Literature DB >> 21588618

2-Amino-5-methyl-pyridinium 2-hy-droxy-benzoate.

Ching Kheng Quah1, Madhukar Hemamalini, Hoong-Kun Fun.   

Abstract

In the title compound, C(6)H(9)N(2) (+)·C(7)H(5)O(3) (-), the protonated 2-amino-5-methyl-pyridinium cation and the 2-hy-droxy-benzoate anion are both essentially planar, with maximum deviations of 0.026 (2) and 0.034 (1) Å, respectively. The anion is stabilized by an intra-molecular O-H⋯O hydrogen bond, which forms an S(6) ring motif. In the solid state, the anions are linked to the cations via pairs of inter-molecular N-H⋯O hydrogen bonds forming R(2) (2)(8) ring motifs. The crystal structure is further stabilized by N-H⋯O and C-H⋯O inter-actions which link the mol-ecules into chains along [010]. A π-π stacking inter-action [centroid-centroid-distance = 3.740 (2) Å] is also observed.

Entities:  

Year:  2010        PMID: 21588618      PMCID: PMC3008107          DOI: 10.1107/S1600536810030928

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and the applications of carb­oxy­lic acids, see: Miller & Orgel (1974 ▶); Kvenvolden et al. (1971 ▶); Desiraju (1989 ▶); MacDonald & Whitesides (1994 ▶). For applications of salicylic acid, see: Singh & Vijayan (1974 ▶); Patel et al. (1988 ▶). For related structures, see: Quah et al. (2008 ▶; 2010a ▶,b ▶). For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C6H9N2 +·C7H5O3 M = 246.26 Monoclinic, a = 13.211 (7) Å b = 7.170 (4) Å c = 14.324 (7) Å β = 104.668 (11)° V = 1312.6 (12) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 297 K 0.42 × 0.19 × 0.10 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.963, T max = 0.991 14312 measured reflections 3797 independent reflections 2233 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.134 S = 1.01 3797 reflections 219 parameters All H-atom parameters refined Δρmax = 0.14 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810030928/bt5314sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030928/bt5314Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C7H5O3F(000) = 520
Mr = 246.26Dx = 1.246 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3026 reflections
a = 13.211 (7) Åθ = 3.2–26.8°
b = 7.170 (4) ŵ = 0.09 mm1
c = 14.324 (7) ÅT = 297 K
β = 104.668 (11)°Block, yellow
V = 1312.6 (12) Å30.42 × 0.19 × 0.10 mm
Z = 4
Bruker SMART APEXII DUO CCD area-detector diffractometer3797 independent reflections
Radiation source: fine-focus sealed tube2233 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 30.0°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −18→18
Tmin = 0.963, Tmax = 0.991k = −10→10
14312 measured reflectionsl = −20→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134All H-atom parameters refined
S = 1.01w = 1/[σ2(Fo2) + (0.0607P)2 + 0.0959P] where P = (Fo2 + 2Fc2)/3
