Literature DB >> 20050707

Protein (19)F NMR in Escherichia coli.

Conggang Li1, Gui-Fang Wang, Yaqiang Wang, Rachel Creager-Allen, Evan A Lutz, Heidi Scronce, Kristin M Slade, Rebecca A S Ruf, Ryan A Mehl, Gary J Pielak.   

Abstract

Although overexpression and (15)N enrichment facilitate the observation of resonances from disordered proteins in Escherichia coli, (15)N enrichment alone is insufficient for detecting most globular proteins. Here, we explain this dichotomy and overcome the problem while extending the capability of in-cell NMR by using (19)F-labeled proteins. Resonances from small (approximately 10 kDa) globular proteins containing the amino acid analogue 3-fluoro-tyrosine can be observed in cells, but for larger proteins the (19)F resonances are broadened beyond detection. Incorporating the amino acid analogue trifluoromethyl-L-phenylalanine allows larger proteins (up to 100 kDa) to be observed in cells. We also show that site-specific structural and dynamic information about both globular and disordered proteins can be obtained inside cells by using (19)F NMR.

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Year:  2010        PMID: 20050707      PMCID: PMC2815348          DOI: 10.1021/ja907966n

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  54 in total

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5.  Hidden dynamic allostery in a PDZ domain.

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6.  Cell water dynamics on multiple time scales.

Authors:  Erik Persson; Bertil Halle
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7.  Protein nuclear magnetic resonance under physiological conditions.

Authors:  Gary J Pielak; Conggang Li; Andrew C Miklos; Alexander P Schlesinger; Kristin M Slade; Gui-Fang Wang; Imola G Zigoneanu
Journal:  Biochemistry       Date:  2009-01-20       Impact factor: 3.162

8.  Translational and rotational diffusion of a small globular protein under crowded conditions.

Authors:  Conggang Li; Yaqiang Wang; Gary J Pielak
Journal:  J Phys Chem B       Date:  2009-10-08       Impact factor: 2.991

9.  Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans.

Authors:  Johan Malmström; Martin Beck; Alexander Schmidt; Vinzenz Lange; Eric W Deutsch; Ruedi Aebersold
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10.  Protein abundance profiling of the Escherichia coli cytosol.

Authors:  Yasushi Ishihama; Thorsten Schmidt; Juri Rappsilber; Matthias Mann; F Ulrich Hartl; Michael J Kerner; Dmitrij Frishman
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  61 in total

Review 1.  Designer proteins: applications of genetic code expansion in cell biology.

Authors:  Lloyd Davis; Jason W Chin
Journal:  Nat Rev Mol Cell Biol       Date:  2012-02-15       Impact factor: 94.444

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3.  Ribosome Mediated Quinary Interactions Modulate In-Cell Protein Activities.

Authors:  Christopher M DeMott; Subhabrata Majumder; David S Burz; Sergey Reverdatto; Alexander Shekhtman
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4.  Incorporation of fluorotyrosines into ribonucleotide reductase using an evolved, polyspecific aminoacyl-tRNA synthetase.

Authors:  Ellen C Minnihan; Douglas D Young; Peter G Schultz; JoAnne Stubbe
Journal:  J Am Chem Soc       Date:  2011-09-21       Impact factor: 15.419

Review 5.  A cell is more than the sum of its (dilute) parts: A brief history of quinary structure.

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6.  A comparison of chemical shift sensitivity of trifluoromethyl tags: optimizing resolution in ¹⁹F NMR studies of proteins.

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7.  19F NMR studies of α-synuclein-membrane interactions.

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Journal:  Protein Sci       Date:  2010-09       Impact factor: 6.725

8.  Alternative pathways of human islet amyloid polypeptide aggregation distinguished by (19)f nuclear magnetic resonance-detected kinetics of monomer consumption.

Authors:  Yuta Suzuki; Jeffrey R Brender; Kevin Hartman; Ayyalusamy Ramamoorthy; E Neil G Marsh
Journal:  Biochemistry       Date:  2012-10-01       Impact factor: 3.162

9.  Resolution of oligomeric species during the aggregation of Aβ1-40 using (19)F NMR.

Authors:  Yuta Suzuki; Jeffrey R Brender; Molly T Soper; Janarthanan Krishnamoorthy; Yunlong Zhou; Brandon T Ruotolo; Nicholas A Kotov; Ayyalusamy Ramamoorthy; E Neil G Marsh
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10.  Total Cellular RNA Modulates Protein Activity.

Authors:  Subhabrata Majumder; Christopher M DeMott; Sergey Reverdatto; David S Burz; Alexander Shekhtman
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