Literature DB >> 22167467

Backbone assignment of perdeuterated proteins using long-range H/C-dipolar transfers.

Rasmus Linser1.   

Abstract

For micro-crystalline proteins, solid-state nuclear magnetic resonance spectroscopy of perdeuterated samples can provide spectra of unprecedented quality. Apart from allowing to detect sparsely introduced protons and thereby increasing the effective resolution for a series of sophisticated techniques, deuteration can provide extraordinary coherence lifetimes--obtainable for all involved nuclei virtually without decoupling and enabling the use of scalar magnetization transfers. Unfortunately, for fibrillar or membrane-embedded proteins, significantly shorter transverse relaxation times have been encountered as compared to micro-crystalline proteins despite an identical sample preparation, calling for alternative strategies for resonance assignment. In this work we propose an approach towards sequential assignment of perdeuterated proteins based on long-range (1)H/(13)C Cross Polarization transfers. This strategy gives rise to H/N-separated correlations involving C(α), C(β), and CO chemical shifts of both, intra- and interresidual contacts, and thus connecting adjacent residues independent of transverse relaxation times.

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Year:  2011        PMID: 22167467     DOI: 10.1007/s10858-011-9593-2

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  38 in total

1.  Narrow carbonyl resonances in proton-diluted proteins facilitate NMR assignments in the solid-state.

Authors:  Rasmus Linser; Uwe Fink; Bernd Reif
Journal:  J Biomol NMR       Date:  2010-03-16       Impact factor: 2.835

2.  Assignment of dynamic regions in biological solids enabled by spin-state selective NMR experiments.

Authors:  Rasmus Linser; Uwe Fink; Bernd Reif
Journal:  J Am Chem Soc       Date:  2010-07-07       Impact factor: 15.419

3.  High resolution 1H-detected solid-state NMR spectroscopy of protein aliphatic resonances: access to tertiary structure information.

Authors:  Sam Asami; Peter Schmieder; Bernd Reif
Journal:  J Am Chem Soc       Date:  2010-11-03       Impact factor: 15.419

4.  Homonuclear mixing sequences for perdeuterated proteins.

Authors:  Kuo-Ying Huang; Ansgar B Siemer; Ann E McDermott
Journal:  J Magn Reson       Date:  2010-10-26       Impact factor: 2.229

5.  Solid-state protein-structure determination with proton-detected triple-resonance 3D magic-angle-spinning NMR spectroscopy.

Authors:  Donghua H Zhou; John J Shea; Andrew J Nieuwkoop; W Trent Franks; Benjamin J Wylie; Charles Mullen; Dennis Sandoz; Chad M Rienstra
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

6.  Optimum levels of exchangeable protons in perdeuterated proteins for proton detection in MAS solid-state NMR spectroscopy.

Authors:  Umit Akbey; Sascha Lange; W Trent Franks; Rasmus Linser; Kristina Rehbein; Anne Diehl; Barth-Jan van Rossum; Bernd Reif; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2009-08-22       Impact factor: 2.835

7.  Side-chain to backbone correlations from solid-state NMR of perdeuterated proteins through combined excitation and long-range magnetization transfers.

Authors:  Rasmus Linser
Journal:  J Biomol NMR       Date:  2011-08-07       Impact factor: 2.835

8.  A proton-detected 4D solid-state NMR experiment for protein structure determination.

Authors:  Matthias Huber; Sebastian Hiller; Paul Schanda; Matthias Ernst; Anja Böckmann; René Verel; Beat H Meier
Journal:  Chemphyschem       Date:  2011-02-15       Impact factor: 3.102

9.  High resolution 1H detected 1H,13C correlation spectra in MAS solid-state NMR using deuterated proteins with selective 1H,2H isotopic labeling of methyl groups.

Authors:  Vipin Agarwal; Anne Diehl; Nikolai Skrynnikov; Bernd Reif
Journal:  J Am Chem Soc       Date:  2006-10-04       Impact factor: 15.419

10.  Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR.

Authors:  W Trent Franks; Benjamin J Wylie; Heather L Frericks Schmidt; Andrew J Nieuwkoop; Rebecca-Maria Mayrhofer; Gautam J Shah; Daniel T Graesser; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-14       Impact factor: 11.205

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  6 in total

1.  Sequential backbone assignment based on dipolar amide-to-amide correlation experiments.

Authors:  ShengQi Xiang; Kristof Grohe; Petra Rovó; Suresh Kumar Vasa; Karin Giller; Stefan Becker; Rasmus Linser
Journal:  J Biomol NMR       Date:  2015-05-15       Impact factor: 2.835

2.  Solid state NMR of proteins at high MAS frequencies: symmetry-based mixing and simultaneous acquisition of chemical shift correlation spectra.

Authors:  Peter Bellstedt; Christian Herbst; Sabine Häfner; Jörg Leppert; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2012-11-23       Impact factor: 2.835

3.  Towards automatic protein backbone assignment using proton-detected 4D solid-state NMR data.

Authors:  ShengQi Xiang; Veniamin Chevelkov; Stefan Becker; Adam Lange
Journal:  J Biomol NMR       Date:  2014-09-06       Impact factor: 2.835

4.  MAS solid state NMR of proteins: simultaneous ¹⁵N- ¹³CA and ¹⁵N- ¹³CO dipolar recoupling via low-power symmetry-based RF pulse schemes.

Authors:  Christian Herbst; Peter Bellstedt; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2015-02-25       Impact factor: 2.835

5.  High-resolution proton CRAMPS NMR using narrowband analog filters and postponed data acquisition.

Authors:  Liying Wang; Donghua H Zhou
Journal:  J Magn Reson       Date:  2013-06-29       Impact factor: 2.229

6.  Solid-state NMR analysis of membrane proteins and protein aggregates by proton detected spectroscopy.

Authors:  Donghua H Zhou; Andrew J Nieuwkoop; Deborah A Berthold; Gemma Comellas; Lindsay J Sperling; Ming Tang; Gautam J Shah; Elliott J Brea; Luisel R Lemkau; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2012-09-18       Impact factor: 2.835

  6 in total

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