Literature DB >> 24989039

Site-specific analysis of heteronuclear Overhauser effects in microcrystalline proteins.

Juan Miguel Lopez del Amo1, Vipin Agarwal, Riddhiman Sarkar, Justin Porter, Sam Asami, Martin Rübbelke, Uwe Fink, Yi Xue, Oliver F Lange, Bernd Reif.   

Abstract

Relaxation parameters such as longitudinal relaxation are susceptible to artifacts such as spin diffusion, and can be affected by paramagnetic impurities as e.g. oxygen, which make a quantitative interpretation difficult. We present here the site-specific measurement of [(1)H](13)C and [(1)H](15)N heteronuclear rates in an immobilized protein. For methyls, a strong effect is expected due to the three-fold rotation of the methyl group. Quantification of the [(1)H](13)C heteronuclear NOE in combination with (13)C-R 1 can yield a more accurate analysis of side chain motional parameters. The observation of significant [(1)H](15)N heteronuclear NOEs for certain backbone amides, as well as for specific asparagine/glutamine sidechain amides is consistent with MD simulations. The measurement of site-specific heteronuclear NOEs is enabled by the use of highly deuterated microcrystalline protein samples in which spin diffusion is reduced in comparison to protonated samples.

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Year:  2014        PMID: 24989039     DOI: 10.1007/s10858-014-9843-1

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  46 in total

1.  13C nuclear overhauser polarization-magic-angle spinning nuclear magnetic resonance spectroscopy in uniformly 13C-labeled solid proteins.

Authors:  Etsuko Katoh; K Takegoshi; Takehiko Terao
Journal:  J Am Chem Soc       Date:  2004-03-24       Impact factor: 15.419

2.  Assignment of dynamic regions in biological solids enabled by spin-state selective NMR experiments.

Authors:  Rasmus Linser; Uwe Fink; Bernd Reif
Journal:  J Am Chem Soc       Date:  2010-07-07       Impact factor: 15.419

3.  High resolution 1H-detected solid-state NMR spectroscopy of protein aliphatic resonances: access to tertiary structure information.

Authors:  Sam Asami; Peter Schmieder; Bernd Reif
Journal:  J Am Chem Soc       Date:  2010-11-03       Impact factor: 15.419

4.  Quantitative measurement of differential 15N-H(alpha/beta)T2 relaxation rates in a perdeuterated protein by MAS solid-state NMR spectroscopy.

Authors:  Veniamin Chevelkov; Anne Diehl; Bernd Reif
Journal:  Magn Reson Chem       Date:  2007-12       Impact factor: 2.447

5.  Molecular conformation and dynamics of the Y145Stop variant of human prion protein in amyloid fibrils.

Authors:  Jonathan J Helmus; Krystyna Surewicz; Philippe S Nadaud; Witold K Surewicz; Christopher P Jaroniec
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-24       Impact factor: 11.205

6.  Optimum levels of exchangeable protons in perdeuterated proteins for proton detection in MAS solid-state NMR spectroscopy.

Authors:  Umit Akbey; Sascha Lange; W Trent Franks; Rasmus Linser; Kristina Rehbein; Anne Diehl; Barth-Jan van Rossum; Bernd Reif; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2009-08-22       Impact factor: 2.835

7.  Probing surface accessibility of proteins using paramagnetic relaxation in solid-state NMR spectroscopy.

Authors:  Rasmus Linser; Uwe Fink; Bernd Reif
Journal:  J Am Chem Soc       Date:  2009-09-30       Impact factor: 15.419

8.  Deuterium spin probes of side-chain dynamics in proteins. 2. Spectral density mapping and identification of nanosecond time-scale side-chain motions.

Authors:  Nikolai R Skrynnikov; Oscar Millet; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-06-05       Impact factor: 15.419

9.  Quantifying conformational dynamics using solid-state R₁ρ experiments.

Authors:  Caitlin M Quinn; Ann E McDermott
Journal:  J Magn Reson       Date:  2012-05-29       Impact factor: 2.229

10.  Site-resolved measurement of microsecond-to-millisecond conformational-exchange processes in proteins by solid-state NMR spectroscopy.

Authors:  Martin Tollinger; Astrid C Sivertsen; Beat H Meier; Matthias Ernst; Paul Schanda
Journal:  J Am Chem Soc       Date:  2012-08-28       Impact factor: 15.419

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  2 in total

Review 1.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

Review 2.  Studying Dynamics by Magic-Angle Spinning Solid-State NMR Spectroscopy: Principles and Applications to Biomolecules.

Authors:  Paul Schanda; Matthias Ernst
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2016-02-15       Impact factor: 9.795

  2 in total

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