Literature DB >> 20939587

High resolution 1H-detected solid-state NMR spectroscopy of protein aliphatic resonances: access to tertiary structure information.

Sam Asami1, Peter Schmieder, Bernd Reif.   

Abstract

Biological magic angle spinning (MAS) solid-state nuclear magnetic resonance spectroscopy has developed rapidly over the past two decades. For the structure determination of a protein by solid-state NMR, routinely (13)C,(13)C distance restraints as well as dihedral restraints are employed. In protonated samples, this is achieved by growing the bacterium on a medium which contains [1,3]-(13)C glycerol or [2]-(13)C glycerol to dilute the (13)C spin system. Labeling schemes, which rely on heteronuclei, are insensitive both for detection and in terms of quantification of distances, since they are relying on low-γ nuclei. Proton detection can in principle provide a gain in sensitivity by a factor of 8 and 31, compared to the (13)C or (15)N detected version of the experiment. We report here a new labeling scheme, which enables (1)H-detection of aliphatic resonances with high resolution in MAS solid-state NMR spectroscopy. We prepared microcrystals of the SH3 domain of chicken α-spectrin with 5% protonation at nonexchangeable sites and obtained line widths on the order of 25 Hz for aliphatic (1)H resonances. We show further that (13)C resolved 3D-(1)H,(1)H correlation experiments yield access to long-range proton-proton distances in the protein.

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Year:  2010        PMID: 20939587     DOI: 10.1021/ja106170h

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  28 in total

1.  Three-dimensional deuterium-carbon correlation experiments for high-resolution solid-state MAS NMR spectroscopy of large proteins.

Authors:  Daniela Lalli; Paul Schanda; Anup Chowdhury; Joren Retel; Matthias Hiller; Victoria A Higman; Lieselotte Handel; Vipin Agarwal; Bernd Reif; Barth van Rossum; Umit Akbey; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2011-10-25       Impact factor: 2.835

2.  Assignment strategies for aliphatic protons in the solid-state in randomly protonated proteins.

Authors:  Sam Asami; Bernd Reif
Journal:  J Biomol NMR       Date:  2011-12-04       Impact factor: 2.835

3.  Backbone assignment of perdeuterated proteins using long-range H/C-dipolar transfers.

Authors:  Rasmus Linser
Journal:  J Biomol NMR       Date:  2011-12-14       Impact factor: 2.835

4.  Asynchronous through-bond homonuclear isotropic mixing: application to carbon-carbon transfer in perdeuterated proteins under MAS.

Authors:  Natalia Kulminskaya; Suresh Kumar Vasa; Karin Giller; Stefan Becker; Rasmus Linser
Journal:  J Biomol NMR       Date:  2015-08-30       Impact factor: 2.835

5.  Proton detection for signal enhancement in solid-state NMR experiments on mobile species in membrane proteins.

Authors:  Meaghan E Ward; Emily Ritz; Mumdooh A M Ahmed; Vladimir V Bamm; George Harauz; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Biomol NMR       Date:  2015-10-22       Impact factor: 2.835

6.  Side-chain to backbone correlations from solid-state NMR of perdeuterated proteins through combined excitation and long-range magnetization transfers.

Authors:  Rasmus Linser
Journal:  J Biomol NMR       Date:  2011-08-07       Impact factor: 2.835

Review 7.  Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.

Authors:  Leonid S Brown; Vladimir Ladizhansky
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

8.  Partially-deuterated samples of HET-s(218-289) fibrils: assignment and deuterium isotope effect.

Authors:  Albert A Smith; Francesco Ravotti; Emilie Testori; Riccardo Cadalbert; Matthias Ernst; Anja Böckmann; Beat H Meier
Journal:  J Biomol NMR       Date:  2017-01-10       Impact factor: 2.835

9.  Optimal degree of protonation for ¹H detection of aliphatic sites in randomly deuterated proteins as a function of the MAS frequency.

Authors:  Sam Asami; Kathrin Szekely; Paul Schanda; Beat H Meier; Bernd Reif
Journal:  J Biomol NMR       Date:  2012-08-23       Impact factor: 2.835

10.  Site-specific analysis of heteronuclear Overhauser effects in microcrystalline proteins.

Authors:  Juan Miguel Lopez del Amo; Vipin Agarwal; Riddhiman Sarkar; Justin Porter; Sam Asami; Martin Rübbelke; Uwe Fink; Yi Xue; Oliver F Lange; Bernd Reif
Journal:  J Biomol NMR       Date:  2014-07-03       Impact factor: 2.835

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