Literature DB >> 22722606

New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Karolin Luger1, Mekonnen L Dechassa, David J Tremethick.   

Abstract

The compaction of genomic DNA into chromatin has profound implications for the regulation of key processes such as transcription, replication and DNA repair. Nucleosomes, the repeating building blocks of chromatin, vary in the composition of their histone protein components. This is the result of the incorporation of variant histones and post-translational modifications of histone amino acid side chains. The resulting changes in nucleosome structure, stability and dynamics affect the compaction of nucleosomal arrays into higher-order structures. It is becoming clear that chromatin structures are not nearly as uniform and regular as previously assumed. This implies that chromatin structure must also be viewed in the context of specific biological functions.

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Year:  2012        PMID: 22722606      PMCID: PMC3408961          DOI: 10.1038/nrm3382

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  158 in total

1.  Nucleosome sequence preferences influence in vivo nucleosome organization.

Authors:  Noam Kaplan; Irene Moore; Yvonne Fondufe-Mittendorf; Andrea J Gossett; Desiree Tillo; Yair Field; Timothy R Hughes; Jason D Lieb; Jonathan Widom; Eran Segal
Journal:  Nat Struct Mol Biol       Date:  2010-08       Impact factor: 15.369

2.  A preoccupied position on nucleosomes.

Authors:  B Franklin Pugh
Journal:  Nat Struct Mol Biol       Date:  2010-08       Impact factor: 15.369

Review 3.  Chromatin structure: does the 30-nm fibre exist in vivo?

Authors:  Kazuhiro Maeshima; Saera Hihara; Mikhail Eltsov
Journal:  Curr Opin Cell Biol       Date:  2010-03-24       Impact factor: 8.382

4.  Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones.

Authors:  Roger B Deal; Jorja G Henikoff; Steven Henikoff
Journal:  Science       Date:  2010-05-28       Impact factor: 47.728

5.  A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding.

Authors:  Monique Floer; Xin Wang; Vidya Prabhu; Georgina Berrozpe; Santosh Narayan; Dan Spagna; David Alvarez; Jude Kendall; Alexander Krasnitz; Asya Stepansky; James Hicks; Gene O Bryant; Mark Ptashne
Journal:  Cell       Date:  2010-04-30       Impact factor: 41.582

6.  SWI/SNF has intrinsic nucleosome disassembly activity that is dependent on adjacent nucleosomes.

Authors:  Mekonnen Lemma Dechassa; Abdellah Sabri; Santhi Pondugula; Stefan R Kassabov; Nilanjana Chatterjee; Michael P Kladde; Blaine Bartholomew
Journal:  Mol Cell       Date:  2010-05-28       Impact factor: 17.970

7.  The histone chaperone Nap1 promotes nucleosome assembly by eliminating nonnucleosomal histone DNA interactions.

Authors:  Andrew J Andrews; Xu Chen; Alexander Zevin; Laurie A Stargell; Karolin Luger
Journal:  Mol Cell       Date:  2010-03-26       Impact factor: 17.970

Review 8.  Histone H3 lysine 4 (H3K4) methylation in development and differentiation.

Authors:  Joel C Eissenberg; Ali Shilatifard
Journal:  Dev Biol       Date:  2009-08-21       Impact factor: 3.582

Review 9.  Nucleosome positioning: how is it established, and why does it matter?

Authors:  Marta Radman-Livaja; Oliver J Rando
Journal:  Dev Biol       Date:  2009-06-13       Impact factor: 3.582

10.  Structure of RCC1 chromatin factor bound to the nucleosome core particle.

Authors:  Ravindra D Makde; Joseph R England; Hemant P Yennawar; Song Tan
Journal:  Nature       Date:  2010-08-25       Impact factor: 49.962

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  277 in total

Review 1.  Regulation of recombination and genomic maintenance.

Authors:  Wolf-Dietrich Heyer
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-08-03       Impact factor: 10.005

2.  Effects of MacroH2A and H2A.Z on Nucleosome Dynamics as Elucidated by Molecular Dynamics Simulations.

Authors:  Samuel Bowerman; Jeff Wereszczynski
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

3.  Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes.

Authors:  Sergei A Grigoryev; Gavin Bascom; Jenna M Buckwalter; Michael B Schubert; Christopher L Woodcock; Tamar Schlick
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

Review 4.  Intra- and inter-nucleosome interactions of the core histone tail domains in higher-order chromatin structure.

Authors:  Sharon Pepenella; Kevin J Murphy; Jeffrey J Hayes
Journal:  Chromosoma       Date:  2013-08-31       Impact factor: 4.316

5.  A Light-Inducible Strain for Genome-Wide Histone Turnover Profiling in Neurospora crassa.

Authors:  William K Storck; Sabrina Z Abdulla; Michael R Rountree; Vincent T Bicocca; Eric U Selker
Journal:  Genetics       Date:  2020-05-01       Impact factor: 4.562

Review 6.  PWWP domains and their modes of sensing DNA and histone methylated lysines.

Authors:  Germana B Rona; Elis C A Eleutherio; Anderson S Pinheiro
Journal:  Biophys Rev       Date:  2016-01-14

Review 7.  Pioneer factors and their in vitro identification methods.

Authors:  Xinyang Yu; Michael J Buck
Journal:  Mol Genet Genomics       Date:  2020-04-15       Impact factor: 3.291

8.  Distinct Cellular Assembly Stoichiometry of Polycomb Complexes on Chromatin Revealed by Single-molecule Chromatin Immunoprecipitation Imaging.

Authors:  Roubina Tatavosian; Chao Yu Zhen; Huy Nguyen Duc; Maggie M Balas; Aaron M Johnson; Xiaojun Ren
Journal:  J Biol Chem       Date:  2015-09-17       Impact factor: 5.157

9.  Subnucleosomal structures and nucleosome asymmetry across a genome.

Authors:  Ho Sung Rhee; Alain R Bataille; Liye Zhang; B Franklin Pugh
Journal:  Cell       Date:  2014-12-04       Impact factor: 41.582

Review 10.  Chromatin remodeling at DNA double-strand breaks.

Authors:  Brendan D Price; Alan D D'Andrea
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

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