Literature DB >> 25611326

Hydrogen exchange of disordered proteins in Escherichia coli.

Austin E Smith1, Larry Z Zhou, Gary J Pielak.   

Abstract

A truly disordered protein lacks a stable fold and its backbone amide protons exchange with solvent at rates predicted from studies of unstructured peptides. We have measured the exchange rates of two model disordered proteins, FlgM and α-synuclein, in buffer and in Escherichia coli using the NMR experiment, SOLEXSY. The rates are similar in buffer and cells and are close to the rates predicted from data on small, unstructured peptides. This result indicates that true disorder can persist inside the crowded cellular interior and that weak interactions between proteins and macromolecules in cells do not necessarily affect intrinsic rates of exchange.
© 2015 The Protein Society.

Entities:  

Keywords:  SOLEXSY; amide proton exchange; in-cell NMR; intrinsically disordered proteins; macromolecular crowding

Mesh:

Substances:

Year:  2015        PMID: 25611326      PMCID: PMC4420520          DOI: 10.1002/pro.2643

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  53 in total

1.  NMR determination of pKa values in α-synuclein.

Authors:  Robyn L Croke; Sharadrao M Patil; Jason Quevreaux; Debra A Kendall; Andrei T Alexandrescu
Journal:  Protein Sci       Date:  2010-12-13       Impact factor: 6.725

Review 2.  Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences.

Authors:  Huan-Xiang Zhou; Germán Rivas; Allen P Minton
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

3.  In-cell protein NMR and protein leakage.

Authors:  Christopher O Barnes; Gary J Pielak
Journal:  Proteins       Date:  2011-02

Review 4.  Hydrogen exchange and structural dynamics of proteins and nucleic acids.

Authors:  S W Englander; N R Kallenbach
Journal:  Q Rev Biophys       Date:  1983-11       Impact factor: 5.318

5.  15N H/D-SOLEXSY experiment for accurate measurement of amide solvent exchange rates: application to denatured drkN SH3.

Authors:  Veniamin Chevelkov; Yi Xue; D Krishna Rao; Julie D Forman-Kay; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2010-02-27       Impact factor: 2.835

6.  Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm.

Authors:  Sean R McGuffee; Adrian H Elcock
Journal:  PLoS Comput Biol       Date:  2010-03-05       Impact factor: 4.475

7.  Hydrogen exchange of monomeric alpha-synuclein shows unfolded structure persists at physiological temperature and is independent of molecular crowding in Escherichia coli.

Authors:  Robyn L Croke; Christine O Sallum; Emma Watson; Eric D Watt; Andrei T Alexandrescu
Journal:  Protein Sci       Date:  2008-05-20       Impact factor: 6.725

8.  Polarization and polarizability assessed by protein amide acidity.

Authors:  Griselda Hernández; Janet S Anderson; David M LeMaster
Journal:  Biochemistry       Date:  2009-07-14       Impact factor: 3.162

9.  Amino acid selective unlabeling for sequence specific resonance assignments in proteins.

Authors:  B Krishnarjuna; Garima Jaipuria; Anushikha Thakur; Patrick D'Silva; Hanudatta S Atreya
Journal:  J Biomol NMR       Date:  2010-12-09       Impact factor: 2.835

10.  BioMagResBank.

Authors:  Eldon L Ulrich; Hideo Akutsu; Jurgen F Doreleijers; Yoko Harano; Yannis E Ioannidis; Jundong Lin; Miron Livny; Steve Mading; Dimitri Maziuk; Zachary Miller; Eiichi Nakatani; Christopher F Schulte; David E Tolmie; R Kent Wenger; Hongyang Yao; John L Markley
Journal:  Nucleic Acids Res       Date:  2007-11-04       Impact factor: 16.971

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  16 in total

Review 1.  A Unique Tool for Cellular Structural Biology: In-cell NMR.

Authors:  Enrico Luchinat; Lucia Banci
Journal:  J Biol Chem       Date:  2015-12-16       Impact factor: 5.157

2.  In-cell thermodynamics and a new role for protein surfaces.

Authors:  Austin E Smith; Larry Z Zhou; Annelise H Gorensek; Michael Senske; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-11       Impact factor: 11.205

Review 3.  To be disordered or not to be disordered: is that still a question for proteins in the cell?

Authors:  Kris Pauwels; Pierre Lebrun; Peter Tompa
Journal:  Cell Mol Life Sci       Date:  2017-06-13       Impact factor: 9.261

Review 4.  Intrinsically disordered proteins in crowded milieu: when chaos prevails within the cellular gumbo.

Authors:  Alexander V Fonin; April L Darling; Irina M Kuznetsova; Konstantin K Turoverov; Vladimir N Uversky
Journal:  Cell Mol Life Sci       Date:  2018-07-31       Impact factor: 9.261

5.  Protein Composition Determines the Effect of Crowding on the Properties of Disordered Proteins.

Authors:  Cayla M Miller; Young C Kim; Jeetain Mittal
Journal:  Biophys J       Date:  2016-07-12       Impact factor: 4.033

6.  Molecular Effects of Concentrated Solutes on Protein Hydration, Dynamics, and Electrostatics.

Authors:  Luciano A Abriata; Enrico Spiga; Matteo Dal Peraro
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

Review 7.  Functional advantages of dynamic protein disorder.

Authors:  Rebecca B Berlow; H Jane Dyson; Peter E Wright
Journal:  FEBS Lett       Date:  2015-06-11       Impact factor: 4.124

8.  Characterization of hydrogen bonding motifs in proteins: hydrogen elimination monitoring by ultraviolet photodissociation mass spectrometry.

Authors:  Lindsay J Morrison; Wenrui Chai; Jake A Rosenberg; Graeme Henkelman; Jennifer S Brodbelt
Journal:  Phys Chem Chem Phys       Date:  2017-08-02       Impact factor: 3.676

Review 9.  In-Cell NMR Spectroscopy of Intrinsically Disordered Proteins.

Authors:  Nicholas Sciolino; David S Burz; Alexander Shekhtman
Journal:  Proteomics       Date:  2019-01-15       Impact factor: 3.984

10.  Intracellular pH modulates quinary structure.

Authors:  Rachel D Cohen; Alex J Guseman; Gary J Pielak
Journal:  Protein Sci       Date:  2015-08-30       Impact factor: 6.725

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