Literature DB >> 17994933

Effect of selection on ancestry: an exactly soluble case and its phenomenological generalization.

E Brunet1, B Derrida, A H Mueller, S Munier.   

Abstract

We consider a family of models describing the evolution under selection of a population whose dynamics can be related to the propagation of noisy traveling waves. For one particular model that we shall call the exponential model, the properties of the traveling wave front can be calculated exactly, as well as the statistics of the genealogy of the population. One striking result is that, for this particular model, the genealogical trees have the same statistics as the trees of replicas in the Parisi mean-field theory of spin glasses. We also find that in the exponential model, the coalescence times along these trees grow like the logarithm of the population size. A phenomenological picture of the propagation of wave fronts that we introduced in a previous work, as well as our numerical data, suggest that these statistics remain valid for a larger class of models, while the coalescence times grow like the cube of the logarithm of the population size.

Mesh:

Year:  2007        PMID: 17994933     DOI: 10.1103/PhysRevE.76.041104

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  19 in total

1.  The noisy edge of traveling waves.

Authors:  Oskar Hallatschek
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

2.  Collective Fluctuations in the Dynamics of Adaptation and Other Traveling Waves.

Authors:  Oskar Hallatschek; Lukas Geyrhofer
Journal:  Genetics       Date:  2016-01-27       Impact factor: 4.562

Review 3.  Effective models and the search for quantitative principles in microbial evolution.

Authors:  Benjamin H Good; Oskar Hallatschek
Journal:  Curr Opin Microbiol       Date:  2018-12-06       Impact factor: 7.934

4.  Predicting evolution from the shape of genealogical trees.

Authors:  Richard A Neher; Colin A Russell; Boris I Shraiman
Journal:  Elife       Date:  2014-11-11       Impact factor: 8.140

5.  Correlated Mutations and Homologous Recombination Within Bacterial Populations.

Authors:  Mingzhi Lin; Edo Kussell
Journal:  Genetics       Date:  2016-12-22       Impact factor: 4.562

6.  Selection-Like Biases Emerge in Population Models with Recurrent Jackpot Events.

Authors:  Oskar Hallatschek
Journal:  Genetics       Date:  2018-08-31       Impact factor: 4.562

7.  Genetic diversity and the structure of genealogies in rapidly adapting populations.

Authors:  Michael M Desai; Aleksandra M Walczak; Daniel S Fisher
Journal:  Genetics       Date:  2012-12-05       Impact factor: 4.562

8.  Pareto genealogies arising from a Poisson branching evolution model with selection.

Authors:  Thierry E Huillet
Journal:  J Math Biol       Date:  2013-02-14       Impact factor: 2.259

9.  How to infer relative fitness from a sample of genomic sequences.

Authors:  Adel Dayarian; Boris I Shraiman
Journal:  Genetics       Date:  2014-04-26       Impact factor: 4.562

Review 10.  Emergence of evolutionary driving forces in pattern-forming microbial populations.

Authors:  Jona Kayser; Carl F Schreck; QinQin Yu; Matti Gralka; Oskar Hallatschek
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-05-26       Impact factor: 6.237

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