordered over two orientations with refined site occupancies of 0.568 (4) and 0.432 (4). The non-H atoms of the 4-amino-pyridinium cations are essentially coplanar, with a maximum deviation of 0.055 (1) Å (in cation A), 0.022 (3) Å (for the major component in cation B) and 0.009 (3) Å (for the minor component in cation B). In the crystal, the sulfate O atoms link the 4-amino-pyridinium cations and water mol-ecules into a three-dimensional network via inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds. The crystal structure is further consolidated by N-H⋯O(water) and C-H⋯O(water) hydrogen bonds.Entities:
Year: 2010 PMID: 21588615 PMCID: PMC3007857 DOI: 10.1107/S1600536810030941
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C5H7N2+·SO42−·H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3597 reflections | |
| θ = 3.1–30.1° | |
| µ = 0.27 mm−1 | |
| α = 96.365 (1)° | |
| β = 97.534 (1)° | Plate, colourless |
| γ = 95.387 (1)° | 0.33 × 0.25 × 0.07 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 3839 independent reflections |
| Radiation source: fine-focus sealed tube | 3279 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.0°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 10717 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3839 reflections | (Δ/σ)max < 0.001 |
| 259 parameters | Δρmax = 0.59 e Å−3 |
| 0 restraints | Δρmin = −0.55 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| S1 | 0.41695 (5) | 0.12500 (4) | 0.29301 (3) | 0.01520 (10) | |
| O4 | 0.28974 (17) | 0.13054 (13) | 0.38487 (9) | 0.0210 (2) | |
| O3 | 0.52927 (17) | 0.28476 (13) | 0.29263 (10) | 0.0217 (2) | |
| O2 | 0.56565 (18) | 0.00390 (14) | 0.30613 (10) | 0.0256 (3) | |
| O1 | 0.27120 (18) | 0.08095 (15) | 0.18901 (10) | 0.0277 (3) | |
| N2 | −0.0310 (2) | 0.34101 (15) | 0.35023 (11) | 0.0172 (2) | |
| C5 | 0.2971 (2) | 0.72142 (18) | 0.42897 (12) | 0.0182 (3) | |
| H5A | 0.4373 | 0.7607 | 0.4527 | 0.022* | |
| N1 | 0.1519 (2) | 0.82613 (16) | 0.41396 (11) | 0.0192 (3) | |
| C3 | 0.0277 (2) | 0.49838 (17) | 0.37303 (11) | 0.0144 (3) | |
| C2 | −0.1204 (2) | 0.61239 (18) | 0.36079 (12) | 0.0168 (3) | |
| H2A | −0.2625 | 0.5775 | 0.3392 | 0.020* | |
| O1W | 0.8386 (2) | 0.96841 (16) | 0.15025 (14) | 0.0355 (3) | |
| C4 | 0.2413 (2) | 0.55943 (17) | 0.40997 (11) | 0.0160 (3) | |
| H4A | 0.3428 | 0.4891 | 0.4212 | 0.019* | |
| C1 | −0.0540 (2) | 0.77280 (18) | 0.38069 (12) | 0.0189 (3) | |
| H1A | −0.1514 | 0.8467 | 0.3713 | 0.023* | |