3797 reflections(Δ/σ)max < 0.001
219 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.25056 (7)0.79968 (17)0.30963 (8)0.0491 (3)
N20.07534 (9)0.7373 (2)0.28908 (10)0.0664 (4)
C10.15649 (8)0.84904 (19)0.32288 (9)0.0485 (3)
C20.15072 (10)1.0168 (2)0.37198 (9)0.0542 (3)
C30.23752 (10)1.1242 (2)0.40264 (10)0.0561 (3)
C40.33511 (10)1.0709 (2)0.38749 (9)0.0544 (3)
C50.33759 (9)0.9075 (2)0.34103 (9)0.0523 (3)
C60.43050 (14)1.1912 (3)0.41915 (16)0.0791 (5)
O10.40974 (7)0.27586 (19)0.17167 (9)0.0806 (4)
O20.10956 (7)0.41138 (14)0.18462 (8)0.0703 (3)
O30.27788 (7)0.48394 (15)0.21915 (9)0.0710 (3)
C70.32912 (10)0.1574 (2)0.13606 (10)0.0581 (4)
C80.35051 (15)−0.0109 (3)0.09641 (12)0.0760 (5)
C90.27204 (17)−0.1348 (3)0.05976 (13)0.0830 (5)
C100.17009 (17)−0.0959 (3)0.06012 (13)0.0799 (5)
C110.14807 (12)0.0712 (2)0.09921 (11)0.0635 (4)
C120.22624 (9)0.19952 (19)0.13827 (9)0.0494 (3)
C130.20156 (9)0.37630 (19)0.18311 (10)0.0529 (3)
H2A0.0850 (11)1.050 (2)0.3827 (10)0.067 (4)*
H3A0.2348 (12)1.246 (3)0.4373 (11)0.074 (5)*
H5A0.3970 (10)0.854 (2)0.3237 (9)0.053 (3)*
H6A0.4887 (16)1.146 (3)0.3935 (14)0.107 (7)*
H6B0.4150 (17)1.318 (4)0.3879 (17)0.131 (9)*
H6C0.4491 (16)1.208 (3)0.4862 (19)0.123 (8)*
H8A0.4216 (15)−0.033 (3)0.1009 (13)0.097 (6)*
H9A0.2895 (14)−0.256 (3)0.0343 (13)0.098 (6)*
H10A0.1156 (15)−0.181 (3)0.0375 (14)0.102 (6)*
H11A0.0773 (12)0.101 (2)0.1003 (10)0.068 (4)*
H1N10.2564 (11)0.678 (3)0.2733 (11)0.073 (4)*
H1N20.0141 (13)0.771 (2)0.2980 (12)0.078 (5)*
H2N20.0862 (13)0.626 (3)0.2540 (13)0.087 (5)*
H1O10.3730 (16)0.382 (3)0.1984 (15)0.116 (7)*
U11U22U33U12U13U23
N10.0397 (5)0.0494 (7)0.0589 (6)0.0009 (5)0.0137 (4)−0.0009 (5)
N20.0401 (5)0.0620 (9)0.0988 (9)−0.0039 (5)0.0209 (6)−0.0157 (7)
C10.0396 (5)0.0504 (8)0.0560 (7)0.0017 (5)0.0131 (5)0.0018 (6)
C20.0480 (6)0.0565 (9)0.0592 (7)0.0039 (6)0.0158 (6)−0.0028 (6)
C30.0614 (7)0.0537 (9)0.0520 (7)−0.0011 (7)0.0121 (6)−0.0041 (7)
C40.0524 (7)0.0579 (9)0.0508 (7)−0.0090 (6)0.0092 (5)0.0044 (6)
C50.0401 (6)0.0607 (9)0.0574 (7)−0.0017 (6)0.0143 (5)0.0045 (7)
C60.0653 (9)0.0833 (14)0.0848 (12)−0.0264 (10)0.0118 (9)−0.0071 (11)
O10.0495 (5)0.0882 (9)0.1105 (9)0.0064 (5)0.0323 (5)−0.0146 (7)
O20.0473 (5)0.0544 (7)0.1169 (8)0.0028 (4)0.0349 (5)−0.0095 (6)
O30.0502 (5)0.0530 (6)0.1159 (8)−0.0031 (5)0.0324 (5)−0.0166 (6)
C70.0549 (7)0.0635 (10)0.0597 (7)0.0154 (7)0.0216 (6)0.0049 (7)
C80.0784 (10)0.0775 (13)0.0775 (10)0.0292 (10)0.0297 (8)−0.0028 (9)
C90.1128 (15)0.0655 (12)0.0739 (10)0.0248 (11)0.0296 (10)−0.0121 (9)
C100.0967 (13)0.0645 (12)0.0772 (11)−0.0022 (10)0.0198 (9)−0.0197 (9)
C110.0634 (8)0.0604 (10)0.0672 (9)0.0032 (7)0.0177 (7)−0.0063 (7)
C120.0505 (6)0.0480 (8)0.0521 (6)0.0086 (6)0.0176 (5)0.0059 (6)
