Literature DB >> 31054180

Controlling and quantifying protein concentration in Escherichia coli.

Shannon L Speer1, Alex J Guseman1, Jon B Patteson1, Brandie M Ehrmann1, Gary J Pielak1,2,3,4.   

Abstract

The cellular environment is dynamic and complex, involving thousands of different macromolecules with total concentrations of hundreds of grams per liter. However, most biochemistry is conducted in dilute buffer where the concentration of macromolecules is less than 10 g/L. High concentrations of macromolecules affect protein stability, function, and protein complex formation, but to understand these phenomena fully we need to know the concentration of the test protein in cells. Here, we quantify the concentration of an overexpressed recombinant protein, a variant of the B1 domain of protein G, in Tuner (DE3)™ Escherichia coli cells as a function of inducer concentration. We find that the protein expression level is controllable, and expression saturates at over 2 mM upon induction with 0.4 mM isopropyl β-d-thiogalactoside. We discuss the results in terms of what can and cannot be learned from in-cell protein NMR studies in E. coli.
© 2019 The Protein Society.

Entities:  

Keywords:  zzm321990Escherichia coli; flow cytometry; in-cell NMR; mass spectrometry; protein expression

Mesh:

Substances:

Year:  2019        PMID: 31054180      PMCID: PMC6566559          DOI: 10.1002/pro.3637

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  27 in total

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Authors:  T Bouvier; M Troussellier; A Anzil; C Courties; P Servais
Journal:  Cytometry       Date:  2001-07-01

Review 2.  Macromolecular crowding: obvious but underappreciated.

Authors:  R J Ellis
Journal:  Trends Biochem Sci       Date:  2001-10       Impact factor: 13.807

3.  A protein contortionist: core mutations of GB1 that induce dimerization and domain swapping.

Authors:  In-Ja L Byeon; John M Louis; Angela M Gronenborn
Journal:  J Mol Biol       Date:  2003-10-10       Impact factor: 5.469

4.  FlgM gains structure in living cells.

Authors:  Matthew M Dedmon; Chetan N Patel; Gregory B Young; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

Review 5.  A cell is more than the sum of its (dilute) parts: A brief history of quinary structure.

Authors:  Rachel D Cohen; Gary J Pielak
Journal:  Protein Sci       Date:  2017-02-13       Impact factor: 6.725

Review 6.  Soft interactions and crowding.

Authors:  Mohona Sarkar; Conggang Li; Gary J Pielak
Journal:  Biophys Rev       Date:  2013-02-21

7.  Protein nuclear magnetic resonance under physiological conditions.

Authors:  Gary J Pielak; Conggang Li; Andrew C Miklos; Alexander P Schlesinger; Kristin M Slade; Gui-Fang Wang; Imola G Zigoneanu
Journal:  Biochemistry       Date:  2009-01-20       Impact factor: 3.162

8.  Effects of recombinant protein expression on green fluorescent protein diffusion in Escherichia coli.

Authors:  Kristin M Slade; Rachael Baker; Michael Chua; Nancy L Thompson; Gary J Pielak
Journal:  Biochemistry       Date:  2009-06-16       Impact factor: 3.162

9.  Optimizing optical flow cytometry for cell volume-based sorting and analysis.

Authors:  Amit Tzur; Jodene K Moore; Paul Jorgensen; Howard M Shapiro; Marc W Kirschner
Journal:  PLoS One       Date:  2011-01-20       Impact factor: 3.240

10.  In-cell biochemistry using NMR spectroscopy.

Authors:  David S Burz; Alexander Shekhtman
Journal:  PLoS One       Date:  2008-07-02       Impact factor: 3.240

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  3 in total

1.  The intracellular environment affects protein-protein interactions.

Authors:  Shannon L Speer; Wenwen Zheng; Xin Jiang; I-Te Chu; Alex J Guseman; Maili Liu; Gary J Pielak; Conggang Li
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-16       Impact factor: 11.205

2.  High intracellular stability of the spidroin N-terminal domain in spite of abundant amyloidogenic segments revealed by in-cell hydrogen/deuterium exchange mass spectrometry.

Authors:  Margit Kaldmäe; Axel Leppert; Gefei Chen; Medoune Sarr; Cagla Sahin; Kerstin Nordling; Nina Kronqvist; Marta Gonzalvo-Ulla; Nicolas Fritz; Axel Abelein; Sonia Laίn; Henrik Biverstål; Hans Jörnvall; David P Lane; Anna Rising; Jan Johansson; Michael Landreh
Journal:  FEBS J       Date:  2019-12-20       Impact factor: 5.542

3.  FlopR: An Open Source Software Package for Calibration and Normalization of Plate Reader and Flow Cytometry Data.

Authors:  Alex J H Fedorec; Clare M Robinson; Ke Yan Wen; Chris P Barnes
Journal:  ACS Synth Biol       Date:  2020-09-01       Impact factor: 5.110

  3 in total

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