| C2A | 0.7722 (12) | 0.4735 (7) | 1.0588 (7) | 0.0238 (7) | 0.568 (4) |
| H2AA | 0.8019 | 0.5311 | 1.1282 | 0.029* | 0.568 (4) |
| C1A | 0.7613 (4) | 0.3094 (4) | 1.0482 (3) | 0.0238 (7) | 0.568 (4) |
| H1AA | 0.7854 | 0.2567 | 1.1097 | 0.029* | 0.568 (4) |
| C5A | 0.6790 (11) | 0.2982 (7) | 0.8591 (6) | 0.0237 (11) | 0.568 (4) |
| H5AA | 0.6461 | 0.2370 | 0.7910 | 0.028* | 0.568 (4) |
| C4A | 0.6891 (9) | 0.4594 (7) | 0.8661 (5) | 0.0175 (10) | 0.568 (4) |
| H4AA | 0.6624 | 0.5082 | 0.8030 | 0.021* | 0.568 (4) |
| N2A | 0.7527 (4) | 0.7162 (3) | 0.9771 (2) | 0.0185 (6) | 0.568 (4) |
| H2NA | 0.7286 | 0.7515 | 0.9160 | 0.028* | 0.568 (4) |
| H1NA | 0.7770 | 0.7672 | 1.0350 | 0.028* | 0.568 (4) |
| C3A | 0.7401 (4) | 0.5559 (4) | 0.9691 (2) | 0.0134 (6) | 0.568 (4) |
| N1A | 0.7155 (4) | 0.2243 (4) | 0.9482 (3) | 0.0263 (7) | 0.568 (4) |
| H1AB | 0.7039 | 0.1217 | 0.9350 | 0.032* | 0.568 (4) |
| N2B | 0.7174 (5) | 0.1525 (5) | 0.9860 (3) | 0.0219 (8) | 0.432 (4) |
| H1NB | 0.7542 | 0.1178 | 1.0500 | 0.033* | 0.432 (4) |
| H2NB | 0.7106 | 0.0855 | 0.9312 | 0.033* | 0.432 (4) |
| C1B | 0.7723 (6) | 0.5882 (5) | 1.0409 (4) | 0.0270 (10) | 0.432 (4) |
| H1BB | 0.7821 | 0.6760 | 1.0868 | 0.040* | 0.432 (4) |
| N1B | 0.7377 (5) | 0.6283 (6) | 0.9395 (4) | 0.0257 (9) | 0.432 (4) |
| H1BA | 0.7421 | 0.7279 | 0.9294 | 0.038* | 0.432 (4) |
| C3B | 0.7256 (5) | 0.3062 (6) | 0.9719 (3) | 0.0173 (8) | 0.432 (4) |
| C4B | 0.6880 (12) | 0.3543 (9) | 0.8640 (6) | 0.0168 (13) | 0.432 (4) |
| H4BA | 0.6584 | 0.2771 | 0.8030 | 0.020* | 0.432 (4) |
| C5B | 0.6959 (13) | 0.5103 (9) | 0.8524 (7) | 0.0208 (13) | 0.432 (4) |
| H5BA | 0.6721 | 0.5400 | 0.7824 | 0.025* | 0.432 (4) |
| C2B | 0.7688 (12) | 0.4344 (6) | 1.0631 (6) | 0.0153 (12) | 0.432 (4) |
| H2BA | 0.7932 | 0.4112 | 1.1347 | 0.018* | 0.432 (4) |
| H1W1 | 0.750 (5) | 0.985 (4) | 0.201 (3) | 0.067 (9)* | |
| H2W1 | 0.963 (5) | 1.006 (3) | 0.172 (2) | 0.054 (8)* | |
| H1N1 | 0.193 (3) | 0.929 (3) | 0.4163 (18) | 0.033 (6)* | |
| H1N2 | 0.061 (4) | 0.275 (3) | 0.3623 (17) | 0.031 (6)* | |
| H2N2 | −0.163 (3) | 0.309 (2) | 0.3310 (16) | 0.023 (5)* |
| S1 | 0.01105 (16) | 0.01034 (16) | 0.02362 (18) | 0.00082 (11) | 0.00082 (12) | 0.00180 (12) |
| O4 | 0.0194 (5) | 0.0152 (5) | 0.0305 (6) | 0.0027 (4) | 0.0077 (4) | 0.0058 (4) |
| O3 | 0.0194 (5) | 0.0141 (5) | 0.0311 (6) | −0.0032 (4) | 0.0040 (4) | 0.0044 (4) |
| O2 | 0.0208 (6) | 0.0197 (5) | 0.0401 (7) | 0.0100 (4) | 0.0077 (5) | 0.0098 (5) |
