Literature DB >> 22138787

Assignment strategies for aliphatic protons in the solid-state in randomly protonated proteins.

Sam Asami1, Bernd Reif.   

Abstract

Biological solid-state nuclear magnetic resonance spectroscopy developed rapidly in the past two decades and emerged as an important tool for structural biology. Resonance assignment is an essential prerequisite for structure determination and the characterization of motional properties of a molecule. Experiments, which rely on carbon or nitrogen detection, suffer, however, from low sensitivity. Recently, we introduced the RAP (Reduced Adjoining Protonation) labeling scheme, which allows to detect backbone and sidechain protons with high sensitivity and resolution. We present here a (1)H-detected 3D (H)CCH experiment for assignment of backbone and sidechain proton resonances. Resolution is significantly improved by employing simultaneous (13)CO and (13)Cβ J-decoupling during evolution of the (13)Cα chemical shift. In total, ~90% of the (1)Hα-(13)Cα backbone resonances of chicken α-spectrin SH3 could be assigned.

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Year:  2011        PMID: 22138787     DOI: 10.1007/s10858-011-9591-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  38 in total

1.  Sensitive high resolution inverse detection NMR spectroscopy of proteins in the solid state.

Authors:  Eric K Paulson; Corey R Morcombe; Vadim Gaponenko; Barbara Dancheck; R Andrew Byrd; Kurt W Zilm
Journal:  J Am Chem Soc       Date:  2003-12-24       Impact factor: 15.419

2.  Narrow carbonyl resonances in proton-diluted proteins facilitate NMR assignments in the solid-state.

Authors:  Rasmus Linser; Uwe Fink; Bernd Reif
Journal:  J Biomol NMR       Date:  2010-03-16       Impact factor: 2.835

3.  High resolution 1H-detected solid-state NMR spectroscopy of protein aliphatic resonances: access to tertiary structure information.

Authors:  Sam Asami; Peter Schmieder; Bernd Reif
Journal:  J Am Chem Soc       Date:  2010-11-03       Impact factor: 15.419

4.  Protein structure determination by high-resolution solid-state NMR spectroscopy: application to microcrystalline ubiquitin.

Authors:  Stephan G Zech; A Joshua Wand; Ann E McDermott
Journal:  J Am Chem Soc       Date:  2005-06-22       Impact factor: 15.419

5.  Optimum levels of exchangeable protons in perdeuterated proteins for proton detection in MAS solid-state NMR spectroscopy.

Authors:  Umit Akbey; Sascha Lange; W Trent Franks; Rasmus Linser; Kristina Rehbein; Anne Diehl; Barth-Jan van Rossum; Bernd Reif; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2009-08-22       Impact factor: 2.835

6.  Molecular conformation of a peptide fragment of transthyretin in an amyloid fibril.

Authors:  Christopher P Jaroniec; Cait E MacPhee; Nathan S Astrof; Christopher M Dobson; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-12       Impact factor: 11.205

7.  A proton-detected 4D solid-state NMR experiment for protein structure determination.

Authors:  Matthias Huber; Sebastian Hiller; Paul Schanda; Matthias Ernst; Anja Böckmann; René Verel; Beat H Meier
Journal:  Chemphyschem       Date:  2011-02-15       Impact factor: 3.102

8.  High resolution 1H detected 1H,13C correlation spectra in MAS solid-state NMR using deuterated proteins with selective 1H,2H isotopic labeling of methyl groups.

Authors:  Vipin Agarwal; Anne Diehl; Nikolai Skrynnikov; Bernd Reif
Journal:  J Am Chem Soc       Date:  2006-10-04       Impact factor: 15.419

9.  Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR.

Authors:  W Trent Franks; Benjamin J Wylie; Heather L Frericks Schmidt; Andrew J Nieuwkoop; Rebecca-Maria Mayrhofer; Gautam J Shah; Daniel T Graesser; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-14       Impact factor: 11.205

10.  General structural motifs of amyloid protofilaments.

Authors:  Neil Ferguson; Johanna Becker; Henning Tidow; Sandra Tremmel; Timothy D Sharpe; Gerd Krause; Jeremy Flinders; Miriana Petrovich; John Berriman; Hartmut Oschkinat; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

View more
  8 in total

1.  Optimal degree of protonation for ¹H detection of aliphatic sites in randomly deuterated proteins as a function of the MAS frequency.

Authors:  Sam Asami; Kathrin Szekely; Paul Schanda; Beat H Meier; Bernd Reif
Journal:  J Biomol NMR       Date:  2012-08-23       Impact factor: 2.835

2.  MAS dependent sensitivity of different isotopomers in selectively methyl protonated protein samples in solid state NMR.

Authors:  Kai Xue; Riddhiman Sarkar; Zdenek Tosner; Daniela Lalli; Carina Motz; Benita Koch; Guido Pintacuda; Bernd Reif
Journal:  J Biomol NMR       Date:  2019-09-12       Impact factor: 2.835

Review 3.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

Review 4.  NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology.

Authors:  Caitlin M Quinn; Mingzhang Wang; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2018

5.  Limits of Resolution and Sensitivity of Proton Detected MAS Solid-State NMR Experiments at 111 kHz in Deuterated and Protonated Proteins.

Authors:  Kai Xue; Riddhiman Sarkar; Carina Motz; Sam Asami; Diana C Rodriguez Camargo; Venita Decker; Sebastian Wegner; Zdenek Tosner; Bernd Reif
Journal:  Sci Rep       Date:  2017-08-07       Impact factor: 4.379

6.  NMR Assignment of Methyl Groups in Immobilized Proteins Using Multiple-Bond 13C Homonuclear Transfers, Proton Detection, and Very Fast MAS.

Authors:  Piotr Paluch; Rafal Augustyniak; Mai-Liis Org; Kalju Vanatalu; Ats Kaldma; Ago Samoson; Jan Stanek
Journal:  Front Mol Biosci       Date:  2022-03-29

7.  Dipolar Order Parameters in Large Systems With Fast Spinning.

Authors:  W Trent Franks; Ben P Tatman; Jonah Trenouth; Józef R Lewandowski
Journal:  Front Mol Biosci       Date:  2021-12-09

8.  Biomolecular solid-state NMR spectroscopy at 1200 MHz: the gain in resolution.

Authors:  Morgane Callon; Alexander A Malär; Sara Pfister; Václav Římal; Marco E Weber; Thomas Wiegand; Johannes Zehnder; Matías Chávez; Riccardo Cadalbert; Rajdeep Deb; Alexander Däpp; Marie-Laure Fogeron; Andreas Hunkeler; Lauriane Lecoq; Anahit Torosyan; Dawid Zyla; Rudolf Glockshuber; Stefanie Jonas; Michael Nassal; Matthias Ernst; Anja Böckmann; Beat H Meier
Journal:  J Biomol NMR       Date:  2021-06-25       Impact factor: 2.835

  8 in total

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