Literature DB >> 26819246

Collective Fluctuations in the Dynamics of Adaptation and Other Traveling Waves.

Oskar Hallatschek1, Lukas Geyrhofer2.   

Abstract

The dynamics of adaptation are difficult to predict because it is highly stochastic even in large populations. The uncertainty emerges from random genetic drift arising in a vanguard of particularly fit individuals of the population. Several approaches have been developed to analyze the crucial role of genetic drift on the expected dynamics of adaptation, including the mean fitness of the entire population, or the fate of newly arising beneficial deleterious mutations. However, little is known about how genetic drift causes fluctuations to emerge on the population level, where it becomes palpable as variations in the adaptation speed and the fitness distribution. Yet these phenomena control the decay of genetic diversity and variability in evolution experiments and are key to a truly predictive understanding of evolutionary processes. Here, we show that correlations induced by these emergent fluctuations can be computed at any arbitrary order by a suitable choice of a dynamical constraint. The resulting linear equations exhibit fluctuation-induced terms that amplify short-distance correlations and suppress long-distance ones. These terms, which are in general not small, control the decay of genetic diversity and, for wave-tip dominated ("pulled") waves, lead to anticorrelations between the tip of the wave and the lagging bulk of the population. While it is natural to consider the process of adaptation as a branching random walk in fitness space subject to a constraint (due to finite resources), we show that other traveling wave phenomena in ecology and evolution likewise fall into this class of constrained branching random walks. Our methods, therefore, provide a systematic approach toward analyzing fluctuations in a wide range of population biological processes, such as adaptation, genetic meltdown, species invasions, or epidemics.
Copyright © 2016 by the Genetics Society of America.

Keywords:  Fisher waves; asexual adaptation; exact approaches; higher-order correlation functions; stochastic modeling; traveling-wave models; tuned models

Mesh:

Year:  2016        PMID: 26819246      PMCID: PMC4788118          DOI: 10.1534/genetics.115.181271

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  41 in total

1.  The solitary wave of asexual evolution.

Authors:  Igor M Rouzine; John Wakeley; John M Coffin
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-13       Impact factor: 11.205

2.  The noisy edge of traveling waves.

Authors:  Oskar Hallatschek
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

Review 3.  Theoretical models of selection and mutation on quantitative traits.

Authors:  Toby Johnson; Nick Barton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-07-29       Impact factor: 6.237

4.  Effect of selection on ancestry: an exactly soluble case and its phenomenological generalization.

Authors:  E Brunet; B Derrida; A H Mueller; S Munier
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-10-03

5.  An equivalence principle for the incorporation of favorable mutations in asexual populations.

Authors:  Matthew Hegreness; Noam Shoresh; Daniel Hartl; Roy Kishony
Journal:  Science       Date:  2006-03-17       Impact factor: 47.728

Review 6.  Fitness effects of mutations in bacteria.

Authors:  Isabel Gordo; Lilia Perfeito; Ana Sousa
Journal:  J Mol Microbiol Biotechnol       Date:  2012-01-13

7.  A stochastic model concerning the maintenance of genetic variability in quantitative characters.

Authors:  M Kimura
Journal:  Proc Natl Acad Sci U S A       Date:  1965-09       Impact factor: 11.205

8.  Quantitative evolutionary dynamics using high-resolution lineage tracking.

Authors:  Sasha F Levy; Jamie R Blundell; Sandeep Venkataram; Dmitri A Petrov; Daniel S Fisher; Gavin Sherlock
Journal:  Nature       Date:  2015-02-25       Impact factor: 49.962

9.  Emergent neutrality in adaptive asexual evolution.

Authors:  Stephan Schiffels; Gergely J Szöllosi; Ville Mustonen; Michael Lässig
Journal:  Genetics       Date:  2011-09-16       Impact factor: 4.562

10.  The Utility of Fisher's Geometric Model in Evolutionary Genetics.

Authors:  O Tenaillon
Journal:  Annu Rev Ecol Evol Syst       Date:  2014-11-01       Impact factor: 13.915

View more
  1 in total

1.  Fluctuations uncover a distinct class of traveling waves.

Authors:  Gabriel Birzu; Oskar Hallatschek; Kirill S Korolev
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-02       Impact factor: 11.205

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.