| O1 | 0.0191 (5) | 0.0286 (6) | 0.0303 (6) | 0.0024 (5) | −0.0056 (5) | −0.0071 (5) |
| N2 | 0.0142 (6) | 0.0140 (6) | 0.0232 (6) | 0.0016 (5) | 0.0031 (5) | 0.0004 (5) |
| C5 | 0.0158 (6) | 0.0202 (7) | 0.0181 (6) | −0.0016 (5) | 0.0036 (5) | 0.0021 (5) |
| N1 | 0.0226 (6) | 0.0137 (6) | 0.0217 (6) | −0.0008 (5) | 0.0062 (5) | 0.0027 (5) |
| C3 | 0.0158 (6) | 0.0156 (6) | 0.0123 (6) | 0.0011 (5) | 0.0036 (5) | 0.0026 (5) |
| C2 | 0.0152 (6) | 0.0182 (7) | 0.0176 (6) | 0.0024 (5) | 0.0028 (5) | 0.0032 (5) |
| O1W | 0.0192 (6) | 0.0249 (6) | 0.0622 (10) | 0.0008 (5) | 0.0094 (6) | 0.0017 (6) |
| C4 | 0.0145 (6) | 0.0175 (7) | 0.0163 (6) | 0.0025 (5) | 0.0024 (5) | 0.0029 (5) |
| C1 | 0.0206 (7) | 0.0169 (7) | 0.0210 (7) | 0.0049 (5) | 0.0052 (5) | 0.0048 (5) |
| C2A | 0.0165 (11) | 0.0299 (17) | 0.0289 (14) | 0.0066 (10) | 0.0065 (9) | 0.0130 (11) |
| C1A | 0.0165 (11) | 0.0299 (17) | 0.0289 (14) | 0.0066 (10) | 0.0065 (9) | 0.0130 (11) |
| C5A | 0.0209 (17) | 0.016 (3) | 0.0340 (19) | 0.003 (2) | 0.0088 (13) | −0.005 (2) |
| C4A | 0.0193 (15) | 0.015 (3) | 0.0171 (19) | 0.001 (2) | 0.0023 (12) | −0.0004 (19) |
| N2A | 0.0209 (11) | 0.0122 (13) | 0.0214 (11) | 0.0026 (8) | 0.0036 (8) | −0.0034 (9) |
| C3A | 0.0089 (11) | 0.0152 (14) | 0.0161 (15) | 0.0024 (9) | 0.0029 (9) | 0.0000 (11) |
| N1A | 0.0228 (13) | 0.0104 (15) | 0.0475 (19) | 0.0020 (11) | 0.0117 (12) | 0.0029 (15) |
| N2B | 0.0266 (17) | 0.0202 (18) | 0.0188 (15) | 0.0024 (13) | 0.0015 (12) | 0.0037 (13) |
| C1B | 0.0173 (18) | 0.025 (2) | 0.036 (3) | −0.0006 (14) | 0.0071 (16) | −0.0072 (18) |
| N1B | 0.0165 (16) | 0.015 (2) | 0.047 (2) | 0.0037 (13) | 0.0092 (14) | 0.004 (2) |
| C3B | 0.0114 (15) | 0.020 (2) | 0.020 (2) | 0.0028 (14) | 0.0025 (12) | 0.0010 (16) |
| C4B | 0.019 (2) | 0.018 (4) | 0.016 (2) | 0.005 (3) | 0.0026 (15) | 0.007 (3) |
| C5B | 0.018 (2) | 0.017 (4) | 0.030 (3) | 0.007 (3) | 0.0061 (17) | 0.008 (2) |
| C2B | 0.0112 (16) | 0.029 (3) | 0.0062 (16) | 0.004 (2) | 0.0031 (12) | 0.002 (2) |
| S1—O3 | 1.4666 (11) | C5A—N1A | 1.335 (9) |
| S1—O2 | 1.4706 (11) | C5A—C4A | 1.345 (5) |
| S1—O1 | 1.4849 (12) | C5A—H5AA | 0.9300 |
| S1—O4 | 1.4909 (12) | C4A—C3A | 1.422 (6) |
| N2—C3 | 1.3311 (18) | C4A—H4AA | 0.9300 |
| N2—H1N2 | 0.86 (2) | N2A—C3A | 1.335 (4) |
| N2—H2N2 | 0.86 (2) | N2A—H2NA | 0.8477 |
| C5—N1 | 1.354 (2) | N2A—H1NA | 0.7856 |
| C5—C4 | 1.363 (2) | N1A—H1AB | 0.8555 |
| C5—H5A | 0.9300 | N2B—C3B | 1.321 (6) |
