Literature DB >> 17965723

A charged and contoured surface on the nucleosome regulates chromatin compaction.

Jayanth V Chodaparambil1, Andrew J Barbera, Xu Lu, Kenneth M Kaye, Jeffrey C Hansen, Karolin Luger.   

Abstract

Local nucleosome-nucleosome interactions in cis drive chromatin folding, whereas interactions in trans lead to fiber-fiber oligomerization. Here we show that peptides derived from the histone H4 tail and Kaposi's sarcoma herpesvirus LANA protein can replace the endogenous H4 tail, resulting in array folding and oligomerization. Neutralization of a LANA binding site on the histone surface enhanced rather than abolished nucleosome-nucleosome interactions. We maintain that the contoured nucleosome surface is centrally involved in regulating chromatin condensation.

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Year:  2007        PMID: 17965723      PMCID: PMC2366819          DOI: 10.1038/nsmb1334

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  15 in total

1.  Crystal structure of a nucleosome core particle containing the variant histone H2A.Z.

Authors:  R K Suto; M J Clarkson; D J Tremethick; K Luger
Journal:  Nat Struct Biol       Date:  2000-12

Review 2.  Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions.

Authors:  Jeffrey C Hansen
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001-10-25

3.  Chromatin fiber folding: requirement for the histone H4 N-terminal tail.

Authors:  Benedetta Dorigo; Thomas Schalch; Kerstin Bystricky; Timothy J Richmond
Journal:  J Mol Biol       Date:  2003-03-14       Impact factor: 5.469

4.  Nucleosome arrays reveal the two-start organization of the chromatin fiber.

Authors:  Benedetta Dorigo; Thomas Schalch; Alexandra Kulangara; Sylwia Duda; Rasmus R Schroeder; Timothy J Richmond
Journal:  Science       Date:  2004-11-26       Impact factor: 47.728

5.  A core nucleosome surface crucial for transcriptional silencing.

Authors:  Jeong-Hyun Park; Michael S Cosgrove; Elaine Youngman; Cynthia Wolberger; Jef D Boeke
Journal:  Nat Genet       Date:  2002-09-16       Impact factor: 38.330

6.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

7.  Reversible oligonucleosome self-association: dependence on divalent cations and core histone tail domains.

Authors:  P M Schwarz; A Felthauser; T M Fletcher; J C Hansen
Journal:  Biochemistry       Date:  1996-04-02       Impact factor: 3.162

8.  Global analysis of functional surfaces of core histones with comprehensive point mutants.

Authors:  Kazuko Matsubara; Norihiko Sano; Takashi Umehara; Masami Horikoshi
Journal:  Genes Cells       Date:  2007-01       Impact factor: 1.891

9.  Effect of acetylation on the binding of N-terminal peptides of histone H4 to DNA.

Authors:  P D Cary; C Crane-Robinson; E M Bradbury; G H Dixon
Journal:  Eur J Biochem       Date:  1982-09

10.  The core histone N-terminal tail domains function independently and additively during salt-dependent oligomerization of nucleosomal arrays.

Authors:  Faye Gordon; Karolin Luger; Jeffrey C Hansen
Journal:  J Biol Chem       Date:  2005-07-19       Impact factor: 5.157

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  56 in total

Review 1.  Toward convergence of experimental studies and theoretical modeling of the chromatin fiber.

Authors:  Tamar Schlick; Jeff Hayes; Sergei Grigoryev
Journal:  J Biol Chem       Date:  2011-12-07       Impact factor: 5.157

Review 2.  The latency-associated nuclear antigen, a multifunctional protein central to Kaposi's sarcoma-associated herpesvirus latency.

Authors:  Mary E Ballestas; Kenneth M Kaye
Journal:  Future Microbiol       Date:  2011-12       Impact factor: 3.165

3.  Theoretical analysis of the role of chromatin interactions in long-range action of enhancers and insulators.

Authors:  Swagatam Mukhopadhyay; Paul Schedl; Vasily M Studitsky; Anirvan M Sengupta
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-28       Impact factor: 11.205

4.  Internucleosomal interactions mediated by histone tails allow distant communication in chromatin.

Authors:  Olga I Kulaeva; Guohui Zheng; Yury S Polikanov; Andrew V Colasanti; Nicolas Clauvelin; Swagatam Mukhopadhyay; Anirvan M Sengupta; Vasily M Studitsky; Wilma K Olson
Journal:  J Biol Chem       Date:  2012-04-19       Impact factor: 5.157

5.  The effect of linker histone's nucleosome binding affinity on chromatin unfolding mechanisms.

Authors:  Rosana Collepardo-Guevara; Tamar Schlick
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

6.  Role of direct interactions between the histone H4 Tail and the H2A core in long range nucleosome contacts.

Authors:  Divya Sinha; Michael A Shogren-Knaak
Journal:  J Biol Chem       Date:  2010-03-29       Impact factor: 5.157

Review 7.  Nucleosome structural studies.

Authors:  Song Tan; Curt A Davey
Journal:  Curr Opin Struct Biol       Date:  2010-12-19       Impact factor: 6.809

Review 8.  Chromatin dynamics and the repair of DNA double strand breaks.

Authors:  Ye Xu; Brendan D Price
Journal:  Cell Cycle       Date:  2011-01-15       Impact factor: 4.534

Review 9.  New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Authors:  Karolin Luger; Mekonnen L Dechassa; David J Tremethick
Journal:  Nat Rev Mol Cell Biol       Date:  2012-06-22       Impact factor: 94.444

Review 10.  Intra- and inter-nucleosome interactions of the core histone tail domains in higher-order chromatin structure.

Authors:  Sharon Pepenella; Kevin J Murphy; Jeffrey J Hayes
Journal:  Chromosoma       Date:  2013-08-31       Impact factor: 4.316

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