Literature DB >> 21176878

Nucleosome structural studies.

Song Tan1, Curt A Davey.   

Abstract

Chromatin plays a fundamental role in eukaryotic genomic regulation, and the increasing awareness of the importance of epigenetic processes in human health and disease emphasizes the need for understanding the structure and function of the nucleosome. Recent advances in chromatin structural studies, including the first structures of nucleosomes containing the Widom 601 sequence and the structure of a chromatin protein-nucleosome assembly, have provided new insight into stretching of nucleosomal DNA, nucleosome positioning, binding of metal ions, drugs and therapeutic candidates to nucleosomes, and nucleosome recognition by nuclear proteins. These discoveries ensure promising future prospects for unravelling structural attributes of chromatin.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21176878      PMCID: PMC3052702          DOI: 10.1016/j.sbi.2010.11.006

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  65 in total

1.  Structural characterization of the histone variant macroH2A.

Authors:  Srinivas Chakravarthy; Sampath Kumar Y Gundimella; Cecile Caron; Pierre-Yves Perche; John R Pehrson; Saadi Khochbin; Karolin Luger
Journal:  Mol Cell Biol       Date:  2005-09       Impact factor: 4.272

2.  Sequence-dependent base pair opening in DNA double helix.

Authors:  Andrew Krueger; Ekaterina Protozanova; Maxim D Frank-Kamenetskii
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

Review 3.  Chromatin modifications and their function.

Authors:  Tony Kouzarides
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

Review 4.  The role of chromatin during transcription.

Authors:  Bing Li; Michael Carey; Jerry L Workman
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

Review 5.  Higher-order structures of chromatin: the elusive 30 nm fiber.

Authors:  David J Tremethick
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

6.  DNA stretching and extreme kinking in the nucleosome core.

Authors:  Michelle S Ong; Timothy J Richmond; Curt A Davey
Journal:  J Mol Biol       Date:  2007-03-02       Impact factor: 5.469

7.  Nucleosome positioning determinants.

Authors:  Alfonso G Fernandez; John N Anderson
Journal:  J Mol Biol       Date:  2007-06-04       Impact factor: 5.469

8.  Nucleosome core particles containing a poly(dA.dT) sequence element exhibit a locally distorted DNA structure.

Authors:  Yunhe Bao; Cindy L White; Karolin Luger
Journal:  J Mol Biol       Date:  2006-07-05       Impact factor: 5.469

9.  The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA.

Authors:  Andrew J Barbera; Jayanth V Chodaparambil; Brenna Kelley-Clarke; Vladimir Joukov; Johannes C Walter; Karolin Luger; Kenneth M Kaye
Journal:  Science       Date:  2006-02-10       Impact factor: 47.728

10.  A charged and contoured surface on the nucleosome regulates chromatin compaction.

Authors:  Jayanth V Chodaparambil; Andrew J Barbera; Xu Lu; Kenneth M Kaye; Jeffrey C Hansen; Karolin Luger
Journal:  Nat Struct Mol Biol       Date:  2007-10-28       Impact factor: 15.369

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  61 in total

Review 1.  New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Authors:  Karolin Luger; Mekonnen L Dechassa; David J Tremethick
Journal:  Nat Rev Mol Cell Biol       Date:  2012-06-22       Impact factor: 94.444

Review 2.  Nucleosome sliding mechanisms: new twists in a looped history.

Authors:  Felix Mueller-Planitz; Henrike Klinker; Peter B Becker
Journal:  Nat Struct Mol Biol       Date:  2013-09       Impact factor: 15.369

Review 3.  Mechanisms for ATP-dependent chromatin remodelling: the means to the end.

Authors:  Andrew Flaus; Tom Owen-Hughes
Journal:  FEBS J       Date:  2011-09-08       Impact factor: 5.542

4.  Architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR.

Authors:  Hidenori Kato; Hugo van Ingen; Bing-Rui Zhou; Hanqiao Feng; Michael Bustin; Lewis E Kay; Yawen Bai
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-05       Impact factor: 11.205

Review 5.  Molecular basis for chromatin assembly and modification by multiprotein complexes.

Authors:  M Daniel Ricketts; Joseph Han; Mary R Szurgot; Ronen Marmorstein
Journal:  Protein Sci       Date:  2018-12-13       Impact factor: 6.725

6.  Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure.

Authors:  Xiaoyu Liu; Meijing Li; Xian Xia; Xueming Li; Zhucheng Chen
Journal:  Nature       Date:  2017-04-19       Impact factor: 49.962

7.  The Sequence of Nucleosomal DNA Modulates Sliding by the Chd1 Chromatin Remodeler.

Authors:  Jessica Winger; Gregory D Bowman
Journal:  J Mol Biol       Date:  2017-02-08       Impact factor: 5.469

8.  Soaking of DNA into crystals of archaeal RNA polymerase achieved by desalting in droplets.

Authors:  Magdalena N Wojtas; Nicola G A Abrescia
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-08-31

9.  Can nucleosomal DNA be described by an elastic model?: comment on "Sequence-dependent collective properties of DNAs and their role in biological systems" by Pasquale De Santis and Anita Scipioni.

Authors:  Victor B Zhurkin; Wilma K Olson
Journal:  Phys Life Rev       Date:  2013-01-29       Impact factor: 11.025

10.  Combined micrococcal nuclease and exonuclease III digestion reveals precise positions of the nucleosome core/linker junctions: implications for high-resolution nucleosome mapping.

Authors:  Tatiana Nikitina; Difei Wang; Misha Gomberg; Sergei A Grigoryev; Victor B Zhurkin
Journal:  J Mol Biol       Date:  2013-02-28       Impact factor: 5.469

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