C130.0471 (6)0.0451 (8)0.0719 (8)0.0040 (6)0.0252 (6)0.0047 (7)
N1—C11.3510 (15)C6—H6C0.94 (3)
N1—C51.3638 (17)O1—C71.3567 (19)
N1—H1N11.030 (18)O1—H1O11.03 (2)
N2—C11.3279 (18)O2—C131.2467 (15)
N2—H1N20.884 (18)O3—C131.2710 (16)
N2—H2N20.97 (2)C7—C81.393 (2)
C1—C21.405 (2)C7—C121.4006 (18)
C2—C31.359 (2)C8—C91.365 (3)
C2—H2A0.950 (15)C8—H8A0.938 (19)
C3—C41.413 (2)C9—C101.377 (3)
C3—H3A1.011 (18)C9—H9A0.99 (2)
C4—C51.352 (2)C10—C111.384 (2)
C4—C61.500 (2)C10—H10A0.94 (2)
C5—H5A0.960 (13)C11—C121.391 (2)
C6—H6A0.99 (2)C11—H11A0.962 (15)
C6—H6B1.01 (3)C12—C131.494 (2)
C1—N1—C5122.26 (13)H6A—C6—H6C113.4 (17)
C1—N1—H1N1118.8 (8)H6B—C6—H6C108 (2)
C5—N1—H1N1118.9 (8)C7—O1—H1O1101.7 (11)
C1—N2—H1N2117.6 (11)O1—C7—C8118.34 (13)
C1—N2—H2N2118.2 (10)O1—C7—C12122.04 (13)
H1N2—N2—H2N2124.1 (15)C8—C7—C12119.62 (15)
N2—C1—N1118.50 (13)C9—C8—C7120.52 (16)
N2—C1—C2123.91 (12)C9—C8—H8A124.5 (13)
N1—C1—C2117.58 (11)C7—C8—H8A114.8 (13)
C3—C2—C1119.91 (12)C8—C9—C10121.02 (18)
C3—C2—H2A122.5 (9)C8—C9—H9A119.2 (11)
C1—C2—H2A117.6 (9)C10—C9—H9A119.8 (11)
C2—C3—C4121.70 (14)C9—C10—C11118.87 (18)
C2—C3—H3A121.2 (9)C9—C10—H10A122.2 (13)
C4—C3—H3A117.1 (9)C11—C10—H10A118.9 (13)
C5—C4—C3116.52 (12)C10—C11—C12121.65 (15)
C5—C4—C6121.61 (14)C10—C11—H11A120.0 (10)
C3—C4—C6121.86 (16)C12—C11—H11A118.3 (9)
C4—C5—N1122.02 (12)C11—C12—C7118.32 (13)
C4—C5—H5A126.5 (8)C11—C12—C13120.92 (12)
N1—C5—H5A111.4 (8)C7—C12—C13120.75 (12)
C4—C6—H6A111.8 (13)O2—C13—O3123.17 (13)
C4—C6—H6B108.9 (13)O2—C13—C12119.90 (12)
H6A—C6—H6B102.8 (18)O3—C13—C12116.93 (11)
C4—C6—H6C111.5 (14)
C5—N1—C1—N2179.21 (12)C8—C9—C10—C11−0.5 (3)
C5—N1—C1—C2−0.82 (18)C9—C10—C11—C12−0.3 (3)
N2—C1—C2—C3−178.87 (13)C10—C11—C12—C71.0 (2)
N1—C1—C2—C31.16 (19)C10—C11—C12—C13−177.95 (14)
C1—C2—C3—C4−0.7 (2)O1—C7—C12—C11179.29 (13)
C2—C3—C4—C5−0.1 (2)C8—C7—C12—C11−0.8 (2)
C2—C3—C4—C6178.54 (15)O1—C7—C12—C13−1.8 (2)
C3—C4—C5—N10.46 (19)C8—C7—C12—C13178.09 (13)
C6—C4—C5—N1−178.17 (14)C11—C12—C13—O2−1.0 (2)
C1—N1—C5—C40.00 (19)C7—C12—C13—O2−179.86 (12)
O1—C7—C8—C9179.92 (15)C11—C12—C13—O3178.39 (13)
C12—C7—C8—C90.0 (2)C7—C12—C13—O3−0.49 (19)
C7—C8—C9—C100.7 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O31.03 (2)1.65 (2)2.678 (2)174.6 (13)
N2—H1N2···O2i0.884 (18)1.987 (17)2.852 (2)165.4 (14)
N2—H2N2···O20.97 (2)1.90 (2)2.872 (2)179 (2)
O1—H1O1···O31.03 (2)1.55 (2)2.515 (2)155 (2)
C5—H5A···O1ii0.961 (14)2.598 (14)3.518 (3)160.2 (10)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O31.03 (2)1.65 (2)2.678 (2)174.6 (13)
N2—H1N2⋯O2i0.884 (18)1.987 (17)2.852 (2)165.4 (14)
N2—H2N2⋯O20.97 (2)1.90 (2)2.872 (2)179 (2)
O1—H1O1⋯O31.03 (2)1.55 (2)2.515 (2)155 (2)
C5—H5A⋯O1ii0.961 (14)2.598 (14)3.518 (3)160.2 (10)

Symmetry codes: (i) ; (ii) .

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