Literature DB >> 23587120

Can nucleosomal DNA be described by an elastic model?: comment on "Sequence-dependent collective properties of DNAs and their role in biological systems" by Pasquale De Santis and Anita Scipioni.

Victor B Zhurkin1, Wilma K Olson.   

Abstract

Entities:  

Mesh：

Substances：

Year:  2013        PMID： 23587120      PMCID： PMC3783030          DOI： 10.1016/j.plrev.2013.01.009

Source DB:  PubMed          Journal:  Phys Life Rev        ISSN： 1571-0645            Impact factor:   11.025


× No keyword cloud information.
  17 in total

1.  Gal repressosome contains an antiparallel DNA loop.

Authors:  M Geanacopoulos; G Vasmatzis; V B Zhurkin; S Adhya
Journal:  Nat Struct Biol       Date:  2001-05

2.  Modeling DNA deformations.

Authors:  W K Olson; V B Zhurkin
Journal:  Curr Opin Struct Biol       Date:  2000-06       Impact factor: 6.809

3.  Nucleosomal locations of dominant DNA sequence motifs for histone-DNA interactions and nucleosome positioning.

Authors:  A Thåström; L M Bingham; J Widom
Journal:  J Mol Biol       Date:  2004-05-07       Impact factor: 5.469

4.  Modeling the Lac repressor-operator assembly: the influence of DNA looping on Lac repressor conformation.

Authors:  David Swigon; Bernard D Coleman; Wilma K Olson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-19       Impact factor: 11.205

5.  A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning.

Authors:  Michael Y Tolstorukov; Andrew V Colasanti; David M McCandlish; Wilma K Olson; Victor B Zhurkin
Journal:  J Mol Biol       Date:  2007-05-24       Impact factor: 5.469

6.  DNA sequence-directed organization of chromatin: structure-based computational analysis of nucleosome-binding sequences.

Authors:  Sreekala Balasubramanian; Fei Xu; Wilma K Olson
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

7.  DNA sequence-dependent deformability deduced from protein-DNA crystal complexes.

Authors:  W K Olson; A A Gorin; X J Lu; L M Hock; V B Zhurkin
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-15       Impact factor: 11.205

8.  Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA.

Authors:  W K Olson; N L Marky; R L Jernigan; V B Zhurkin
Journal:  J Mol Biol       Date:  1993-07-20       Impact factor: 5.469

9.  DNA basepair step deformability inferred from molecular dynamics simulations.

Authors:  Filip Lankas; Jirí Sponer; Jörg Langowski; Thomas E Cheatham
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

10.  Using DNA mechanics to predict in vitro nucleosome positions and formation energies.

Authors:  Alexandre V Morozov; Karissa Fortney; Daria A Gaykalova; Vasily M Studitsky; Jonathan Widom; Eric D Siggia
Journal:  Nucleic Acids Res       Date:  2009-06-09       Impact factor: 16.971
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.