Literature DB >> 21120863

In-cell protein NMR and protein leakage.

Christopher O Barnes1, Gary J Pielak.   

Abstract

In-cell nuclear magnetic resonance spectroscopy is a tool for studying proteins under physiologically relevant conditions. In some instances, however, protein signals from leaked protein are observed in the liquid surrounding the cells. Here, we examine the expression of four proteins in Escherichia coli. We describe the controls that should be used for in-cell NMR experiments and show that leakage is likely when the protein being studied exceeds ∼20% of the total cellular protein.
© 2010 Wiley-Liss, Inc.

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Year:  2011        PMID: 21120863      PMCID: PMC3016450          DOI: 10.1002/prot.22906

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  31 in total

1.  Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition.

Authors:  S E Jackson; A R Fersht
Journal:  Biochemistry       Date:  1991-10-29       Impact factor: 3.162

2.  Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds.

Authors:  Paul Schanda; Bernhard Brutscher
Journal:  J Am Chem Soc       Date:  2005-06-08       Impact factor: 15.419

3.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

4.  Effects of proteins on protein diffusion.

Authors:  Yaqiang Wang; Conggang Li; Gary J Pielak
Journal:  J Am Chem Soc       Date:  2010-07-14       Impact factor: 15.419

5.  Temperature-induced reversible conformational change in the first 100 residues of alpha-synuclein.

Authors:  Brian C McNulty; Ashutosh Tripathy; Gregory B Young; Lisa M Charlton; Jillian Orans; Gary J Pielak
Journal:  Protein Sci       Date:  2006-02-01       Impact factor: 6.725

6.  Protein (19)F NMR in Escherichia coli.

Authors:  Conggang Li; Gui-Fang Wang; Yaqiang Wang; Rachel Creager-Allen; Evan A Lutz; Heidi Scronce; Kristin M Slade; Rebecca A S Ruf; Ryan A Mehl; Gary J Pielak
Journal:  J Am Chem Soc       Date:  2010-01-13       Impact factor: 15.419

7.  Backbone dynamics of chymotrypsin inhibitor 2: effect of breaking the active site bond and its implications for the mechanism of inhibition of serine proteases.

Authors:  G L Shaw; B Davis; J Keeler; A R Fersht
Journal:  Biochemistry       Date:  1995-02-21       Impact factor: 3.162

8.  15N NMR spin relaxation dispersion study of the molecular crowding effects on protein folding under native conditions.

Authors:  Xuanjun Ai; Zheng Zhou; Yawen Bai; Wing-Yiu Choy
Journal:  J Am Chem Soc       Date:  2006-03-29       Impact factor: 15.419

9.  Protein nuclear magnetic resonance under physiological conditions.

Authors:  Gary J Pielak; Conggang Li; Andrew C Miklos; Alexander P Schlesinger; Kristin M Slade; Gui-Fang Wang; Imola G Zigoneanu
Journal:  Biochemistry       Date:  2009-01-20       Impact factor: 3.162

10.  Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli.

Authors:  S B Zimmerman; S O Trach
Journal:  J Mol Biol       Date:  1991-12-05       Impact factor: 5.469

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  20 in total

1.  Hydrogen exchange of disordered proteins in Escherichia coli.

Authors:  Austin E Smith; Larry Z Zhou; Gary J Pielak
Journal:  Protein Sci       Date:  2015-03-02       Impact factor: 6.725

Review 2.  To be disordered or not to be disordered: is that still a question for proteins in the cell?

Authors:  Kris Pauwels; Pierre Lebrun; Peter Tompa
Journal:  Cell Mol Life Sci       Date:  2017-06-13       Impact factor: 9.261

Review 3.  Soft interactions and crowding.

Authors:  Mohona Sarkar; Conggang Li; Gary J Pielak
Journal:  Biophys Rev       Date:  2013-02-21

4.  Exploring weak, transient protein--protein interactions in crowded in vivo environments by in-cell nuclear magnetic resonance spectroscopy.

Authors:  Qinghua Wang; Anastasia Zhuravleva; Lila M Gierasch
Journal:  Biochemistry       Date:  2011-10-05       Impact factor: 3.162

5.  Understanding the mechanism of proteasome 20S core particle gating.

Authors:  Michael P Latham; Ashok Sekhar; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-31       Impact factor: 11.205

Review 6.  Interaction proteomics by using in-cell NMR spectroscopy.

Authors:  Leonard Breindel; David S Burz; Alexander Shekhtman
Journal:  J Proteomics       Date:  2018-02-08       Impact factor: 4.044

7.  Amide proton exchange of a dynamic loop in cell extracts.

Authors:  Austin E Smith; Mohona Sarkar; Gregory B Young; Gary J Pielak
Journal:  Protein Sci       Date:  2013-08-20       Impact factor: 6.725

8.  Macromolecular crowding fails to fold a globular protein in cells.

Authors:  Alexander P Schlesinger; Yaqiang Wang; Xavier Tadeo; Oscar Millet; Gary J Pielak
Journal:  J Am Chem Soc       Date:  2011-05-10       Impact factor: 15.419

9.  Controlling and quantifying protein concentration in Escherichia coli.

Authors:  Shannon L Speer; Alex J Guseman; Jon B Patteson; Brandie M Ehrmann; Gary J Pielak
Journal:  Protein Sci       Date:  2019-05-22       Impact factor: 6.725

Review 10.  In-Cell NMR Spectroscopy of Intrinsically Disordered Proteins.

Authors:  Nicholas Sciolino; David S Burz; Alexander Shekhtman
Journal:  Proteomics       Date:  2019-01-15       Impact factor: 3.984

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