| N1—C1 | 1.355 (2) | N2B—H1NB | 0.8900 |
| N1—H1N1 | 0.88 (2) | N2B—H2NB | 0.8295 |
| C3—C4 | 1.4208 (19) | C1B—N1B | 1.339 (6) |
| C3—C2 | 1.421 (2) | C1B—C2B | 1.352 (6) |
| C2—C1 | 1.362 (2) | C1B—H1BB | 0.8750 |
| C2—H2A | 0.9300 | N1B—C5B | 1.367 (11) |
| O1W—H1W1 | 0.91 (3) | N1B—H2NA | 1.1125 |
| O1W—H2W1 | 0.83 (3) | N1B—H1BA | 0.8600 |
| C4—H4A | 0.9300 | C3B—C4B | 1.443 (8) |
| C1—H1A | 0.9300 | C3B—C2B | 1.456 (8) |
| C2A—C1A | 1.366 (6) | C4B—C5B | 1.334 (7) |
| C2A—C3A | 1.381 (8) | C4B—H4BA | 0.9300 |
| C2A—H2AA | 0.9300 | C5B—H5BA | 0.9300 |
| C1A—N1A | 1.347 (5) | C2B—H2BA | 0.9300 |
| C1A—H1AA | 0.9300 | ||
| O3—S1—O2 | 110.89 (7) | H1NA—N2A—H1BB | 46.1 |
| O3—S1—O1 | 109.12 (7) | C3A—N2A—H1BA | 102.2 |
| O2—S1—O1 | 109.99 (7) | H1NA—N2A—H1BA | 138.1 |
| O3—S1—O4 | 109.09 (7) | H1BB—N2A—H1BA | 175.5 |
| O2—S1—O4 | 109.35 (7) | N2A—C3A—C2A | 122.9 (4) |
| O1—S1—O4 | 108.35 (7) | N2A—C3A—C4A | 121.2 (4) |
| C3—N2—H1N2 | 119.4 (15) | C2A—C3A—C4A | 115.9 (4) |
| C3—N2—H2N2 | 118.3 (13) | C2A—C3A—H1BA | 145.0 |
| H1N2—N2—H2N2 | 121.9 (19) | C4A—C3A—H1BA | 99.1 |
| N1—C5—C4 | 121.14 (13) | C5A—N1A—C1A | 120.9 (4) |
| N1—C5—H5A | 119.4 | C5A—N1A—H1AB | 113.9 |
| C4—C5—H5A | 119.4 | C1A—N1A—H1AB | 125.2 |
| C5—N1—C1 | 120.88 (13) | C5A—N1A—H2NB | 114.7 |
| C5—N1—H1N1 | 119.8 (15) | C1A—N1A—H2NB | 124.4 |
| C1—N1—H1N1 | 118.7 (14) | C3B—N2B—H1AB | 98.6 |
| N2—C3—C4 | 121.37 (13) | C3B—N2B—H1NB | 123.7 |
| N2—C3—C2 | 121.41 (13) | H1AB—N2B—H1NB | 136.0 |
| C4—C3—C2 | 117.21 (13) | C3B—N2B—H2NB | 117.9 |
| C1—C2—H2A | 120.0 | H1NB—N2B—H2NB | 116.1 |
| C3—C2—H2A | 120.0 | N1B—C1B—C2B | 123.4 (5) |
| H1W1—O1W—H2W1 | 114 (3) | N1B—C1B—H1NA | 65.4 |
| C5—C4—C3 | 119.81 (13) | C2B—C1B—H1NA | 171.1 |
| C5—C4—H4A | 120.1 | N1B—C1B—H1BB | 108.0 |
| C3—C4—H4A | 120.1 | C2B—C1B—H1BB | 128.3 |
| N1—C1—C2 | 120.94 (14) | C1B—N1B—C5B | 119.7 (5) |
| N1—C1—H1A | 119.5 | C1B—N1B—H2NA | 126.9 |
| C2—C1—H1A | 119.5 | C5B—N1B—H2NA | 113.3 |
| C1A—C2A—C3A | 121.7 (7) | C1B—N1B—H1BA | 120.0 |
| C1A—C2A—H2AA | 119.1 | C5B—N1B—H1BA | 120.3 |
| C3A—C2A—H2AA | 119.1 | N2B—C3B—C4B | 120.9 (5) |
| N1A—C1A—C2A | 119.7 (5) | N2B—C3B—C2B | 122.3 (4) |
| N1A—C1A—H1AA | 120.1 | C4B—C3B—C2B | 116.8 (5) |
| C2A—C1A—H1AA | 120.1 | C4B—C3B—H1AB | 96.6 |
| N1A—C5A—C4A | 121.2 (6) | C2B—C3B—H1AB | 146.6 |
| N1A—C5A—H5AA | 119.4 | C5B—C4B—C3B | 119.5 (6) |
| C4A—C5A—H5AA | 119.4 | C5B—C4B—H4BA | 120.2 |
| C5A—C4A—C3A | 120.6 (5) | C3B—C4B—H4BA | 120.2 |
