Literature DB >> 21187435

The noisy edge of traveling waves.

Oskar Hallatschek1.   

Abstract

Traveling waves are ubiquitous in nature and control the speed of many important dynamical processes, including chemical reactions, epidemic outbreaks, and biological evolution. Despite their fundamental role in complex systems, traveling waves remain elusive because they are often dominated by rare fluctuations in the wave tip, which have defied any rigorous analysis so far. Here, we show that by adjusting nonlinear model details, noisy traveling waves can be solved exactly. The moment equations of these tuned models are closed and have a simple analytical structure resembling the deterministic approximation supplemented by a nonlocal cutoff term. The peculiar form of the cutoff shapes the noisy edge of traveling waves and is critical for the correct prediction of the wave speed and its fluctuations. Our approach is illustrated and benchmarked using the example of fitness waves arising in simple models of microbial evolution, which are highly sensitive to number fluctuations. We demonstrate explicitly how these models can be tuned to account for finite population sizes and determine how quickly populations adapt as a function of population size and mutation rates. More generally, our method is shown to apply to a broad class of models, in which number fluctuations are generated by branching processes. Because of this versatility, the method of model tuning may serve as a promising route toward unraveling universal properties of complex discrete particle systems.

Mesh:

Year:  2010        PMID: 21187435      PMCID: PMC3033244          DOI: 10.1073/pnas.1013529108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

1.  Dynamics of competitive evolution on a smooth landscape.

Authors:  Weiqun Peng; Ulrich Gerland; Terence Hwa; Herbert Levine
Journal:  Phys Rev Lett       Date:  2003-02-26       Impact factor: 9.161

2.  Simulation and analysis of in vitro DNA evolution.

Authors:  Morten Kloster; Chao Tang
Journal:  Phys Rev Lett       Date:  2004-01-22       Impact factor: 9.161

3.  The solitary wave of asexual evolution.

Authors:  Igor M Rouzine; John Wakeley; John M Coffin
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-13       Impact factor: 11.205

4.  Phenomenological theory giving the full statistics of the position of fluctuating pulled fronts.

Authors:  E Brunet; B Derrida; A H Mueller; S Munier
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-05-26

5.  The scaling laws of human travel.

Authors:  D Brockmann; L Hufnagel; T Geisel
Journal:  Nature       Date:  2006-01-26       Impact factor: 49.962

6.  Effect of selection on ancestry: an exactly soluble case and its phenomenological generalization.

Authors:  E Brunet; B Derrida; A H Mueller; S Munier
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-10-03

7.  The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation.

Authors:  Igor M Rouzine; Eric Brunet; Claus O Wilke
Journal:  Theor Popul Biol       Date:  2007-10-22       Impact factor: 1.570

8.  The stochastic edge in adaptive evolution.

Authors:  Eric Brunet; Igor M Rouzine; Claus O Wilke
Journal:  Genetics       Date:  2008-05       Impact factor: 4.562

9.  Spiral waves of chemical activity.

Authors:  A T Winfree
Journal:  Science       Date:  1972-02-11       Impact factor: 47.728

10.  The fate of competing beneficial mutations in an asexual population.

Authors:  P J Gerrish; R E Lenski
Journal:  Genetica       Date:  1998       Impact factor: 1.082

View more
  56 in total

1.  Real time forecasting of near-future evolution.

Authors:  Philip J Gerrish; Paul D Sniegowski
Journal:  J R Soc Interface       Date:  2012-04-18       Impact factor: 4.118

2.  Serial founder effects during range expansion: a spatial analog of genetic drift.

Authors:  Montgomery Slatkin; Laurent Excoffier
Journal:  Genetics       Date:  2012-02-23       Impact factor: 4.562

3.  Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations.

Authors:  Benjamin H Good; Igor M Rouzine; Daniel J Balick; Oskar Hallatschek; Michael M Desai
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-27       Impact factor: 11.205

4.  Chance and risk in adaptive evolution.

Authors:  Michael Lässig
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-12       Impact factor: 11.205

5.  Fast stochastic algorithm for simulating evolutionary population dynamics.

Authors:  William H Mather; Jeff Hasty; Lev S Tsimring
Journal:  Bioinformatics       Date:  2012-03-21       Impact factor: 6.937

6.  Collective Fluctuations in the Dynamics of Adaptation and Other Traveling Waves.

Authors:  Oskar Hallatschek; Lukas Geyrhofer
Journal:  Genetics       Date:  2016-01-27       Impact factor: 4.562

7.  The dynamics of genetic draft in rapidly adapting populations.

Authors:  Katya Kosheleva; Michael M Desai
Journal:  Genetics       Date:  2013-09-03       Impact factor: 4.562

8.  Speed of invasion of an expanding population by a horizontally transmitted trait.

Authors:  Juan Venegas-Ortiz; Rosalind J Allen; Martin R Evans
Journal:  Genetics       Date:  2013-12-02       Impact factor: 4.562

Review 9.  Effective models and the search for quantitative principles in microbial evolution.

Authors:  Benjamin H Good; Oskar Hallatschek
Journal:  Curr Opin Microbiol       Date:  2018-12-06       Impact factor: 7.934

10.  Leading the dog of selection by its mutational nose.

Authors:  Daniel S Fisher
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-02       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.