Literature DB >> 18023832

The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation.

Igor M Rouzine1, Eric Brunet, Claus O Wilke.   

Abstract

We use traveling-wave theory to derive expressions for the rate of accumulation of deleterious mutations under Muller's ratchet and the speed of adaptation under positive selection in asexual populations. Traveling-wave theory is a semi-deterministic description of an evolving population, where the bulk of the population is modeled using deterministic equations, but the class of the highest-fitness genotypes, whose evolution over time determines loss or gain of fitness in the population, is given proper stochastic treatment. We derive improved methods to model the highest-fitness class (the stochastic edge) for both Muller's ratchet and adaptive evolution, and calculate analytic correction terms that compensate for inaccuracies which arise when treating discrete fitness classes as a continuum. We show that traveling-wave theory makes excellent predictions for the rate of mutation accumulation in the case of Muller's ratchet, and makes good predictions for the speed of adaptation in a very broad parameter range. We predict the adaptation rate to grow logarithmically in the population size until the population size is extremely large.

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Year:  2007        PMID: 18023832      PMCID: PMC2246079          DOI: 10.1016/j.tpb.2007.10.004

Source DB:  PubMed          Journal:  Theor Popul Biol        ISSN: 0040-5809            Impact factor:   1.570


  27 in total

Review 1.  Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology.

Authors:  I M Rouzine; A Rodrigo; J M Coffin
Journal:  Microbiol Mol Biol Rev       Date:  2001-03       Impact factor: 11.056

2.  The solitary wave of asexual evolution.

Authors:  Igor M Rouzine; John Wakeley; John M Coffin
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-13       Impact factor: 11.205

3.  On the probability of fixation of mutant genes in a population.

Authors:  M KIMURA
Journal:  Genetics       Date:  1962-06       Impact factor: 4.562

4.  The speed of adaptation in large asexual populations.

Authors:  Claus O Wilke
Journal:  Genetics       Date:  2004-08       Impact factor: 4.562

5.  Adaptive evolution of asexual populations under Muller's ratchet.

Authors:  Doris Bachtrog; Isabel Gordo
Journal:  Evolution       Date:  2004-07       Impact factor: 3.694

6.  The stochastic edge in adaptive evolution.

Authors:  Eric Brunet; Igor M Rouzine; Claus O Wilke
Journal:  Genetics       Date:  2008-05       Impact factor: 4.562

7.  Population evolution on a multiplicative single-peak fitness landscape.

Authors:  G Woodcock; P G Higgs
Journal:  J Theor Biol       Date:  1996-03-07       Impact factor: 2.691

8.  Modelling evolving populations.

Authors:  A Prügel-Bennett
Journal:  J Theor Biol       Date:  1997-03-07       Impact factor: 2.691

9.  The accumulation of deleterious genes in a population--Muller's Ratchet.

Authors:  J Haigh
Journal:  Theor Popul Biol       Date:  1978-10       Impact factor: 1.570

10.  The effect of linkage on limits to artificial selection.

Authors:  W G Hill; A Robertson
Journal:  Genet Res       Date:  1966-12       Impact factor: 1.588

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  68 in total

1.  Real time forecasting of near-future evolution.

Authors:  Philip J Gerrish; Paul D Sniegowski
Journal:  J R Soc Interface       Date:  2012-04-18       Impact factor: 4.118

2.  Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations.

Authors:  Benjamin H Good; Igor M Rouzine; Daniel J Balick; Oskar Hallatschek; Michael M Desai
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-27       Impact factor: 11.205

3.  Chance and risk in adaptive evolution.

Authors:  Michael Lässig
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-12       Impact factor: 11.205

4.  Dynamic mutation-selection balance as an evolutionary attractor.

Authors:  Sidhartha Goyal; Daniel J Balick; Elizabeth R Jerison; Richard A Neher; Boris I Shraiman; Michael M Desai
Journal:  Genetics       Date:  2012-06-01       Impact factor: 4.562

5.  Genetic linkage and natural selection.

Authors:  N H Barton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-08-27       Impact factor: 6.237

Review 6.  Beneficial mutations and the dynamics of adaptation in asexual populations.

Authors:  Paul D Sniegowski; Philip J Gerrish
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

Review 7.  Mutation and the evolution of recombination.

Authors:  N H Barton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

8.  The population genetics of mutations: good, bad and indifferent.

Authors:  Laurence Loewe; William G Hill
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-04-27       Impact factor: 6.237

9.  The noisy edge of traveling waves.

Authors:  Oskar Hallatschek
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

10.  The effects of a deleterious mutation load on patterns of influenza A/H3N2's antigenic evolution in humans.

Authors:  Katia Koelle; David A Rasmussen
Journal:  Elife       Date:  2015-09-15       Impact factor: 8.140

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