| C5A—C4A—H4AA | 119.7 | C4B—C5B—N1B | 122.4 (7) |
| C3A—C4A—H4AA | 119.7 | C4B—C5B—H5BA | 118.8 |
| C3A—N2A—H2NA | 113.5 | N1B—C5B—H5BA | 118.8 |
| C3A—N2A—H1NA | 119.5 | C1B—C2B—C3B | 118.2 (5) |
| H2NA—N2A—H1NA | 127.0 | C1B—C2B—H2BA | 120.9 |
| C3A—N2A—H1BB | 73.5 | C3B—C2B—H2BA | 120.9 |
| H2NA—N2A—H1BB | 172.0 | ||
| C4—C5—N1—C1 | 0.7 (2) | C5A—C4A—C3A—N2A | 179.3 (4) |
| N2—C3—C2—C1 | −177.42 (14) | C5A—C4A—C3A—C2A | −1.6 (7) |
| C4—C3—C2—C1 | 2.2 (2) | C4A—C5A—N1A—C1A | 0.7 (7) |
| N1—C5—C4—C3 | 0.4 (2) | C2A—C1A—N1A—C5A | −0.5 (7) |
| N2—C3—C4—C5 | 177.75 (13) | C2B—C1B—N1B—C5B | 0.1 (8) |
| C2—C3—C4—C5 | −1.9 (2) | N2B—C3B—C4B—C5B | 179.5 (5) |
| C5—N1—C1—C2 | −0.4 (2) | C2B—C3B—C4B—C5B | 0.6 (8) |
| C3—C2—C1—N1 | −1.1 (2) | C3B—C4B—C5B—N1B | −0.3 (10) |
| C3A—C2A—C1A—N1A | −0.9 (8) | C1B—N1B—C5B—C4B | 0.0 (9) |
| N1A—C5A—C4A—C3A | 0.3 (8) | N1B—C1B—C2B—C3B | 0.2 (8) |
| C1A—C2A—C3A—N2A | −179.1 (4) | N2B—C3B—C2B—C1B | −179.4 (5) |
| C1A—C2A—C3A—C4A | 1.8 (8) | C4B—C3B—C2B—C1B | −0.5 (8) |
| H··· | ||||
| N2A—H2NA···O1i | 0.85 | 2.03 | 2.822 (3) | 156. |
| N2A—H1NA···O1Wii | 0.79 | 2.07 | 2.812 (3) | 159. |
| N1A—H1AB···O1iii | 0.86 | 2.20 | 2.938 (4) | 144. |
| O1W—H1W1···O2iv | 0.91 (3) | 1.88 (3) | 2.7952 (19) | 176 (3) |
| O1W—H2W1···O1v | 0.83 (3) | 2.00 (3) | 2.8195 (18) | 167 (2) |
| N1—H1N1···O4iv | 0.88 (3) | 1.85 (2) | 2.7102 (17) | 165 (2) |
| N2—H1N2···O4 | 0.86 (3) | 2.01 (3) | 2.8665 (17) | 176 (2) |
| N2—H2N2···O3vi | 0.862 (19) | 1.96 (2) | 2.8118 (17) | 167.9 (16) |
| C1—H1A···O2vii | 0.93 | 2.46 | 3.3688 (18) | 167. |
| C1A—H1AA···O1Wviii | 0.93 | 2.58 | 3.318 (4) | 137. |
| C5A—H5AA···O2iii | 0.93 | 2.44 | 3.228 (7) | 143. |
| C4A—H4AA···O3i | 0.93 | 2.54 | 3.362 (6) | 147. |
| C5—H5A···O4i | 0.93 | 2.52 | 3.3360 (18) | 146. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2 | 0.85 | 2.03 | 2.822 (3) | 156 |
| N2 | 0.79 | 2.07 | 2.812 (3) | 159 |
| N1 | 0.86 | 2.20 | 2.938 (4) | 144 |
| O1 | 0.91 (3) | 1.88 (3) | 2.7952 (19) | 176 (3) |
| O1 | 0.83 (3) | 2.00 (3) | 2.8195 (18) | 167 (2) |
| N1—H1 | 0.88 (3) | 1.85 (2) | 2.7102 (17) | 165 (2) |
| N2—H1 | 0.86 (3) | 2.01 (3) | 2.8665 (17) | 176 (2) |
| N2—H2 | 0.862 (19) | 1.96 (2) | 2.8118 (17) | 167.9 (16) |
| C1—H1 | 0.93 | 2.46 | 3.3688 (18) | 167 |
| C1 | 0.93 | 2.58 | 3.318 (4) | 137 |
| C5 | 0.93 | 2.44 | 3.228 (7) | 143 |
| C4 | 0.93 | 2.54 | 3.362 (6) | 147 |
| C5—H5 | 0.93 | 2.52 | 3.3360 (18) | 146 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .