Literature DB >> 21588261

2-Amino-4-methyl-pyridinium 2-carb-oxy-benzoate.

Ching Kheng Quah1, Madhukar Hemamalini, Hoong-Kun Fun.   

Abstract

In the title mol-ecular salt, C(6)H(9)N(2) (+)·C(8)H(5)O(4) (-), the anion is stabilized by an intra-molecular O-H⋯O hydrogen bond, which generates an S(7) ring motif. In the crystal, the cations and anions are linked to form extended chains along [001] by O-H⋯O and N-H⋯O hydrogen bonds. Adjacent chains are crosslinked via C-H⋯O inter-actions into sheets lying parallel to (100).

Entities:  

Year:  2010        PMID: 21588261      PMCID: PMC3007269          DOI: 10.1107/S1600536810025900

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For substituted pyridines, see: Pozharski et al. (1997 ▶); Katritzky et al. (1996 ▶). For details of hydrogen bonding, see: Scheiner (1997 ▶); Jeffrey & Saenger (1991 ▶); Jeffrey (1997 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related structures, see: Quah et al. (2008a ▶,b ▶,c ▶). For reference bond lengths, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C6H9N2 +·C8H5O4 M = 274.27 Monoclinic, a = 13.0558 (15) Å b = 6.9182 (8) Å c = 14.2575 (17) Å β = 90.218 (2)° V = 1287.8 (3) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.41 × 0.19 × 0.11 mm

Data collection

Bruker SMART APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.958, T max = 0.989 26319 measured reflections 3856 independent reflections 3332 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.131 S = 1.13 3856 reflections 233 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810025900/hb5537sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025900/hb5537Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C8H5O4F(000) = 576
Mr = 274.27Dx = 1.415 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6320 reflections
a = 13.0558 (15) Åθ = 2.9–30.3°
b = 6.9182 (8) ŵ = 0.11 mm1
c = 14.2575 (17) ÅT = 100 K
β = 90.218 (2)°Block, colourless
V = 1287.8 (3) Å30.41 × 0.19 × 0.11 mm
Z = 4
Bruker SMART APEXII DUO CCD diffractometer3856 independent reflections
Radiation source: fine-focus sealed tube3332 reflections with I > 2σ(I)
graphiteRint = 0.046
φ and ω scansθmax = 30.3°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −18→18
Tmin = 0.958, Tmax = 0.989k = −9→9
26319 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H atoms treated by a mixture of independent and constrained refinement
S = 1.13w = 1/[σ2(Fo2) + (0.0537P)2 + 0.7248P] where P = (Fo2 + 2Fc2)/3
3856 reflections(Δ/σ)max = 0.001
233 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.33 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.92537 (9)0.10419 (17)0.64609 (8)0.0185 (2)
N20.85884 (10)0.0110 (2)0.78891 (8)0.0230 (3)
C10.84333 (10)0.05716 (19)0.69918 (9)0.0174 (3)
C20.74595 (10)0.05677 (19)0.65551 (9)0.0173 (2)
C30.73580 (10)0.10080 (19)0.56198 (9)0.0173 (2)
C40.82425 (10)0.1503 (2)0.50975 (9)0.0188 (3)
C50.91673 (10)0.1521 (2)0.55390 (9)0.0190 (3)
C60.63362 (11)0.0948 (2)0.51390 (11)0.0233 (3)
O10.29640 (8)0.07772 (17)1.07382 (7)0.0256 (2)
O20.14735 (7)0.13709 (16)1.00722 (7)0.0220 (2)
H1O20.12490.14840.95100.033*
O30.07013 (7)0.10883 (16)0.85474 (7)0.0232 (2)
O40.11341 (8)0.01778 (17)0.71187 (7)0.0255 (2)
C70.25074 (10)0.07219 (19)0.81743 (9)0.0169 (2)
C80.31459 (11)0.0630 (2)0.73921 (10)0.0252 (3)
C90.42058 (12)0.0674 (3)0.74708 (11)0.0343 (4)
C100.46574 (12)0.0806 (3)0.83501 (11)0.0307 (4)
C110.40349 (10)0.0909 (2)0.91336 (10)0.0212 (3)
C120.29652 (10)0.08811 (18)0.90749 (9)0.0158 (2)
C130.24430 (10)0.10053 (19)1.00235 (9)0.0178 (3)
C140.13713 (10)0.0649 (2)0.79293 (10)0.0186 (3)
H2A0.6866 (15)0.030 (3)0.6899 (13)0.025 (5)*
H4A0.8212 (13)0.180 (3)0.4489 (13)0.020 (4)*
H5A0.9801 (14)0.181 (3)0.5240 (13)0.026 (5)*
H6A0.6231 (16)0.198 (3)0.4689 (15)0.038 (6)*
H6B0.6280 (18)−0.026 (4)0.4780 (16)0.044 (6)*
H6C0.5785 (19)0.100 (3)0.5570 (18)0.050 (7)*
H8A0.2830 (17)0.056 (3)0.6805 (16)0.038 (6)*
H9A0.4616 (17)0.062 (3)0.6884 (16)0.039 (6)*
H10A0.5374 (18)0.080 (3)0.8406 (15)0.037 (6)*
H11A0.4322 (14)0.106 (2)0.9756 (13)0.018 (4)*
H1N10.9896 (18)0.087 (3)0.6745 (15)0.038 (6)*
H1N20.9214 (18)0.022 (3)0.8138 (15)0.037 (6)*
H2N20.8067 (17)−0.025 (3)0.8207 (14)0.028 (5)*
U11U22U33U12U13U23
N10.0148 (5)0.0233 (6)0.0174 (5)−0.0020 (4)−0.0001 (4)0.0000 (4)
N20.0200 (6)0.0340 (7)0.0150 (5)−0.0024 (5)−0.0008 (4)0.0032 (5)
C10.0176 (6)0.0188 (6)0.0159 (6)−0.0008 (4)0.0006 (4)−0.0010 (4)
C20.0148 (5)0.0198 (6)0.0172 (6)−0.0013 (4)0.0019 (4)−0.0013 (5)
C30.0169 (6)0.0176 (6)0.0175 (6)0.0003 (4)−0.0015 (4)−0.0015 (4)
C40.0204 (6)0.0204 (6)0.0156 (6)−0.0002 (5)0.0010 (5)0.0009 (5)
C50.0184 (6)0.0208 (6)0.0178 (6)−0.0020 (5)0.0031 (5)0.0009 (5)
C60.0176 (6)0.0309 (7)0.0212 (6)−0.0006 (5)−0.0036 (5)0.0001 (6)
O10.0203 (5)0.0412 (6)0.0153 (4)−0.0024 (4)−0.0015 (4)−0.0009 (4)
O20.0181 (5)0.0317 (5)0.0163 (4)0.0040 (4)0.0016 (3)−0.0018 (4)
O30.0147 (4)0.0350 (6)0.0199 (5)0.0033 (4)−0.0001 (4)0.0006 (4)
O40.0199 (5)0.0366 (6)0.0201 (5)0.0000 (4)−0.0039 (4)−0.0031 (4)
C70.0149 (5)0.0197 (6)0.0160 (5)0.0004 (4)−0.0009 (4)0.0009 (4)
C80.0204 (6)0.0397 (8)0.0156 (6)0.0001 (6)0.0003 (5)−0.0003 (6)
C90.0196 (7)0.0636 (12)0.0197 (7)−0.0003 (7)0.0047 (5)−0.0031 (7)
C100.0152 (6)0.0530 (10)0.0239 (7)0.0010 (6)0.0017 (5)−0.0021 (7)
C110.0164 (6)0.0292 (7)0.0181 (6)0.0014 (5)−0.0014 (5)−0.0003 (5)
C120.0155 (5)0.0170 (6)0.0150 (5)0.0004 (4)0.0003 (4)0.0006 (4)
C130.0172 (6)0.0199 (6)0.0163 (6)−0.0019 (5)0.0010 (4)−0.0013 (5)
C140.0169 (6)0.0202 (6)0.0188 (6)−0.0004 (5)−0.0012 (5)0.0026 (5)
N1—C11.3535 (17)O1—C131.2331 (16)
N1—C51.3599 (17)O2—C131.2929 (16)
N1—H1N10.94 (2)O2—H1O20.8555
N2—C11.3332 (17)O3—C141.2807 (17)
N2—H1N20.89 (2)O4—C141.2391 (17)
N2—H2N20.86 (2)C7—C81.3963 (19)
C1—C21.4136 (18)C7—C121.4186 (17)
C2—C31.3738 (18)C7—C141.5233 (18)
C2—H2A0.94 (2)C8—C91.388 (2)
C3—C41.4183 (19)C8—H8A0.93 (2)
C3—C61.4981 (18)C9—C101.386 (2)
C4—C51.3596 (19)C9—H9A1.00 (2)
C4—H4A0.892 (18)C10—C111.386 (2)
C5—H5A0.953 (19)C10—H10A0.94 (2)
C6—H6A0.97 (2)C11—C121.3988 (18)
C6—H6B0.98 (2)C11—H11A0.967 (18)
C6—H6C0.95 (3)C12—C131.5195 (18)
C1—N1—C5122.43 (12)H6B—C6—H6C108 (2)
C1—N1—H1N1115.9 (14)C13—O2—H1O2107.5
C5—N1—H1N1121.3 (14)C8—C7—C12118.39 (12)
C1—N2—H1N2119.7 (14)C8—C7—C14113.53 (12)
C1—N2—H2N2117.3 (13)C12—C7—C14128.08 (12)
H1N2—N2—H2N2122.9 (19)C9—C8—C7122.17 (13)
N2—C1—N1118.46 (12)C9—C8—H8A120.7 (14)
N2—C1—C2123.73 (13)C7—C8—H8A117.1 (14)
N1—C1—C2117.80 (12)C10—C9—C8119.66 (14)
C3—C2—C1120.69 (12)C10—C9—H9A122.3 (13)
C3—C2—H2A118.3 (12)C8—C9—H9A118.0 (13)
C1—C2—H2A121.0 (12)C11—C10—C9118.92 (14)
C2—C3—C4119.17 (12)C11—C10—H10A121.3 (13)
C2—C3—C6121.37 (12)C9—C10—H10A119.8 (13)
C4—C3—C6119.46 (12)C10—C11—C12122.65 (13)
C5—C4—C3118.86 (12)C10—C11—H11A121.2 (11)
C5—C4—H4A119.0 (11)C12—C11—H11A116.1 (11)
C3—C4—H4A122.2 (11)C11—C12—C7118.20 (12)
C4—C5—N1121.03 (12)C11—C12—C13113.40 (11)
C4—C5—H5A124.5 (11)C7—C12—C13128.40 (12)
N1—C5—H5A114.4 (11)O1—C13—O2121.18 (12)
C3—C6—H6A114.0 (12)O1—C13—C12118.71 (12)
C3—C6—H6B109.1 (14)O2—C13—C12120.10 (12)
H6A—C6—H6B105.8 (19)O4—C14—O3122.37 (12)
C3—C6—H6C112.3 (15)O4—C14—C7117.53 (12)
H6A—C6—H6C107.2 (19)O3—C14—C7120.09 (12)
C5—N1—C1—N2179.65 (13)C10—C11—C12—C70.6 (2)
C5—N1—C1—C20.7 (2)C10—C11—C12—C13179.86 (15)
N2—C1—C2—C3−178.20 (13)C8—C7—C12—C11−0.9 (2)
N1—C1—C2—C30.7 (2)C14—C7—C12—C11179.59 (13)
C1—C2—C3—C4−1.1 (2)C8—C7—C12—C13179.96 (13)
C1—C2—C3—C6178.00 (13)C14—C7—C12—C130.5 (2)
C2—C3—C4—C50.2 (2)C11—C12—C13—O1−12.47 (18)
C6—C3—C4—C5−178.95 (13)C7—C12—C13—O1166.68 (13)
C3—C4—C5—N11.2 (2)C11—C12—C13—O2166.57 (13)
C1—N1—C5—C4−1.6 (2)C7—C12—C13—O2−14.3 (2)
C12—C7—C8—C90.5 (2)C8—C7—C14—O412.57 (19)
C14—C7—C8—C9−179.94 (16)C12—C7—C14—O4−167.93 (14)
C7—C8—C9—C100.3 (3)C8—C7—C14—O3−166.62 (14)
C8—C9—C10—C11−0.6 (3)C12—C7—C14—O312.9 (2)
C9—C10—C11—C120.2 (3)
D—H···AD—HH···AD···AD—H···A
O2—H1O2···O30.861.572.4009 (14)163
N1—H1N1···O4i0.94 (2)1.77 (2)2.6919 (16)169 (2)
N2—H1N2···O3i0.89 (2)2.11 (2)2.9881 (16)166.6 (19)
N2—H2N2···O1ii0.86 (2)2.06 (2)2.8888 (16)164.5 (19)
C5—H5A···O2iii0.953 (19)2.532 (19)3.4133 (17)153.7 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H1O2⋯O30.861.572.4009 (14)163
N1—H1N1⋯O4i0.94 (2)1.77 (2)2.6919 (16)169 (2)
N2—H1N2⋯O3i0.89 (2)2.11 (2)2.9881 (16)166.6 (19)
N2—H2N2⋯O1ii0.86 (2)2.06 (2)2.8888 (16)164.5 (19)
C5—H5A⋯O2iii0.953 (19)2.532 (19)3.4133 (17)153.7 (16)

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-Amino-pyridinium 4-nitro-benzoate 4-nitro-benzoic acid.

Authors:  Ching Kheng Quah; Samuel Robinson Jebas; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-06

3.  2-Amino-pyridinium 4-hydroxy-benzoate.

Authors:  Ching Kheng Quah; Samuel Robinson Jebas; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-31

4.  3-Amino-benzoic acid-4-nitro-benzoic acid (1/1).

Authors:  Ching Kheng Quah; Samuel Robinson Jebas; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  5 in total

1.  2-Amino-5-bromo-pyridinium 2-carb-oxy-benzoate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

2.  2-Amino-5-bromo-pyridine-4-hy-droxy-benzoic acid (1/1).

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

3.  2-Amino-4-methylpyridinium 2-hy-droxy-3,5-dinitro-benzoate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

4.  2-Amino-5-bromo-pyridinium 2-hy-droxy-benzoate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

5.  2-Amino-5-methyl-pyridinium 2-hy-droxy-benzoate.

Authors:  Ching Kheng Quah; Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.